Wall clock time and date at job start Tue Mar 31 2020 05:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35670 * 117.00334 * 2 1 4 4 C 1.38037 * 120.20728 * 359.97438 * 3 2 1 5 5 C 1.39220 * 119.98136 * 180.02562 * 4 3 2 6 6 N 1.38917 * 119.79909 * 179.97438 * 5 4 3 7 7 C 1.46497 * 119.99950 * 179.97438 * 6 5 4 8 8 C 1.50706 * 109.47377 * 180.02562 * 7 6 5 9 9 C 1.38603 * 120.07203 * 94.72557 * 8 7 6 10 10 C 1.38888 * 117.96748 * 179.74128 * 9 8 7 11 11 C 1.38601 * 117.96502 * 0.52546 * 10 9 8 12 12 N 1.31933 * 119.84965 * 359.73291 * 11 10 9 13 13 N 1.28343 * 122.18363 * 359.97438 * 12 11 10 14 14 C 1.39720 * 120.40245 * 0.02562 * 5 4 3 15 15 C 1.36237 * 120.42772 * 359.68937 * 14 5 4 16 16 C 1.40848 * 120.00647 * 0.56795 * 15 14 5 17 17 C 1.40969 * 120.19708 * 179.73660 * 16 15 14 18 18 H 1.07998 * 120.00067 * 205.28329 * 17 16 15 19 19 C 1.39847 * 119.99973 * 25.29240 * 17 16 15 20 20 N 1.30948 * 120.00164 * 17.43147 * 19 17 16 21 21 Si 1.86801 * 119.99844 * 197.43432 * 19 17 16 22 22 H 1.48494 * 109.47356 * 265.18873 * 21 19 17 23 23 H 1.48496 * 109.47081 * 25.19210 * 21 19 17 24 24 H 1.48507 * 109.46645 * 145.19099 * 21 19 17 25 25 H 1.09003 * 109.47218 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47623 * 300.00157 * 1 2 3 27 27 H 1.08997 * 109.46832 * 60.00450 * 1 2 3 28 28 H 1.07999 * 120.01229 * 0.03694 * 4 3 2 29 29 H 0.97003 * 120.00261 * 0.02562 * 6 5 4 30 30 H 1.08996 * 109.47608 * 300.00820 * 7 6 5 31 31 H 1.09005 * 109.46975 * 60.00595 * 7 6 5 32 32 H 1.08004 * 121.02009 * 0.02562 * 9 8 7 33 33 H 1.08001 * 121.01538 * 180.23305 * 10 9 8 34 34 H 1.08001 * 120.07834 * 179.75108 * 11 10 9 35 35 H 1.07996 * 119.78699 * 179.97438 * 14 5 4 36 36 H 1.08000 * 119.99164 * 180.30128 * 15 14 5 37 37 H 0.96998 * 120.00256 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 1.2974 2.3692 -0.0005 5 6 1.9344 3.6071 -0.0011 6 7 1.1784 4.7726 -0.0021 7 6 1.8441 6.0775 -0.0021 8 6 0.8068 7.1708 -0.0028 9 6 0.3999 7.7428 1.1923 10 6 -0.5544 8.7505 1.1405 11 6 -1.0490 9.1140 -0.1022 12 7 -0.6060 8.5091 -1.1878 13 7 0.2801 7.5819 -1.1404 14 6 3.3295 3.6845 -0.0016 15 6 4.0834 2.5498 0.0047 16 6 3.4574 1.2881 -0.0002 17 6 4.2336 0.1114 0.0008 18 1 3.8267 -0.8043 -0.4020 19 6 5.5306 0.1297 0.5235 20 7 5.9068 1.1088 1.3074 21 14 6.7264 -1.2426 0.1034 22 1 6.6880 -2.2761 1.1690 23 1 6.3417 -1.8545 -1.1938 24 1 8.1001 -0.6878 0.0011 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 0.2187 2.3169 -0.0003 29 1 0.2097 4.7223 -0.0021 30 1 2.4664 6.1681 0.8882 31 1 2.4676 6.1673 -0.8918 32 1 0.8157 7.4182 2.1348 33 1 -0.9040 9.2328 2.0414 34 1 -1.7951 9.8908 -0.1818 35 1 3.8133 4.6500 -0.0024 36 1 5.1613 2.6178 0.0092 37 1 6.8065 1.1217 1.6697 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167327772.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:58 Heat of formation + Delta-G solvation = 30.029428 kcal Electronic energy + Delta-G solvation = -21070.995726 eV Core-core repulsion = 17813.369126 eV Total energy + Delta-G solvation = -3257.626600 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.122 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.02856 -40.49463 -38.50696 -36.75890 -35.07754 -34.09051 -33.35461 -30.80113 -30.63203 -28.12553 -27.79194 -25.76594 -25.56916 -23.95112 -22.71848 -21.76112 -19.22604 -18.60639 -18.43594 -17.95581 -17.46888 -16.81531 -16.34115 -16.22152 -16.13548 -15.75878 -15.40912 -15.15584 -14.87391 -14.49875 -14.16699 -13.96503 -13.78976 -13.50208 -13.11816 -12.77466 -12.73051 -12.43653 -12.14416 -11.89927 -11.83508 -11.53358 -11.42833 -11.20579 -10.98968 -10.97343 -10.65799 -10.18348 -8.93661 -8.50086 -8.20286 -5.89750 -0.15415 -0.13962 1.10860 1.13286 1.42290 1.53787 1.59086 2.32462 2.40337 2.83082 2.87121 2.94893 3.08833 3.49617 3.69065 3.79576 3.84242 4.05270 4.24890 4.36208 4.47429 4.49582 4.50536 4.57993 4.70187 4.74524 4.84946 4.96603 5.11643 5.23965 5.27006 5.29530 5.45248 5.61839 5.88483 6.08068 6.26892 6.51180 6.76112 6.93489 7.02940 7.11000 7.36688 7.70085 8.55202 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.024774 B = 0.003548 C = 0.003227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.966756 B = 7889.662838 C = 8674.823356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.338 6.338 3 C 0.044 3.956 4 C -0.249 4.249 5 C 0.151 3.849 6 N -0.741 5.741 7 C 0.192 3.808 8 C 0.050 3.950 9 C -0.106 4.106 10 C -0.102 4.102 11 C 0.038 3.962 12 N -0.285 5.285 13 N -0.270 5.270 14 C -0.200 4.200 15 C -0.113 4.113 16 C 0.015 3.985 17 C -0.489 4.489 18 H 0.060 0.940 19 C 0.032 3.968 20 N -0.843 5.843 21 Si 0.972 3.028 22 H -0.268 1.268 23 H -0.266 1.266 24 H -0.266 1.266 25 H 0.110 0.890 26 H 0.050 0.950 27 H 0.050 0.950 28 H 0.123 0.877 29 H 0.393 0.607 30 H 0.086 0.914 31 H 0.059 0.941 32 H 0.175 0.825 33 H 0.197 0.803 34 H 0.208 0.792 35 H 0.113 0.887 36 H 0.108 0.892 37 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.439 13.739 3.465 18.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.253 6.253 3 C -0.001 4.001 4 C -0.272 4.272 5 C 0.051 3.949 6 N -0.376 5.376 7 C 0.066 3.934 8 C -0.096 4.096 9 C -0.135 4.135 10 C -0.130 4.130 11 C -0.127 4.127 12 N -0.125 5.125 13 N -0.112 5.112 14 C -0.223 4.223 15 C -0.134 4.134 16 C 0.012 3.988 17 C -0.520 4.520 18 H 0.078 0.922 19 C -0.179 4.179 20 N -0.473 5.473 21 Si 0.794 3.206 22 H -0.193 1.193 23 H -0.190 1.190 24 H -0.190 1.190 25 H 0.129 0.871 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.141 0.859 29 H 0.226 0.774 30 H 0.104 0.896 31 H 0.077 0.923 32 H 0.193 0.807 33 H 0.214 0.786 34 H 0.225 0.775 35 H 0.131 0.869 36 H 0.126 0.874 37 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -11.085 13.631 1.916 17.673 hybrid contribution 0.161 -0.459 1.305 1.393 sum -10.924 13.172 3.221 17.413 Atomic orbital electron populations 1.23064 0.78731 1.04097 1.00863 1.85940 1.21447 1.28011 1.89895 1.19155 0.92030 0.83461 1.05459 1.20281 0.98425 0.90883 1.17639 1.17075 0.90204 0.85516 1.02107 1.43718 1.06771 1.01206 1.85926 1.19861 0.91681 0.79373 1.02484 1.22863 0.97518 0.97615 0.91646 1.22707 0.96026 0.95022 0.99708 1.22956 0.94106 0.95039 1.00941 1.25028 0.98835 0.99044 0.89771 1.72990 1.06243 1.03612 1.29670 1.72928 1.04883 1.07117 1.26294 1.20173 0.91904 0.97903 1.12283 1.20632 0.99068 0.91018 1.02659 1.17274 0.88619 0.94553 0.98341 1.19285 0.98885 0.96488 1.37384 0.92198 1.26486 0.99800 0.99201 0.92432 1.69905 1.19860 1.33019 1.24478 0.85347 0.77427 0.78405 0.79380 1.19281 1.19001 1.19025 0.87128 0.93100 0.93112 0.85917 0.77351 0.89643 0.92252 0.80707 0.78608 0.77494 0.86893 0.87376 0.90842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.91 9.81 113.37 1.11 2.03 16 2 O -0.34 -16.17 9.79 -89.86 -0.88 -17.05 16 3 C 0.04 2.28 6.71 23.02 0.15 2.43 16 4 C -0.25 -10.95 8.86 22.46 0.20 -10.75 16 5 C 0.15 6.32 6.66 38.61 0.26 6.57 16 6 N -0.74 -24.22 5.69 -342.82 -1.95 -26.17 16 7 C 0.19 5.32 5.22 85.64 0.45 5.77 16 8 C 0.05 1.19 6.23 42.63 0.27 1.46 16 9 C -0.11 -1.68 9.86 22.51 0.22 -1.45 16 10 C -0.10 -1.10 10.21 22.51 0.23 -0.87 16 11 C 0.04 0.55 11.31 84.76 0.96 1.51 16 12 N -0.29 -7.17 11.50 -57.26 -0.66 -7.83 16 13 N -0.27 -7.80 11.43 -47.63 -0.54 -8.34 16 14 C -0.20 -9.17 9.22 22.16 0.20 -8.97 16 15 C -0.11 -6.08 8.62 22.44 0.19 -5.88 16 16 C 0.02 0.87 5.58 -21.18 -0.12 0.75 16 17 C -0.49 -28.52 8.69 23.33 0.20 -28.31 16 18 H 0.06 3.54 7.66 -2.91 -0.02 3.51 16 19 C 0.03 1.71 5.13 85.21 0.44 2.14 16 20 N -0.84 -46.23 10.98 21.82 0.24 -45.99 16 21 Si 0.97 41.50 29.59 68.60 2.03 43.53 16 22 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 23 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 24 H -0.27 -10.65 7.11 99.48 0.71 -9.95 16 25 H 0.11 2.97 8.14 -2.39 -0.02 2.95 16 26 H 0.05 1.56 7.66 -2.39 -0.02 1.55 16 27 H 0.05 1.56 7.66 -2.39 -0.02 1.54 16 28 H 0.12 4.60 6.29 -2.91 -0.02 4.58 16 29 H 0.39 11.80 8.46 -92.71 -0.78 11.01 16 30 H 0.09 2.14 7.84 -2.39 -0.02 2.12 16 31 H 0.06 1.82 7.92 -2.38 -0.02 1.81 16 32 H 0.18 1.93 8.06 -2.91 -0.02 1.91 16 33 H 0.20 0.31 8.06 -2.91 -0.02 0.29 16 34 H 0.21 1.28 8.06 -2.91 -0.02 1.26 16 35 H 0.11 4.55 6.67 -2.91 -0.02 4.53 16 36 H 0.11 6.06 6.19 -2.91 -0.02 6.05 16 37 H 0.28 14.01 8.30 -92.71 -0.77 13.24 16 Total: -1.00 -73.30 319.40 3.33 -69.98 By element: Atomic # 1 Polarization: 25.13 SS G_CDS: 0.33 Total: 25.46 kcal Atomic # 6 Polarization: -38.34 SS G_CDS: 4.77 Total: -33.57 kcal Atomic # 7 Polarization: -85.42 SS G_CDS: -2.92 Total: -88.34 kcal Atomic # 8 Polarization: -16.17 SS G_CDS: -0.88 Total: -17.05 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 2.03 Total: 43.53 kcal Total: -73.30 3.33 -69.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167327772.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.005 kcal (2) G-P(sol) polarization free energy of solvation -73.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds