Wall clock time and date at job start Tue Mar 31 2020 05:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35964 * 116.99567 * 2 1 4 4 C 1.39415 * 119.82463 * 0.02562 * 3 2 1 5 5 C 1.38094 * 120.57208 * 180.02562 * 4 3 2 6 6 C 1.38709 * 120.20085 * 359.97438 * 5 4 3 7 7 N 1.38855 * 120.18066 * 179.97438 * 6 5 4 8 8 C 1.46495 * 119.99964 * 0.02562 * 7 6 5 9 9 C 1.50706 * 109.46886 * 179.97438 * 8 7 6 10 10 C 1.38593 * 120.79997 * 269.72124 * 9 8 7 11 11 N 1.32334 * 119.10123 * 179.72470 * 10 9 8 12 12 C 1.31790 * 120.82010 * 0.55921 * 11 10 9 13 13 N 1.31802 * 121.75419 * 359.71506 * 12 11 10 14 14 C 1.32330 * 120.81519 * 359.97438 * 13 12 11 15 15 C 1.41549 * 119.64024 * 359.97438 * 6 5 4 16 16 C 1.41027 * 120.28063 * 180.02562 * 15 6 5 17 17 H 1.08006 * 119.99303 * 333.58033 * 16 15 6 18 18 C 1.39895 * 120.00163 * 153.85520 * 16 15 6 19 19 N 1.30894 * 120.00120 * 343.84536 * 18 16 15 20 20 Si 1.86797 * 120.00040 * 163.84145 * 18 16 15 21 21 H 1.48502 * 109.46888 * 60.00185 * 20 18 16 22 22 H 1.48498 * 109.47344 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47308 * 300.00240 * 20 18 16 24 24 C 1.37840 * 119.81710 * 180.30267 * 3 2 1 25 25 H 1.09003 * 109.46961 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47379 * 299.99662 * 1 2 3 27 27 H 1.09002 * 109.47513 * 60.00060 * 1 2 3 28 28 H 1.08008 * 119.71288 * 359.97438 * 4 3 2 29 29 H 1.08000 * 119.89474 * 179.97438 * 5 4 3 30 30 H 0.97008 * 119.99843 * 180.02562 * 7 6 5 31 31 H 1.08994 * 109.47168 * 299.99290 * 8 7 6 32 32 H 1.09002 * 109.47475 * 60.00007 * 8 7 6 33 33 H 1.07997 * 120.45028 * 359.97438 * 10 9 8 34 34 H 1.08007 * 119.12517 * 179.73069 * 12 11 10 35 35 H 1.08006 * 120.44216 * 180.02562 * 14 13 12 36 36 H 0.97000 * 120.00313 * 179.97438 * 19 18 16 37 37 H 1.07998 * 120.11055 * 359.97438 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0462 1.2115 0.0000 4 6 1.2833 2.3783 0.0005 5 6 1.8940 3.6169 0.0000 6 6 3.2778 3.7125 -0.0005 7 7 3.8915 4.9581 -0.0016 8 6 3.0771 6.1758 -0.0016 9 6 3.9790 7.3832 -0.0022 10 6 4.3995 7.9555 1.1880 11 7 5.1957 9.0118 1.1482 12 6 5.5791 9.5254 -0.0033 13 7 5.1948 9.0112 -1.1545 14 6 4.4035 7.9513 -1.1930 15 6 4.0610 2.5334 0.0000 16 6 5.4689 2.6149 0.0000 17 1 5.9595 3.4822 -0.4165 18 6 6.2301 1.5698 0.5344 19 7 5.6650 0.6775 1.3075 20 14 8.0528 1.4477 0.1444 21 1 8.7436 2.6737 0.6188 22 1 8.6268 0.2608 0.8278 23 1 8.2371 1.3120 -1.3228 24 6 3.4230 1.2793 -0.0063 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 0.2052 2.3130 0.0005 29 1 1.2923 4.5138 0.0000 30 1 4.8594 5.0219 -0.0023 31 1 2.4475 6.1918 -0.8911 32 1 2.4486 6.1927 0.8889 33 1 4.0850 7.5426 2.1350 34 1 6.2258 10.3905 -0.0038 35 1 4.0926 7.5346 -2.1397 36 1 6.1927 -0.0474 1.6777 37 1 4.0101 0.3729 -0.0108 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167266203.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:06 Heat of formation + Delta-G solvation = 18.622540 kcal Electronic energy + Delta-G solvation = -21341.884002 eV Core-core repulsion = 18083.762762 eV Total energy + Delta-G solvation = -3258.121240 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.122 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.00628 -40.40063 -38.68666 -36.35771 -35.12281 -34.70194 -33.09494 -31.52211 -29.77492 -27.88358 -26.98026 -26.43233 -25.57978 -23.94982 -22.41521 -21.65033 -19.41757 -18.58928 -18.56616 -18.10872 -17.58058 -16.91909 -16.46473 -16.22780 -15.82112 -15.59595 -15.11627 -14.75625 -14.69668 -14.57953 -14.41799 -13.98562 -13.79968 -13.41828 -13.13678 -12.90988 -12.76922 -12.60721 -12.25316 -11.89666 -11.84726 -11.81874 -11.70630 -11.16975 -10.95307 -10.55650 -10.27944 -9.98579 -9.28469 -8.58082 -7.74625 -6.10010 -0.17463 0.05629 1.01942 1.35410 1.38144 1.47747 1.53737 2.22139 2.66935 2.81244 2.93865 3.20563 3.23528 3.25014 3.63671 3.72027 3.78797 3.90561 4.40772 4.47799 4.53236 4.56781 4.61879 4.67108 4.74151 4.79307 5.01413 5.11046 5.16549 5.31652 5.39154 5.61295 5.75252 5.85377 5.91878 6.04232 6.23893 6.38839 6.81422 6.98430 7.04570 7.06456 7.22291 7.33774 8.43633 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.012431 B = 0.005371 C = 0.003938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2251.936006 B = 5211.627726 C = 7109.058987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.357 6.357 3 C 0.078 3.922 4 C -0.269 4.269 5 C -0.151 4.151 6 C 0.094 3.906 7 N -0.744 5.744 8 C 0.188 3.812 9 C -0.198 4.198 10 C 0.159 3.841 11 N -0.538 5.538 12 C 0.286 3.714 13 N -0.537 5.537 14 C 0.161 3.839 15 C 0.067 3.933 16 C -0.487 4.487 17 H 0.078 0.922 18 C 0.035 3.965 19 N -0.830 5.830 20 Si 0.971 3.029 21 H -0.261 1.261 22 H -0.274 1.274 23 H -0.263 1.263 24 C -0.202 4.202 25 H 0.111 0.889 26 H 0.051 0.949 27 H 0.055 0.945 28 H 0.123 0.877 29 H 0.127 0.873 30 H 0.390 0.610 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.180 0.820 34 H 0.223 0.777 35 H 0.184 0.816 36 H 0.282 0.718 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.521 10.681 -2.116 11.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.273 6.273 3 C 0.033 3.967 4 C -0.290 4.290 5 C -0.174 4.174 6 C -0.006 4.006 7 N -0.379 5.379 8 C 0.063 3.937 9 C -0.203 4.203 10 C -0.006 4.006 11 N -0.252 5.252 12 C -0.001 4.001 13 N -0.251 5.251 14 C -0.005 4.005 15 C 0.063 3.937 16 C -0.517 4.517 17 H 0.096 0.904 18 C -0.179 4.179 19 N -0.457 5.457 20 Si 0.793 3.207 21 H -0.185 1.185 22 H -0.199 1.199 23 H -0.188 1.188 24 C -0.224 4.224 25 H 0.129 0.871 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.141 0.859 29 H 0.145 0.855 30 H 0.225 0.775 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.197 0.803 34 H 0.239 0.761 35 H 0.201 0.799 36 H 0.093 0.907 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -3.947 11.221 -1.964 12.056 hybrid contribution 0.447 -1.121 0.089 1.210 sum -3.501 10.100 -1.875 10.853 Atomic orbital electron populations 1.23067 0.78095 1.04131 1.01259 1.85958 1.22348 1.28651 1.90314 1.18931 0.92096 0.83907 1.01735 1.20555 0.98428 0.91562 1.18412 1.20130 0.91914 0.96900 1.08487 1.17915 0.91583 0.85415 1.05663 1.43957 1.07367 1.01028 1.85554 1.19884 0.91456 0.79902 1.02464 1.21693 1.02729 1.00006 0.95856 1.23513 0.88779 0.89163 0.99173 1.68524 1.12884 1.12172 1.31620 1.25611 0.94161 0.97963 0.82391 1.68536 1.12953 1.12066 1.31522 1.23543 0.88685 0.89100 0.99124 1.17257 0.93457 0.89533 0.93471 1.19320 0.91335 1.04491 1.36555 0.90428 1.26588 1.04836 0.94199 0.92287 1.69943 1.39927 1.12383 1.23440 0.85419 0.77196 0.78675 0.79406 1.18501 1.19868 1.18799 1.20250 0.90516 0.98041 1.13582 0.87099 0.93007 0.92612 0.85890 0.85537 0.77541 0.90761 0.91249 0.80283 0.76061 0.79886 0.90749 0.88785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.90 9.81 113.37 1.11 2.01 16 2 O -0.36 -15.99 10.49 -93.14 -0.98 -16.97 16 3 C 0.08 3.82 6.67 22.46 0.15 3.97 16 4 C -0.27 -11.39 9.03 22.52 0.20 -11.19 16 5 C -0.15 -6.09 9.28 22.35 0.21 -5.88 16 6 C 0.09 4.17 6.68 38.96 0.26 4.43 16 7 N -0.74 -26.73 5.63 -341.69 -1.92 -28.66 16 8 C 0.19 4.86 5.08 85.64 0.43 5.30 16 9 C -0.20 -4.67 5.28 -19.69 -0.10 -4.77 16 10 C 0.16 3.78 11.01 84.70 0.93 4.71 16 11 N -0.54 -13.17 10.44 -200.04 -2.09 -15.25 16 12 C 0.29 6.26 12.29 180.88 2.22 8.48 16 13 N -0.54 -12.84 10.44 -200.04 -2.09 -14.92 16 14 C 0.16 3.69 11.01 84.70 0.93 4.62 16 15 C 0.07 3.53 5.57 -21.18 -0.12 3.42 16 16 C -0.49 -25.30 8.48 23.36 0.20 -25.10 16 17 H 0.08 3.79 6.71 -2.91 -0.02 3.77 16 18 C 0.03 1.77 5.16 85.23 0.44 2.21 16 19 N -0.83 -45.08 10.99 21.82 0.24 -44.84 16 20 Si 0.97 39.14 29.59 68.60 2.03 41.17 16 21 H -0.26 -10.08 7.11 99.48 0.71 -9.38 16 22 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 23 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 24 C -0.20 -11.12 8.59 22.78 0.20 -10.93 16 25 H 0.11 2.67 8.14 -2.39 -0.02 2.65 16 26 H 0.05 1.49 7.65 -2.39 -0.02 1.47 16 27 H 0.06 1.55 7.65 -2.39 -0.02 1.54 16 28 H 0.12 4.37 6.26 -2.91 -0.02 4.36 16 29 H 0.13 4.15 6.71 -2.91 -0.02 4.13 16 30 H 0.39 14.77 6.69 -92.70 -0.62 14.15 16 31 H 0.07 1.75 7.90 -2.39 -0.02 1.73 16 32 H 0.07 1.70 7.90 -2.39 -0.02 1.68 16 33 H 0.18 3.70 8.06 -2.91 -0.02 3.68 16 34 H 0.22 3.22 8.06 -2.91 -0.02 3.19 16 35 H 0.18 3.49 8.06 -2.91 -0.02 3.46 16 36 H 0.28 14.15 8.30 -92.71 -0.77 13.38 16 37 H 0.09 5.64 6.24 -2.91 -0.02 5.62 16 Total: -1.00 -65.26 317.14 2.75 -62.51 By element: Atomic # 1 Polarization: 35.20 SS G_CDS: 0.49 Total: 35.69 kcal Atomic # 6 Polarization: -25.80 SS G_CDS: 7.07 Total: -18.73 kcal Atomic # 7 Polarization: -97.82 SS G_CDS: -5.86 Total: -103.68 kcal Atomic # 8 Polarization: -15.99 SS G_CDS: -0.98 Total: -16.97 kcal Atomic # 14 Polarization: 39.14 SS G_CDS: 2.03 Total: 41.17 kcal Total: -65.26 2.75 -62.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167266203.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.134 kcal (2) G-P(sol) polarization free energy of solvation -65.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds