Wall clock time and date at job start Tue Mar 31 2020 05:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35671 * 116.99977 * 2 1 4 4 C 1.38044 * 120.21109 * 0.22892 * 3 2 1 5 5 C 1.39216 * 119.98043 * 180.27942 * 4 3 2 6 6 N 1.38919 * 119.79625 * 179.76559 * 5 4 3 7 7 C 1.46508 * 119.99809 * 179.44708 * 6 5 4 8 8 C 1.50704 * 109.46961 * 180.02562 * 7 6 5 9 9 C 1.38594 * 120.79809 * 269.72419 * 8 7 6 10 10 N 1.32332 * 119.10176 * 179.72322 * 9 8 7 11 11 C 1.31797 * 120.81856 * 0.56108 * 10 9 8 12 12 N 1.31795 * 121.75213 * 359.70917 * 11 10 9 13 13 C 1.32328 * 120.82040 * 0.02562 * 12 11 10 14 14 C 1.39723 * 120.40202 * 359.48557 * 5 4 3 15 15 C 1.36221 * 120.43107 * 0.26206 * 14 5 4 16 16 C 1.40858 * 120.01169 * 359.97438 * 15 14 5 17 17 C 1.40963 * 120.20184 * 179.97438 * 16 15 14 18 18 H 1.07998 * 119.99737 * 204.84933 * 17 16 15 19 19 C 1.39839 * 119.99955 * 24.84838 * 17 16 15 20 20 N 1.30950 * 120.00188 * 17.83760 * 19 17 16 21 21 Si 1.86804 * 119.99907 * 197.83946 * 19 17 16 22 22 H 1.48499 * 109.47292 * 0.02562 * 21 19 17 23 23 H 1.48507 * 109.47121 * 120.00164 * 21 19 17 24 24 H 1.48501 * 109.47088 * 240.00056 * 21 19 17 25 25 H 1.09000 * 109.46917 * 300.00244 * 1 2 3 26 26 H 1.08997 * 109.47038 * 60.00321 * 1 2 3 27 27 H 1.09000 * 109.46802 * 179.97438 * 1 2 3 28 28 H 1.07998 * 120.01154 * 0.02562 * 4 3 2 29 29 H 0.97000 * 120.00294 * 359.72809 * 6 5 4 30 30 H 1.08998 * 109.46974 * 300.00161 * 7 6 5 31 31 H 1.08998 * 109.46967 * 60.00186 * 7 6 5 32 32 H 1.07999 * 120.45070 * 359.97438 * 9 8 7 33 33 H 1.07997 * 119.12649 * 179.72822 * 11 10 9 34 34 H 1.08001 * 120.45082 * 180.02562 * 13 12 11 35 35 H 1.08000 * 119.78075 * 180.27529 * 14 5 4 36 36 H 1.08009 * 119.99455 * 179.97438 * 15 14 5 37 37 H 0.97003 * 120.00106 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 1.2974 2.3693 0.0048 5 6 1.9344 3.6072 -0.0011 6 7 1.1783 4.7726 -0.0012 7 6 1.8440 6.0777 0.0048 8 6 0.8066 7.1708 0.0040 9 6 0.3266 7.6927 -1.1868 10 7 -0.5883 8.6481 -1.1484 11 6 -1.0340 9.1102 0.0026 12 7 -0.5967 8.6418 1.1542 13 6 0.3141 7.6826 1.1941 14 6 3.3295 3.6845 -0.0011 15 6 4.0834 2.5500 -0.0006 16 6 3.4574 1.2881 0.0004 17 6 4.2337 0.1115 0.0003 18 1 3.8223 -0.8067 -0.3921 19 6 5.5364 0.1333 0.5083 20 7 5.9189 1.1134 1.2879 21 14 6.7310 -1.2359 0.0746 22 1 6.0586 -2.2159 -0.8157 23 1 7.9098 -0.6618 -0.6226 24 1 7.1744 -1.9179 1.3170 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 0.2187 2.3170 0.0089 29 1 0.2096 4.7223 -0.0012 30 1 2.4632 6.1655 0.8975 31 1 2.4704 6.1701 -0.8824 32 1 0.6913 7.3220 -2.1333 33 1 -1.7777 9.8933 0.0020 34 1 0.6680 7.3029 2.1412 35 1 3.8132 4.6502 -0.0012 36 1 5.1613 2.6180 -0.0010 37 1 6.8224 1.1283 1.6406 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167261033.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:04 Heat of formation + Delta-G solvation = 39.950232 kcal Electronic energy + Delta-G solvation = -21075.236620 eV Core-core repulsion = 17818.040218 eV Total energy + Delta-G solvation = -3257.196402 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.122 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.20083 -38.76925 -36.95252 -35.20968 -33.89575 -33.47830 -31.77418 -29.03082 -28.86732 -26.54428 -26.33837 -24.77226 -24.05477 -22.75522 -20.94914 -20.06123 -17.82835 -17.74367 -17.38416 -16.86624 -16.06040 -15.10110 -14.94468 -14.64016 -14.47234 -14.20424 -13.87517 -13.82901 -13.78420 -13.44625 -13.31689 -12.72532 -12.22259 -11.76088 -11.47511 -11.15338 -11.06681 -11.02366 -10.98244 -10.68849 -10.46530 -10.30466 -9.80559 -9.75487 -9.49534 -9.43222 -9.15151 -8.47843 -7.17511 -6.66852 -6.45222 -3.96520 0.62579 0.86211 2.86607 2.97092 3.17904 3.24399 3.29003 3.51919 3.92775 4.00762 4.08886 4.25206 4.43111 4.53536 4.61477 4.68739 4.76164 5.21201 5.49876 5.66343 5.73320 5.76828 5.84252 5.91291 5.96617 6.13380 6.16633 6.33994 6.67836 6.72570 6.91987 7.07722 7.30720 7.47587 7.70099 7.83850 7.91911 8.06539 8.33279 8.49685 8.54882 8.82206 9.01134 9.18590 10.39200 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.024727 B = 0.003537 C = 0.003219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.072805 B = 7915.092833 C = 8695.472688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.310 6.310 3 C 0.048 3.952 4 C -0.239 4.239 5 C 0.121 3.879 6 N -0.756 5.756 7 C 0.186 3.814 8 C -0.198 4.198 9 C 0.163 3.837 10 N -0.523 5.523 11 C 0.288 3.712 12 N -0.522 5.522 13 C 0.163 3.837 14 C -0.187 4.187 15 C -0.104 4.104 16 C 0.063 3.937 17 C -0.449 4.449 18 H 0.078 0.922 19 C 0.072 3.928 20 N -0.810 5.810 21 Si 0.903 3.097 22 H -0.262 1.262 23 H -0.275 1.275 24 H -0.278 1.278 25 H 0.039 0.961 26 H 0.038 0.962 27 H 0.081 0.919 28 H 0.095 0.905 29 H 0.384 0.616 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.170 0.830 33 H 0.195 0.805 34 H 0.170 0.830 35 H 0.091 0.909 36 H 0.126 0.874 37 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.219 9.985 -1.915 13.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.224 6.224 3 C 0.003 3.997 4 C -0.262 4.262 5 C 0.024 3.976 6 N -0.392 5.392 7 C 0.060 3.940 8 C -0.202 4.202 9 C -0.004 4.004 10 N -0.236 5.236 11 C 0.000 4.000 12 N -0.236 5.236 13 C -0.003 4.003 14 C -0.209 4.209 15 C -0.125 4.125 16 C 0.060 3.940 17 C -0.480 4.480 18 H 0.096 0.904 19 C -0.143 4.143 20 N -0.439 5.439 21 Si 0.729 3.271 22 H -0.186 1.186 23 H -0.200 1.200 24 H -0.203 1.203 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.099 0.901 28 H 0.113 0.887 29 H 0.216 0.784 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.187 0.813 33 H 0.211 0.789 34 H 0.187 0.813 35 H 0.109 0.891 36 H 0.144 0.856 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -8.454 10.698 -1.780 13.751 hybrid contribution 0.520 -1.017 -0.019 1.142 sum -7.934 9.681 -1.800 12.645 Atomic orbital electron populations 1.22717 0.81873 1.01652 0.99816 1.85998 1.18112 1.28252 1.90001 1.18967 0.92177 0.82112 1.06421 1.20042 0.97080 0.91467 1.17604 1.16976 0.90350 0.84357 1.05887 1.43841 1.06428 1.01509 1.87467 1.19781 0.91545 0.80589 1.02085 1.21908 1.01695 1.00987 0.95629 1.23270 0.89284 0.89255 0.98555 1.68468 1.11889 1.12139 1.31097 1.25001 0.95781 0.96353 0.82871 1.68469 1.12128 1.11909 1.31052 1.23284 0.89183 0.89254 0.98618 1.20007 0.91169 0.97823 1.11906 1.20704 0.99588 0.90239 1.01935 1.16946 0.87074 0.94103 0.95862 1.19256 0.96704 0.96545 1.35470 0.90409 1.25777 0.98844 0.96667 0.92974 1.69870 1.18874 1.31290 1.23820 0.86340 0.80161 0.81537 0.79095 1.18598 1.20032 1.20337 0.94229 0.94330 0.90100 0.88680 0.78369 0.91738 0.91747 0.81328 0.78884 0.81302 0.89111 0.85623 0.91416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.61 9.81 101.05 0.99 1.60 16 2 O -0.31 -7.17 9.78 -18.72 -0.18 -7.35 16 3 C 0.05 1.19 6.71 -38.42 -0.26 0.93 16 4 C -0.24 -5.16 8.86 -39.29 -0.35 -5.50 16 5 C 0.12 2.47 6.66 -83.73 -0.56 1.91 16 6 N -0.76 -11.85 5.69 -59.70 -0.34 -12.19 16 7 C 0.19 2.37 5.06 -5.19 -0.03 2.35 16 8 C -0.20 -2.18 5.28 -104.36 -0.55 -2.73 16 9 C 0.16 1.75 11.01 -17.20 -0.19 1.56 16 10 N -0.52 -5.94 10.44 -14.58 -0.15 -6.09 16 11 C 0.29 2.99 12.29 -92.15 -1.13 1.86 16 12 N -0.52 -5.99 10.44 -14.58 -0.15 -6.14 16 13 C 0.16 1.78 11.01 -17.21 -0.19 1.59 16 14 C -0.19 -4.10 9.22 -39.75 -0.37 -4.47 16 15 C -0.10 -2.63 8.62 -39.32 -0.34 -2.97 16 16 C 0.06 1.69 5.58 -106.64 -0.60 1.10 16 17 C -0.45 -12.25 8.70 -37.95 -0.33 -12.58 16 18 H 0.08 2.13 7.64 -52.49 -0.40 1.73 16 19 C 0.07 1.84 5.13 -17.33 -0.09 1.75 16 20 N -0.81 -21.17 10.97 55.54 0.61 -20.56 16 21 Si 0.90 19.30 29.60 -169.99 -5.03 14.27 16 22 H -0.26 -5.60 7.11 56.52 0.40 -5.20 16 23 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 24 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 25 H 0.04 0.63 7.65 -51.93 -0.40 0.24 16 26 H 0.04 0.60 7.67 -51.93 -0.40 0.21 16 27 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 28 H 0.10 1.81 6.29 -52.49 -0.33 1.48 16 29 H 0.38 5.58 8.46 -40.82 -0.35 5.23 16 30 H 0.06 0.84 7.89 -51.93 -0.41 0.43 16 31 H 0.06 0.81 7.87 -51.93 -0.41 0.40 16 32 H 0.17 1.53 8.06 -52.49 -0.42 1.11 16 33 H 0.19 1.37 8.06 -52.49 -0.42 0.94 16 34 H 0.17 1.59 8.06 -52.49 -0.42 1.17 16 35 H 0.09 1.77 6.67 -52.49 -0.35 1.42 16 36 H 0.13 3.28 6.17 -52.48 -0.32 2.96 16 37 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 LS Contribution 319.13 15.07 4.81 4.81 Total: -1.00 -29.96 319.13 -8.61 -38.57 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -4.19 Total: 8.28 kcal Atomic # 6 Polarization: -9.61 SS G_CDS: -3.98 Total: -13.59 kcal Atomic # 7 Polarization: -44.95 SS G_CDS: -0.04 Total: -44.99 kcal Atomic # 8 Polarization: -7.17 SS G_CDS: -0.18 Total: -7.35 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -5.03 Total: 14.27 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.96 -8.61 -38.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167261033.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.518 kcal (2) G-P(sol) polarization free energy of solvation -29.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds