Wall clock time and date at job start Tue Mar 31 2020 05:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35671 * 116.99977 * 2 1 4 4 C 1.38044 * 120.21109 * 0.22892 * 3 2 1 5 5 C 1.39216 * 119.98043 * 180.27942 * 4 3 2 6 6 N 1.38919 * 119.79625 * 179.76559 * 5 4 3 7 7 C 1.46508 * 119.99809 * 179.44708 * 6 5 4 8 8 C 1.50704 * 109.46961 * 180.02562 * 7 6 5 9 9 C 1.38594 * 120.79809 * 269.72419 * 8 7 6 10 10 N 1.32332 * 119.10176 * 179.72322 * 9 8 7 11 11 C 1.31797 * 120.81856 * 0.56108 * 10 9 8 12 12 N 1.31795 * 121.75213 * 359.70917 * 11 10 9 13 13 C 1.32328 * 120.82040 * 0.02562 * 12 11 10 14 14 C 1.39723 * 120.40202 * 359.48557 * 5 4 3 15 15 C 1.36221 * 120.43107 * 0.26206 * 14 5 4 16 16 C 1.40858 * 120.01169 * 359.97438 * 15 14 5 17 17 C 1.40963 * 120.20184 * 179.97438 * 16 15 14 18 18 H 1.07998 * 119.99737 * 204.84933 * 17 16 15 19 19 C 1.39839 * 119.99955 * 24.84838 * 17 16 15 20 20 N 1.30950 * 120.00188 * 17.83760 * 19 17 16 21 21 Si 1.86804 * 119.99907 * 197.83946 * 19 17 16 22 22 H 1.48499 * 109.47292 * 0.02562 * 21 19 17 23 23 H 1.48507 * 109.47121 * 120.00164 * 21 19 17 24 24 H 1.48501 * 109.47088 * 240.00056 * 21 19 17 25 25 H 1.09000 * 109.46917 * 300.00244 * 1 2 3 26 26 H 1.08997 * 109.47038 * 60.00321 * 1 2 3 27 27 H 1.09000 * 109.46802 * 179.97438 * 1 2 3 28 28 H 1.07998 * 120.01154 * 0.02562 * 4 3 2 29 29 H 0.97000 * 120.00294 * 359.72809 * 6 5 4 30 30 H 1.08998 * 109.46974 * 300.00161 * 7 6 5 31 31 H 1.08998 * 109.46967 * 60.00186 * 7 6 5 32 32 H 1.07999 * 120.45070 * 359.97438 * 9 8 7 33 33 H 1.07997 * 119.12649 * 179.72822 * 11 10 9 34 34 H 1.08001 * 120.45082 * 180.02562 * 13 12 11 35 35 H 1.08000 * 119.78075 * 180.27529 * 14 5 4 36 36 H 1.08009 * 119.99455 * 179.97438 * 15 14 5 37 37 H 0.97003 * 120.00106 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 1.2974 2.3693 0.0048 5 6 1.9344 3.6072 -0.0011 6 7 1.1783 4.7726 -0.0012 7 6 1.8440 6.0777 0.0048 8 6 0.8066 7.1708 0.0040 9 6 0.3266 7.6927 -1.1868 10 7 -0.5883 8.6481 -1.1484 11 6 -1.0340 9.1102 0.0026 12 7 -0.5967 8.6418 1.1542 13 6 0.3141 7.6826 1.1941 14 6 3.3295 3.6845 -0.0011 15 6 4.0834 2.5500 -0.0006 16 6 3.4574 1.2881 0.0004 17 6 4.2337 0.1115 0.0003 18 1 3.8223 -0.8067 -0.3921 19 6 5.5364 0.1333 0.5083 20 7 5.9189 1.1134 1.2879 21 14 6.7310 -1.2359 0.0746 22 1 6.0586 -2.2159 -0.8157 23 1 7.9098 -0.6618 -0.6226 24 1 7.1744 -1.9179 1.3170 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 0.2187 2.3170 0.0089 29 1 0.2096 4.7223 -0.0012 30 1 2.4632 6.1655 0.8975 31 1 2.4704 6.1701 -0.8824 32 1 0.6913 7.3220 -2.1333 33 1 -1.7777 9.8933 0.0020 34 1 0.6680 7.3029 2.1412 35 1 3.8132 4.6502 -0.0012 36 1 5.1613 2.6180 -0.0010 37 1 6.8224 1.1283 1.6406 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167261033.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:03 Heat of formation + Delta-G solvation = 21.645843 kcal Electronic energy + Delta-G solvation = -21076.030358 eV Core-core repulsion = 17818.040218 eV Total energy + Delta-G solvation = -3257.990140 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.122 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.03730 -40.47598 -38.49201 -36.75551 -35.03507 -34.72503 -33.13943 -30.64343 -30.57162 -28.06170 -27.54730 -25.71386 -25.59946 -23.82887 -22.68033 -21.68879 -19.21571 -18.60440 -18.59117 -18.48408 -17.52012 -16.77048 -16.22129 -16.19497 -15.89306 -15.63409 -15.29801 -14.80780 -14.68090 -14.54636 -14.44897 -14.33785 -13.94823 -13.48743 -13.10853 -12.76871 -12.72569 -12.42167 -12.14059 -11.89220 -11.86944 -11.80839 -11.49869 -11.39095 -10.98221 -10.59553 -10.30499 -10.12318 -8.91621 -8.49643 -8.18098 -5.88586 -0.20871 0.03668 1.11456 1.15107 1.42423 1.55816 1.57821 2.32443 2.60330 2.85972 2.93881 3.07679 3.21384 3.21719 3.60400 3.67872 3.79511 3.86680 4.37925 4.46321 4.48223 4.50496 4.60912 4.64052 4.75302 4.75670 4.97829 4.99198 5.26435 5.30476 5.37263 5.46636 5.64139 5.88451 5.91835 6.10032 6.29431 6.52759 6.80159 6.95166 7.02992 7.08136 7.12954 7.38708 8.55000 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.024727 B = 0.003537 C = 0.003219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.072805 B = 7915.092833 C = 8695.472688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.340 6.340 3 C 0.043 3.957 4 C -0.250 4.250 5 C 0.152 3.848 6 N -0.744 5.744 7 C 0.187 3.813 8 C -0.199 4.199 9 C 0.163 3.837 10 N -0.538 5.538 11 C 0.288 3.712 12 N -0.538 5.538 13 C 0.161 3.839 14 C -0.200 4.200 15 C -0.115 4.115 16 C 0.014 3.986 17 C -0.488 4.488 18 H 0.059 0.941 19 C 0.032 3.968 20 N -0.843 5.843 21 Si 0.971 3.029 22 H -0.266 1.266 23 H -0.264 1.264 24 H -0.270 1.270 25 H 0.049 0.951 26 H 0.053 0.947 27 H 0.109 0.891 28 H 0.123 0.877 29 H 0.394 0.606 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.184 0.816 33 H 0.223 0.777 34 H 0.181 0.819 35 H 0.115 0.885 36 H 0.107 0.893 37 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.698 11.404 -2.166 15.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.255 6.255 3 C -0.003 4.003 4 C -0.273 4.273 5 C 0.052 3.948 6 N -0.379 5.379 7 C 0.062 3.938 8 C -0.203 4.203 9 C -0.003 4.003 10 N -0.251 5.251 11 C 0.001 3.999 12 N -0.252 5.252 13 C -0.005 4.005 14 C -0.222 4.222 15 C -0.136 4.136 16 C 0.011 3.989 17 C -0.520 4.520 18 H 0.077 0.923 19 C -0.179 4.179 20 N -0.473 5.473 21 Si 0.794 3.206 22 H -0.190 1.190 23 H -0.189 1.189 24 H -0.196 1.196 25 H 0.068 0.932 26 H 0.071 0.929 27 H 0.127 0.873 28 H 0.141 0.859 29 H 0.228 0.772 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.201 0.799 33 H 0.239 0.761 34 H 0.198 0.802 35 H 0.133 0.867 36 H 0.125 0.875 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -9.978 12.161 -2.033 15.861 hybrid contribution 0.715 -1.264 0.048 1.453 sum -9.263 10.897 -1.985 14.439 Atomic orbital electron populations 1.23058 0.78730 1.04037 1.00896 1.85944 1.21451 1.28156 1.89915 1.19175 0.92027 0.83526 1.05530 1.20301 0.98428 0.90937 1.17624 1.17071 0.90165 0.85693 1.01881 1.43894 1.06817 1.01290 1.85875 1.19851 0.92002 0.79440 1.02520 1.21630 1.01842 1.00926 0.95912 1.23551 0.88792 0.88839 0.99108 1.68553 1.12399 1.12607 1.31539 1.25617 0.95608 0.96320 0.82363 1.68547 1.12651 1.12386 1.31578 1.23531 0.88805 0.88966 0.99154 1.20175 0.91961 0.97841 1.12206 1.20645 0.99083 0.91101 1.02725 1.17282 0.88657 0.94564 0.98446 1.19306 0.98437 0.96397 1.37852 0.92303 1.26472 0.99859 0.99133 0.92455 1.69915 1.19505 1.33040 1.24827 0.85324 0.77938 0.78520 0.78846 1.19028 1.18890 1.19558 0.93205 0.92888 0.87297 0.85880 0.77215 0.91472 0.91030 0.79885 0.76118 0.80157 0.86700 0.87512 0.90890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.90 9.81 113.37 1.11 2.01 16 2 O -0.34 -15.89 9.78 -89.88 -0.88 -16.77 16 3 C 0.04 2.13 6.71 23.02 0.15 2.29 16 4 C -0.25 -10.42 8.86 22.46 0.20 -10.22 16 5 C 0.15 5.90 6.66 38.61 0.26 6.15 16 6 N -0.74 -21.06 5.69 -342.80 -1.95 -23.01 16 7 C 0.19 4.22 5.06 85.63 0.43 4.66 16 8 C -0.20 -3.82 5.28 -19.69 -0.10 -3.93 16 9 C 0.16 3.07 11.01 84.70 0.93 4.00 16 10 N -0.54 -10.80 10.44 -200.05 -2.09 -12.89 16 11 C 0.29 5.22 12.29 180.88 2.22 7.44 16 12 N -0.54 -10.99 10.44 -200.05 -2.09 -13.08 16 13 C 0.16 3.12 11.01 84.70 0.93 4.05 16 14 C -0.20 -8.63 9.22 22.16 0.20 -8.42 16 15 C -0.12 -5.98 8.62 22.44 0.19 -5.78 16 16 C 0.01 0.76 5.58 -21.17 -0.12 0.64 16 17 C -0.49 -28.06 8.70 23.33 0.20 -27.86 16 18 H 0.06 3.44 7.64 -2.91 -0.02 3.42 16 19 C 0.03 1.68 5.13 85.21 0.44 2.12 16 20 N -0.84 -45.76 10.97 21.81 0.24 -45.52 16 21 Si 0.97 41.01 29.60 68.60 2.03 43.04 16 22 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 23 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 24 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 25 H 0.05 1.49 7.65 -2.39 -0.02 1.47 16 26 H 0.05 1.54 7.67 -2.39 -0.02 1.52 16 27 H 0.11 2.84 8.14 -2.39 -0.02 2.82 16 28 H 0.12 4.34 6.29 -2.91 -0.02 4.32 16 29 H 0.39 10.03 8.46 -92.71 -0.78 9.24 16 30 H 0.07 1.55 7.89 -2.39 -0.02 1.53 16 31 H 0.07 1.58 7.87 -2.39 -0.02 1.57 16 32 H 0.18 2.79 8.06 -2.91 -0.02 2.76 16 33 H 0.22 2.46 8.06 -2.91 -0.02 2.43 16 34 H 0.18 2.94 8.06 -2.91 -0.02 2.92 16 35 H 0.12 4.30 6.67 -2.91 -0.02 4.28 16 36 H 0.11 5.84 6.17 -2.91 -0.02 5.83 16 37 H 0.28 13.84 8.30 -92.71 -0.77 13.07 16 Total: -1.00 -67.20 319.13 2.65 -64.55 By element: Atomic # 1 Polarization: 26.22 SS G_CDS: 0.33 Total: 26.55 kcal Atomic # 6 Polarization: -29.92 SS G_CDS: 7.06 Total: -22.86 kcal Atomic # 7 Polarization: -88.62 SS G_CDS: -5.89 Total: -94.50 kcal Atomic # 8 Polarization: -15.89 SS G_CDS: -0.88 Total: -16.77 kcal Atomic # 14 Polarization: 41.01 SS G_CDS: 2.03 Total: 43.04 kcal Total: -67.20 2.65 -64.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167261033.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.196 kcal (2) G-P(sol) polarization free energy of solvation -67.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.550 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds