Wall clock time and date at job start Tue Mar 31 2020 05:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46822 * 2 1 4 4 C 1.52999 * 109.46945 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47543 * 179.97438 * 4 3 2 6 6 C 1.36964 * 120.00191 * 264.52552 * 5 4 3 7 7 H 1.08008 * 120.00142 * 146.31410 * 6 5 4 8 8 C 1.38795 * 120.00078 * 326.31897 * 6 5 4 9 9 N 1.31562 * 120.00035 * 337.37016 * 8 6 5 10 10 Si 1.86799 * 120.00174 * 157.37252 * 8 6 5 11 11 H 1.48499 * 109.47228 * 90.00297 * 10 8 6 12 12 H 1.48506 * 109.47342 * 209.99887 * 10 8 6 13 13 H 1.48500 * 109.47518 * 330.00004 * 10 8 6 14 14 C 1.38440 * 120.00329 * 84.52282 * 5 4 3 15 15 N 1.32804 * 118.80033 * 0.02562 * 14 5 4 16 16 C 1.32227 * 121.02291 * 180.02562 * 15 14 5 17 17 C 1.39188 * 118.61648 * 0.02562 * 16 15 14 18 18 C 1.47186 * 135.04586 * 180.02562 * 17 16 15 19 19 C 1.43202 * 126.82434 * 359.97438 * 18 17 16 20 20 N 9.40776 * 107.10012 * 51.98118 * 2 1 3 21 21 C 1.36317 * 106.36099 * 179.97438 * 18 17 16 22 22 N 1.36054 * 109.72619 * 0.02562 * 21 18 17 23 23 H 0.96991 * 124.74685 * 180.02562 * 22 21 18 24 24 C 1.37086 * 110.51080 * 359.97438 * 22 21 18 25 25 N 1.32323 * 118.81039 * 180.26714 * 14 5 4 26 26 H 1.09001 * 109.47040 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46745 * 299.99909 * 1 2 3 28 28 H 1.08997 * 109.47401 * 59.99574 * 1 2 3 29 29 H 1.09004 * 109.46745 * 240.00091 * 2 1 3 30 30 H 1.08995 * 109.47335 * 119.99652 * 2 1 3 31 31 H 1.08999 * 109.47598 * 60.00052 * 3 2 1 32 32 H 1.09006 * 109.47335 * 299.99761 * 3 2 1 33 33 H 1.08996 * 109.47596 * 59.99823 * 4 3 2 34 34 H 1.09006 * 109.47356 * 299.99767 * 4 3 2 35 35 H 0.97001 * 120.00207 * 179.97438 * 9 8 6 36 36 H 1.08001 * 120.69149 * 179.97438 * 16 15 14 37 37 H 1.07996 * 125.14009 * 180.02562 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 7 4.0583 2.8237 -0.0013 6 6 4.3928 3.4313 -1.1823 7 1 4.2277 4.4910 -1.3102 8 6 4.9439 2.6853 -2.2148 9 7 5.5513 1.5480 -1.9532 10 14 4.8233 3.2960 -3.9760 11 1 6.0039 4.1407 -4.2890 12 1 4.7863 2.1349 -4.9012 13 1 3.5840 4.0979 -4.1382 14 6 4.1817 3.5149 1.1919 15 7 3.8511 2.9027 2.3231 16 6 3.9514 3.5214 3.4873 17 6 4.4120 4.8347 3.5068 18 6 4.6592 5.8364 4.5565 19 6 4.4587 5.6712 5.9648 20 7 4.2963 5.5383 7.0839 21 6 5.1169 6.9527 3.9220 22 7 5.1726 6.7285 2.5812 23 1 5.4682 7.3776 1.9240 24 6 4.7537 5.4563 2.2891 25 7 4.6202 4.7630 1.1634 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5137 0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6766 1.9564 -0.8900 33 1 3.9330 0.9289 -0.8908 34 1 3.9337 0.9286 0.8892 35 1 5.9362 1.0264 -2.6748 36 1 3.6806 3.0185 4.4040 37 1 5.3935 7.8756 4.4098 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167132461.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:10 Heat of formation + Delta-G solvation = 106.333166 kcal Electronic energy + Delta-G solvation = -21616.456975 eV Core-core repulsion = 18394.431904 eV Total energy + Delta-G solvation = -3222.025071 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.54020 -40.01794 -37.85982 -37.28304 -35.56562 -34.21515 -33.60784 -31.91291 -30.31926 -29.33966 -26.76063 -24.95678 -24.61369 -23.69796 -22.49141 -21.82601 -19.79196 -19.48007 -17.84766 -17.61994 -17.04036 -16.68697 -16.46063 -16.22614 -15.87488 -15.25662 -15.05496 -14.65037 -14.41442 -14.34258 -13.91562 -13.88499 -13.75370 -13.55409 -13.37295 -13.10576 -12.97675 -12.79199 -12.19548 -12.01442 -11.92022 -11.76694 -11.65017 -11.46782 -11.38873 -10.90484 -10.20241 -9.69371 -9.52644 -8.56837 -8.18088 -5.85698 0.13515 0.67370 1.15856 1.44497 1.47123 1.57795 1.70799 1.83988 2.27055 2.65513 2.81313 2.91437 3.18481 3.39609 3.68927 3.93799 4.00691 4.14802 4.24878 4.35341 4.40821 4.48201 4.59514 4.84496 4.90682 4.92191 5.05075 5.06180 5.22225 5.22362 5.32709 5.41887 5.47506 5.50912 5.62985 5.90034 6.10259 6.32270 6.62949 6.70067 6.71843 7.25831 7.50143 8.05528 8.70023 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.014995 B = 0.005286 C = 0.004139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.858829 B = 5295.717877 C = 6762.941907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.113 4.113 3 C -0.113 4.113 4 C 0.134 3.866 5 N -0.413 5.413 6 C -0.307 4.307 7 H 0.085 0.915 8 C -0.004 4.004 9 N -0.891 5.891 10 Si 0.987 3.013 11 H -0.275 1.275 12 H -0.275 1.275 13 H -0.265 1.265 14 C 0.518 3.482 15 N -0.591 5.591 16 C 0.223 3.777 17 C -0.278 4.278 18 C -0.120 4.120 19 C 0.320 3.680 20 N -0.482 5.482 21 C 0.162 3.838 22 N -0.555 5.555 23 H 0.438 0.562 24 C 0.354 3.646 25 N -0.614 5.614 26 H 0.070 0.930 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.045 0.955 32 H 0.044 0.956 33 H 0.091 0.909 34 H 0.047 0.953 35 H 0.273 0.727 36 H 0.178 0.822 37 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.260 6.631 4.744 8.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.152 4.152 3 C -0.152 4.152 4 C 0.010 3.990 5 N -0.110 5.110 6 C -0.437 4.437 7 H 0.102 0.898 8 C -0.207 4.207 9 N -0.528 5.528 10 Si 0.810 3.190 11 H -0.200 1.200 12 H -0.200 1.200 13 H -0.189 1.189 14 C 0.164 3.836 15 N -0.314 5.314 16 C 0.047 3.953 17 C -0.293 4.293 18 C -0.134 4.134 19 C 0.007 3.993 20 N -0.160 5.160 21 C 0.028 3.972 22 N -0.164 5.164 23 H 0.280 0.720 24 C 0.108 3.892 25 N -0.348 5.348 26 H 0.089 0.911 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.109 0.891 34 H 0.066 0.934 35 H 0.082 0.918 36 H 0.195 0.805 37 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -3.490 5.643 5.036 8.330 hybrid contribution 0.530 0.720 -0.837 1.225 sum -2.960 6.363 4.199 8.178 Atomic orbital electron populations 1.21709 0.94417 1.02250 1.01630 1.21384 0.96850 0.95014 1.01904 1.21788 0.95378 0.97785 1.00259 1.21472 0.93091 0.81954 1.02453 1.42426 1.55853 1.11853 1.00818 1.19561 1.39984 0.95486 0.88652 0.89778 1.26159 0.93811 0.96709 1.04005 1.70106 1.32336 1.16045 1.34276 0.85041 0.78937 0.78008 0.77027 1.20049 1.19972 1.18914 1.19475 0.91470 0.86024 0.86677 1.68033 1.26748 1.38406 0.98232 1.22598 0.88090 0.89442 0.95146 1.19887 1.17622 0.97851 0.93964 1.15407 1.18187 0.96120 0.83658 1.24666 0.91284 0.92199 0.91103 1.81369 1.12899 1.09142 1.12625 1.22635 0.95221 0.99077 0.80269 1.41320 1.56416 1.10146 1.08554 0.72034 1.18329 0.94162 0.87497 0.89171 1.66688 1.29809 1.08931 1.29380 0.91131 0.92897 0.92986 0.92267 0.91797 0.93578 0.93696 0.89119 0.93441 0.91776 0.80459 0.73741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.65 9.91 71.98 0.71 -2.94 16 2 C -0.11 -3.57 5.93 30.59 0.18 -3.39 16 3 C -0.11 -4.48 5.51 30.59 0.17 -4.31 16 4 C 0.13 6.30 4.88 86.38 0.42 6.72 16 5 N -0.41 -21.33 2.65 -524.21 -1.39 -22.72 16 6 C -0.31 -16.42 8.95 84.02 0.75 -15.67 16 7 H 0.08 4.60 7.62 -2.91 -0.02 4.57 16 8 C 0.00 -0.21 4.91 84.87 0.42 0.20 16 9 N -0.89 -47.45 11.35 21.64 0.25 -47.21 16 10 Si 0.99 40.39 29.61 68.60 2.03 42.43 16 11 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 12 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 13 H -0.26 -10.57 7.11 99.48 0.71 -9.87 16 14 C 0.52 25.43 8.10 261.41 2.12 27.55 16 15 N -0.59 -26.14 9.16 -197.43 -1.81 -27.95 16 16 C 0.22 8.16 11.36 84.86 0.96 9.12 16 17 C -0.28 -9.32 6.40 -20.04 -0.13 -9.44 16 18 C -0.12 -2.95 6.12 -20.13 -0.12 -3.07 16 19 C 0.32 8.30 15.88 88.30 1.40 9.70 16 20 N -0.48 -14.29 18.55 19.04 0.35 -13.94 16 21 C 0.16 2.63 11.79 83.59 0.99 3.61 16 22 N -0.56 -12.45 5.97 -191.46 -1.14 -13.59 16 23 H 0.44 7.22 8.96 -92.71 -0.83 6.39 16 24 C 0.35 12.67 8.47 134.00 1.13 13.81 16 25 N -0.61 -28.31 9.36 -195.51 -1.83 -30.14 16 26 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.05 1.33 8.14 -2.38 -0.02 1.31 16 28 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 30 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.04 1.85 8.14 -2.38 -0.02 1.84 16 33 H 0.09 4.60 5.34 -2.39 -0.01 4.59 16 34 H 0.05 2.27 7.50 -2.38 -0.02 2.25 16 35 H 0.27 13.59 8.31 -92.71 -0.77 12.82 16 36 H 0.18 5.26 8.06 -2.91 -0.02 5.24 16 37 H 0.25 0.92 8.06 -2.91 -0.02 0.90 16 Total: -1.00 -69.08 327.04 5.75 -63.33 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: 0.28 Total: 17.92 kcal Atomic # 6 Polarization: 22.87 SS G_CDS: 9.01 Total: 31.88 kcal Atomic # 7 Polarization: -149.98 SS G_CDS: -5.57 Total: -155.55 kcal Atomic # 14 Polarization: 40.39 SS G_CDS: 2.03 Total: 42.43 kcal Total: -69.08 5.75 -63.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167132461.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.660 kcal (2) G-P(sol) polarization free energy of solvation -69.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds