Wall clock time and date at job start Tue Mar 31 2020 05:22:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35670 * 117.00334 * 2 1 4 4 C 1.38037 * 120.20728 * 359.97438 * 3 2 1 5 5 C 1.39220 * 119.98136 * 180.02562 * 4 3 2 6 6 N 1.38917 * 119.79909 * 179.97438 * 5 4 3 7 7 C 1.46497 * 119.99950 * 179.97438 * 6 5 4 8 8 C 1.50706 * 109.47377 * 180.02562 * 7 6 5 9 9 C 1.38603 * 120.07203 * 94.72557 * 8 7 6 10 10 C 1.38888 * 117.96748 * 179.74128 * 9 8 7 11 11 C 1.38601 * 117.96502 * 0.52546 * 10 9 8 12 12 N 1.31933 * 119.84965 * 359.73291 * 11 10 9 13 13 N 1.28343 * 122.18363 * 359.97438 * 12 11 10 14 14 C 1.39720 * 120.40245 * 0.02562 * 5 4 3 15 15 C 1.36237 * 120.42772 * 359.68937 * 14 5 4 16 16 C 1.40848 * 120.00647 * 0.56795 * 15 14 5 17 17 C 1.40969 * 120.19708 * 179.73660 * 16 15 14 18 18 H 1.07998 * 120.00067 * 205.28329 * 17 16 15 19 19 C 1.39847 * 119.99973 * 25.29240 * 17 16 15 20 20 N 1.30948 * 120.00164 * 17.43147 * 19 17 16 21 21 Si 1.86801 * 119.99844 * 197.43432 * 19 17 16 22 22 H 1.48494 * 109.47356 * 265.18873 * 21 19 17 23 23 H 1.48496 * 109.47081 * 25.19210 * 21 19 17 24 24 H 1.48507 * 109.46645 * 145.19099 * 21 19 17 25 25 H 1.09003 * 109.47218 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47623 * 300.00157 * 1 2 3 27 27 H 1.08997 * 109.46832 * 60.00450 * 1 2 3 28 28 H 1.07999 * 120.01229 * 0.03694 * 4 3 2 29 29 H 0.97003 * 120.00261 * 0.02562 * 6 5 4 30 30 H 1.08996 * 109.47608 * 300.00820 * 7 6 5 31 31 H 1.09005 * 109.46975 * 60.00595 * 7 6 5 32 32 H 1.08004 * 121.02009 * 0.02562 * 9 8 7 33 33 H 1.08001 * 121.01538 * 180.23305 * 10 9 8 34 34 H 1.08001 * 120.07834 * 179.75108 * 11 10 9 35 35 H 1.07996 * 119.78699 * 179.97438 * 14 5 4 36 36 H 1.08000 * 119.99164 * 180.30128 * 15 14 5 37 37 H 0.96998 * 120.00256 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 1.2974 2.3692 -0.0005 5 6 1.9344 3.6071 -0.0011 6 7 1.1784 4.7726 -0.0021 7 6 1.8441 6.0775 -0.0021 8 6 0.8068 7.1708 -0.0028 9 6 0.3999 7.7428 1.1923 10 6 -0.5544 8.7505 1.1405 11 6 -1.0490 9.1140 -0.1022 12 7 -0.6060 8.5091 -1.1878 13 7 0.2801 7.5819 -1.1404 14 6 3.3295 3.6845 -0.0016 15 6 4.0834 2.5498 0.0047 16 6 3.4574 1.2881 -0.0002 17 6 4.2336 0.1114 0.0008 18 1 3.8267 -0.8043 -0.4020 19 6 5.5306 0.1297 0.5235 20 7 5.9068 1.1088 1.3074 21 14 6.7264 -1.2426 0.1034 22 1 6.6880 -2.2761 1.1690 23 1 6.3417 -1.8545 -1.1938 24 1 8.1001 -0.6878 0.0011 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 0.2187 2.3169 -0.0003 29 1 0.2097 4.7223 -0.0021 30 1 2.4664 6.1681 0.8882 31 1 2.4676 6.1673 -0.8918 32 1 0.8157 7.4182 2.1348 33 1 -0.9040 9.2328 2.0414 34 1 -1.7951 9.8908 -0.1818 35 1 3.8133 4.6500 -0.0024 36 1 5.1613 2.6178 0.0092 37 1 6.8065 1.1217 1.6697 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167327772.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:59 Heat of formation + Delta-G solvation = 51.304232 kcal Electronic energy + Delta-G solvation = -21070.073182 eV Core-core repulsion = 17813.369126 eV Total energy + Delta-G solvation = -3256.704055 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.122 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.19507 -38.73005 -36.89999 -35.16515 -33.57805 -33.28214 -31.97017 -29.16625 -28.82975 -26.63228 -26.42721 -24.79884 -24.04011 -22.88544 -20.93111 -20.06392 -17.63109 -17.34949 -17.21954 -16.83752 -16.20069 -15.26922 -15.03783 -14.79265 -14.59748 -14.28936 -13.97494 -13.74312 -13.69752 -13.35293 -12.86562 -12.65355 -12.17862 -11.72682 -11.43080 -11.13105 -11.02807 -10.99494 -10.67303 -10.49106 -10.44168 -10.27364 -10.12257 -9.83799 -9.71927 -9.51084 -9.10973 -8.43428 -7.13191 -6.62501 -6.40667 -3.92829 0.57629 0.64271 2.91224 3.01299 3.19811 3.25378 3.29216 3.33501 3.79214 4.12043 4.19710 4.33770 4.40520 4.46491 4.57712 4.73611 4.78015 5.00209 5.39345 5.55203 5.70408 5.74239 5.80306 5.88102 5.97686 6.00143 6.00955 6.17450 6.38379 6.73035 6.95257 7.11525 7.34449 7.51391 7.74031 7.95807 8.10288 8.36829 8.52453 8.53815 8.58587 8.85825 9.05031 9.22498 10.43401 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.024774 B = 0.003548 C = 0.003227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.966756 B = 7889.662838 C = 8674.823356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.309 6.309 3 C 0.050 3.950 4 C -0.240 4.240 5 C 0.126 3.874 6 N -0.752 5.752 7 C 0.192 3.808 8 C 0.064 3.936 9 C -0.103 4.103 10 C -0.122 4.122 11 C 0.034 3.966 12 N -0.245 5.245 13 N -0.227 5.227 14 C -0.188 4.188 15 C -0.102 4.102 16 C 0.063 3.937 17 C -0.449 4.449 18 H 0.077 0.923 19 C 0.072 3.928 20 N -0.812 5.812 21 Si 0.903 3.097 22 H -0.274 1.274 23 H -0.263 1.263 24 H -0.279 1.279 25 H 0.080 0.920 26 H 0.039 0.961 27 H 0.039 0.961 28 H 0.095 0.905 29 H 0.385 0.615 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.153 0.847 33 H 0.150 0.850 34 H 0.171 0.829 35 H 0.091 0.909 36 H 0.126 0.874 37 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.579 11.922 2.257 15.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.223 6.223 3 C 0.004 3.996 4 C -0.262 4.262 5 C 0.028 3.972 6 N -0.389 5.389 7 C 0.066 3.934 8 C -0.081 4.081 9 C -0.133 4.133 10 C -0.151 4.151 11 C -0.130 4.130 12 N -0.086 5.086 13 N -0.070 5.070 14 C -0.210 4.210 15 C -0.122 4.122 16 C 0.060 3.940 17 C -0.480 4.480 18 H 0.095 0.905 19 C -0.142 4.142 20 N -0.441 5.441 21 Si 0.729 3.271 22 H -0.200 1.200 23 H -0.187 1.187 24 H -0.204 1.204 25 H 0.099 0.901 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.113 0.887 29 H 0.217 0.783 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.171 0.829 33 H 0.168 0.832 34 H 0.188 0.812 35 H 0.109 0.891 36 H 0.144 0.856 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -9.183 11.775 0.722 14.950 hybrid contribution -0.137 -0.116 1.649 1.659 sum -9.320 11.659 2.371 15.113 Atomic orbital electron populations 1.22715 0.81899 1.01622 0.99834 1.85993 1.18096 1.28252 1.90006 1.18964 0.92171 0.82078 1.06348 1.20031 0.97100 0.91430 1.17675 1.16962 0.90337 0.84229 1.05627 1.43683 1.06469 1.01306 1.87409 1.19814 0.91010 0.80088 1.02533 1.23119 0.97165 0.97342 0.90510 1.22430 0.95781 0.94869 1.00192 1.22451 0.96106 0.96648 0.99880 1.24354 0.99137 0.99433 0.90123 1.73097 1.05446 1.02758 1.27310 1.73055 1.03449 1.05594 1.24861 1.20015 0.91150 0.97874 1.11968 1.20695 0.99562 0.90212 1.01764 1.16932 0.87057 0.94089 0.95949 1.19214 0.97116 0.96633 1.35076 0.90487 1.25766 0.98782 0.96657 0.93022 1.69859 1.19197 1.31330 1.23671 0.86382 0.79429 0.81385 0.79940 1.19954 1.18674 1.20385 0.90116 0.94262 0.94290 0.88661 0.78307 0.91106 0.90843 0.82909 0.83189 0.81189 0.89067 0.85612 0.91432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.62 9.81 101.05 0.99 1.61 16 2 O -0.31 -7.29 9.79 -18.71 -0.18 -7.48 16 3 C 0.05 1.25 6.71 -38.43 -0.26 0.99 16 4 C -0.24 -5.34 8.86 -39.29 -0.35 -5.69 16 5 C 0.13 2.68 6.66 -83.73 -0.56 2.12 16 6 N -0.75 -12.90 5.69 -59.71 -0.34 -13.24 16 7 C 0.19 2.79 5.22 -5.19 -0.03 2.76 16 8 C 0.06 0.82 6.23 -82.41 -0.51 0.31 16 9 C -0.10 -1.00 9.86 -39.21 -0.39 -1.38 16 10 C -0.12 -0.94 10.21 -39.21 -0.40 -1.34 16 11 C 0.03 0.31 11.31 -17.37 -0.20 0.11 16 12 N -0.25 -3.27 11.50 30.55 0.35 -2.92 16 13 N -0.23 -3.36 11.43 33.59 0.38 -2.98 16 14 C -0.19 -4.27 9.22 -39.75 -0.37 -4.64 16 15 C -0.10 -2.63 8.62 -39.31 -0.34 -2.97 16 16 C 0.06 1.71 5.58 -106.65 -0.59 1.12 16 17 C -0.45 -12.44 8.69 -37.95 -0.33 -12.77 16 18 H 0.08 2.14 7.66 -52.49 -0.40 1.73 16 19 C 0.07 1.87 5.13 -17.33 -0.09 1.78 16 20 N -0.81 -21.46 10.98 55.54 0.61 -20.85 16 21 Si 0.90 19.57 29.59 -169.99 -5.03 14.54 16 22 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 23 H -0.26 -5.68 7.11 56.52 0.40 -5.28 16 24 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 25 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 26 H 0.04 0.64 7.66 -51.93 -0.40 0.24 16 27 H 0.04 0.63 7.66 -51.93 -0.40 0.24 16 28 H 0.10 1.89 6.29 -52.49 -0.33 1.55 16 29 H 0.38 6.18 8.46 -40.82 -0.35 5.84 16 30 H 0.07 0.95 7.84 -51.93 -0.41 0.55 16 31 H 0.07 1.14 7.92 -51.93 -0.41 0.73 16 32 H 0.15 1.16 8.06 -52.48 -0.42 0.74 16 33 H 0.15 0.61 8.06 -52.49 -0.42 0.19 16 34 H 0.17 0.92 8.06 -52.49 -0.42 0.49 16 35 H 0.09 1.85 6.67 -52.49 -0.35 1.50 16 36 H 0.13 3.34 6.19 -52.49 -0.32 3.02 16 37 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 LS Contribution 319.40 15.07 4.81 4.81 Total: -1.00 -31.44 319.40 -7.00 -38.45 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -4.19 Total: 7.65 kcal Atomic # 6 Polarization: -14.57 SS G_CDS: -3.42 Total: -17.99 kcal Atomic # 7 Polarization: -40.99 SS G_CDS: 1.01 Total: -39.99 kcal Atomic # 8 Polarization: -7.29 SS G_CDS: -0.18 Total: -7.48 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.03 Total: 14.54 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.44 -7.00 -38.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167327772.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.751 kcal (2) G-P(sol) polarization free energy of solvation -31.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds