Wall clock time and date at job start Tue Mar 31 2020 05:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35964 * 116.99567 * 2 1 4 4 C 1.39415 * 119.82463 * 0.02562 * 3 2 1 5 5 C 1.38094 * 120.57208 * 180.02562 * 4 3 2 6 6 C 1.38709 * 120.20085 * 359.97438 * 5 4 3 7 7 N 1.38855 * 120.18066 * 179.97438 * 6 5 4 8 8 C 1.46495 * 119.99964 * 0.02562 * 7 6 5 9 9 C 1.50706 * 109.46886 * 179.97438 * 8 7 6 10 10 C 1.38593 * 120.79997 * 269.72124 * 9 8 7 11 11 N 1.32334 * 119.10123 * 179.72470 * 10 9 8 12 12 C 1.31790 * 120.82010 * 0.55921 * 11 10 9 13 13 N 1.31802 * 121.75419 * 359.71506 * 12 11 10 14 14 C 1.32330 * 120.81519 * 359.97438 * 13 12 11 15 15 C 1.41549 * 119.64024 * 359.97438 * 6 5 4 16 16 C 1.41027 * 120.28063 * 180.02562 * 15 6 5 17 17 H 1.08006 * 119.99303 * 333.58033 * 16 15 6 18 18 C 1.39895 * 120.00163 * 153.85520 * 16 15 6 19 19 N 1.30894 * 120.00120 * 343.84536 * 18 16 15 20 20 Si 1.86797 * 120.00040 * 163.84145 * 18 16 15 21 21 H 1.48502 * 109.46888 * 60.00185 * 20 18 16 22 22 H 1.48498 * 109.47344 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47308 * 300.00240 * 20 18 16 24 24 C 1.37840 * 119.81710 * 180.30267 * 3 2 1 25 25 H 1.09003 * 109.46961 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47379 * 299.99662 * 1 2 3 27 27 H 1.09002 * 109.47513 * 60.00060 * 1 2 3 28 28 H 1.08008 * 119.71288 * 359.97438 * 4 3 2 29 29 H 1.08000 * 119.89474 * 179.97438 * 5 4 3 30 30 H 0.97008 * 119.99843 * 180.02562 * 7 6 5 31 31 H 1.08994 * 109.47168 * 299.99290 * 8 7 6 32 32 H 1.09002 * 109.47475 * 60.00007 * 8 7 6 33 33 H 1.07997 * 120.45028 * 359.97438 * 10 9 8 34 34 H 1.08007 * 119.12517 * 179.73069 * 12 11 10 35 35 H 1.08006 * 120.44216 * 180.02562 * 14 13 12 36 36 H 0.97000 * 120.00313 * 179.97438 * 19 18 16 37 37 H 1.07998 * 120.11055 * 359.97438 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0462 1.2115 0.0000 4 6 1.2833 2.3783 0.0005 5 6 1.8940 3.6169 0.0000 6 6 3.2778 3.7125 -0.0005 7 7 3.8915 4.9581 -0.0016 8 6 3.0771 6.1758 -0.0016 9 6 3.9790 7.3832 -0.0022 10 6 4.3995 7.9555 1.1880 11 7 5.1957 9.0118 1.1482 12 6 5.5791 9.5254 -0.0033 13 7 5.1948 9.0112 -1.1545 14 6 4.4035 7.9513 -1.1930 15 6 4.0610 2.5334 0.0000 16 6 5.4689 2.6149 0.0000 17 1 5.9595 3.4822 -0.4165 18 6 6.2301 1.5698 0.5344 19 7 5.6650 0.6775 1.3075 20 14 8.0528 1.4477 0.1444 21 1 8.7436 2.6737 0.6188 22 1 8.6268 0.2608 0.8278 23 1 8.2371 1.3120 -1.3228 24 6 3.4230 1.2793 -0.0063 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 0.2052 2.3130 0.0005 29 1 1.2923 4.5138 0.0000 30 1 4.8594 5.0219 -0.0023 31 1 2.4475 6.1918 -0.8911 32 1 2.4486 6.1927 0.8889 33 1 4.0850 7.5426 2.1350 34 1 6.2258 10.3905 -0.0038 35 1 4.0926 7.5346 -2.1397 36 1 6.1927 -0.0474 1.6777 37 1 4.0101 0.3729 -0.0108 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167266203.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:06 Heat of formation + Delta-G solvation = 36.114113 kcal Electronic energy + Delta-G solvation = -21341.125511 eV Core-core repulsion = 18083.762762 eV Total energy + Delta-G solvation = -3257.362749 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.122 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.04107 -38.71307 -37.10358 -34.90810 -33.73929 -33.39694 -31.79839 -29.73047 -28.27320 -26.55185 -25.39161 -24.85728 -24.61746 -22.74113 -20.75462 -19.99043 -17.69698 -17.64372 -17.58861 -16.49850 -15.90643 -15.41424 -14.83459 -14.70755 -14.56207 -14.29529 -13.76561 -13.67464 -13.63303 -13.29259 -13.07614 -12.38598 -12.16264 -11.73396 -11.50811 -11.34307 -11.12967 -11.04303 -10.86536 -10.83755 -10.55830 -10.25878 -10.03578 -9.64107 -9.34372 -9.28919 -9.12860 -8.44460 -7.43611 -6.74983 -6.04986 -4.23687 0.78961 1.02019 2.78385 3.07935 3.09553 3.13793 3.22432 3.68325 3.94595 4.07696 4.16175 4.40999 4.54327 4.61079 4.66886 4.81423 4.86093 5.35977 5.58726 5.68532 5.73482 5.80504 5.82725 5.95909 6.05168 6.13614 6.32278 6.34738 6.83206 6.86273 6.94555 7.14048 7.40502 7.50280 7.59047 7.86736 7.99020 8.02475 8.20879 8.54751 8.72688 8.82790 8.91793 9.06979 10.24430 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.012431 B = 0.005371 C = 0.003938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2251.936006 B = 5211.627726 C = 7109.058987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.331 6.331 3 C 0.095 3.905 4 C -0.278 4.278 5 C -0.146 4.146 6 C 0.090 3.910 7 N -0.746 5.746 8 C 0.185 3.815 9 C -0.195 4.195 10 C 0.164 3.836 11 N -0.523 5.523 12 C 0.287 3.713 13 N -0.523 5.523 14 C 0.162 3.838 15 C 0.101 3.899 16 C -0.463 4.463 17 H 0.073 0.927 18 C 0.078 3.922 19 N -0.791 5.791 20 Si 0.903 3.097 21 H -0.268 1.268 22 H -0.278 1.278 23 H -0.265 1.265 24 C -0.171 4.171 25 H 0.080 0.920 26 H 0.042 0.958 27 H 0.042 0.958 28 H 0.093 0.907 29 H 0.091 0.909 30 H 0.395 0.605 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.169 0.831 34 H 0.194 0.806 35 H 0.169 0.831 36 H 0.280 0.720 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.698 8.913 -1.731 9.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.246 6.246 3 C 0.051 3.949 4 C -0.298 4.298 5 C -0.170 4.170 6 C -0.008 4.008 7 N -0.383 5.383 8 C 0.059 3.941 9 C -0.199 4.199 10 C -0.003 4.003 11 N -0.236 5.236 12 C -0.001 4.001 13 N -0.236 5.236 14 C -0.004 4.004 15 C 0.097 3.903 16 C -0.493 4.493 17 H 0.091 0.909 18 C -0.140 4.140 19 N -0.416 5.416 20 Si 0.728 3.272 21 H -0.193 1.193 22 H -0.203 1.203 23 H -0.189 1.189 24 C -0.192 4.192 25 H 0.098 0.902 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.111 0.889 29 H 0.109 0.891 30 H 0.231 0.769 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.187 0.813 34 H 0.210 0.790 35 H 0.186 0.814 36 H 0.091 0.909 37 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -3.103 9.417 -1.576 10.040 hybrid contribution 0.348 -0.641 -0.020 0.729 sum -2.755 8.776 -1.595 9.336 Atomic orbital electron populations 1.22706 0.81188 1.01595 1.00274 1.86005 1.19096 1.29144 1.90347 1.18820 0.92397 0.82415 1.01280 1.20180 0.96982 0.92142 1.20545 1.19754 0.92121 0.95742 1.09366 1.17797 0.91019 0.84792 1.07167 1.43841 1.07217 1.00832 1.86417 1.19756 0.91571 0.81375 1.01422 1.21886 1.02187 1.00252 0.95609 1.23261 0.89125 0.89257 0.98609 1.68454 1.12332 1.11759 1.31042 1.24969 0.94631 0.97619 0.82915 1.68455 1.12441 1.11667 1.31086 1.23244 0.89252 0.89347 0.98541 1.16931 0.92699 0.88495 0.92199 1.19073 0.90816 1.03703 1.35719 0.90923 1.25785 1.00659 0.94738 0.92818 1.69842 1.38285 1.11492 1.21988 0.86450 0.82422 0.78495 0.79822 1.19294 1.20334 1.18920 1.20307 0.89267 0.98566 1.11050 0.90167 0.93896 0.93955 0.88881 0.89099 0.76936 0.92244 0.92249 0.81340 0.78972 0.81383 0.90874 0.85666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.63 9.81 101.05 0.99 1.62 16 2 O -0.33 -7.38 10.49 -19.63 -0.21 -7.59 16 3 C 0.10 2.30 6.67 -39.29 -0.26 2.04 16 4 C -0.28 -6.12 9.03 -39.20 -0.35 -6.47 16 5 C -0.15 -3.12 9.28 -39.46 -0.37 -3.48 16 6 C 0.09 2.03 6.68 -83.25 -0.56 1.47 16 7 N -0.75 -13.87 5.63 -59.35 -0.33 -14.20 16 8 C 0.19 2.63 5.08 -5.19 -0.03 2.60 16 9 C -0.19 -2.50 5.28 -104.36 -0.55 -3.05 16 10 C 0.16 2.09 11.01 -17.20 -0.19 1.90 16 11 N -0.52 -6.87 10.44 -14.58 -0.15 -7.02 16 12 C 0.29 3.44 12.29 -92.15 -1.13 2.31 16 13 N -0.52 -6.79 10.44 -14.58 -0.15 -6.94 16 14 C 0.16 2.03 11.01 -17.20 -0.19 1.84 16 15 C 0.10 2.59 5.57 -106.65 -0.59 1.99 16 16 C -0.46 -11.69 8.48 -37.91 -0.32 -12.01 16 17 H 0.07 1.74 6.71 -52.48 -0.35 1.39 16 18 C 0.08 1.93 5.16 -17.33 -0.09 1.84 16 19 N -0.79 -20.50 10.99 55.55 0.61 -19.89 16 20 Si 0.90 18.65 29.59 -169.99 -5.03 13.62 16 21 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 22 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 23 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 24 C -0.17 -4.50 8.59 -38.80 -0.33 -4.83 16 25 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 26 H 0.04 0.67 7.65 -51.93 -0.40 0.27 16 27 H 0.04 0.64 7.65 -51.93 -0.40 0.25 16 28 H 0.09 1.81 6.26 -52.48 -0.33 1.48 16 29 H 0.09 1.67 6.71 -52.49 -0.35 1.32 16 30 H 0.40 7.59 6.69 -40.82 -0.27 7.32 16 31 H 0.06 0.80 7.90 -51.93 -0.41 0.39 16 32 H 0.06 0.82 7.90 -51.93 -0.41 0.41 16 33 H 0.17 1.89 8.06 -52.49 -0.42 1.46 16 34 H 0.19 1.65 8.06 -52.48 -0.42 1.22 16 35 H 0.17 1.80 8.06 -52.48 -0.42 1.37 16 36 H 0.28 6.70 8.30 -40.82 -0.34 6.37 16 37 H 0.13 3.50 6.24 -52.49 -0.33 3.17 16 LS Contribution 317.14 15.07 4.78 4.78 Total: -1.00 -29.26 317.14 -8.53 -37.80 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: -4.07 Total: 11.69 kcal Atomic # 6 Polarization: -8.27 SS G_CDS: -3.97 Total: -12.24 kcal Atomic # 7 Polarization: -48.03 SS G_CDS: -0.03 Total: -48.06 kcal Atomic # 8 Polarization: -7.38 SS G_CDS: -0.21 Total: -7.59 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -5.03 Total: 13.62 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -29.26 -8.53 -37.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167266203.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.911 kcal (2) G-P(sol) polarization free energy of solvation -29.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds