Wall clock time and date at job start Tue Mar 31 2020 05:23:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35960 * 116.99954 * 2 1 4 4 C 1.39412 * 119.82125 * 0.27850 * 3 2 1 5 5 C 1.38103 * 120.56738 * 180.27924 * 4 3 2 6 6 C 1.38712 * 120.20053 * 359.44361 * 5 4 3 7 7 N 1.38858 * 120.18343 * 180.25568 * 6 5 4 8 8 C 1.46497 * 119.99668 * 0.02562 * 7 6 5 9 9 C 1.50702 * 109.47127 * 179.97438 * 8 7 6 10 10 C 1.38611 * 120.07377 * 94.99959 * 9 8 7 11 11 C 1.38881 * 117.96726 * 180.02562 * 10 9 8 12 12 C 1.38607 * 117.96850 * 359.97438 * 11 10 9 13 13 N 1.31929 * 119.84748 * 0.02562 * 12 11 10 14 14 N 1.28346 * 122.18552 * 359.70209 * 13 12 11 15 15 C 1.41546 * 119.64034 * 0.27339 * 6 5 4 16 16 C 1.41025 * 120.27893 * 180.02562 * 15 6 5 17 17 H 1.07997 * 120.00265 * 334.25832 * 16 15 6 18 18 C 1.39898 * 120.00001 * 154.25383 * 16 15 6 19 19 N 1.30894 * 119.99969 * 342.95098 * 18 16 15 20 20 Si 1.86799 * 120.00452 * 162.95590 * 18 16 15 21 21 H 1.48499 * 109.47441 * 94.63513 * 20 18 16 22 22 H 1.48493 * 109.47486 * 214.64129 * 20 18 16 23 23 H 1.48501 * 109.46791 * 334.63993 * 20 18 16 24 24 C 1.37847 * 119.81682 * 180.02562 * 3 2 1 25 25 H 1.09000 * 109.46829 * 299.99560 * 1 2 3 26 26 H 1.08996 * 109.47542 * 59.99444 * 1 2 3 27 27 H 1.09002 * 109.47541 * 180.02562 * 1 2 3 28 28 H 1.07998 * 119.72011 * 359.97438 * 4 3 2 29 29 H 1.07997 * 119.89967 * 179.72621 * 5 4 3 30 30 H 0.96996 * 120.00182 * 179.97438 * 7 6 5 31 31 H 1.09007 * 109.47343 * 300.00084 * 8 7 6 32 32 H 1.09007 * 109.47474 * 59.99781 * 8 7 6 33 33 H 1.07995 * 121.01631 * 359.97438 * 10 9 8 34 34 H 1.07999 * 121.01662 * 180.02562 * 11 10 9 35 35 H 1.08002 * 120.07373 * 180.02562 * 12 11 10 36 36 H 0.97005 * 120.00425 * 179.97438 * 19 18 16 37 37 H 1.07996 * 120.10868 * 0.02937 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2833 2.3782 0.0059 5 6 1.8941 3.6168 0.0002 6 6 3.2780 3.7123 0.0001 7 7 3.8918 4.9579 -0.0003 8 6 3.0775 6.1757 0.0000 9 6 3.9794 7.3830 0.0001 10 6 4.3113 8.0023 -1.1948 11 6 5.1459 9.1112 -1.1439 12 6 5.5948 9.5303 0.0987 13 7 5.2261 8.8779 1.1845 14 7 4.4507 7.8562 1.1379 15 6 4.0610 2.5332 0.0001 16 6 5.4689 2.6147 0.0006 17 1 5.9596 3.4870 -0.4052 18 6 6.2301 1.5655 0.5269 19 7 5.6688 0.6772 1.3074 20 14 8.0474 1.4322 0.1159 21 1 8.8458 2.0862 1.1837 22 1 8.4293 0.0005 0.0188 23 1 8.3120 2.1041 -1.1817 24 6 3.4230 1.2792 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 0.2053 2.3131 0.0100 29 1 1.2926 4.5138 0.0003 30 1 4.8596 5.0216 0.0001 31 1 2.4480 6.1921 -0.8898 32 1 2.4487 6.1923 0.8902 33 1 3.9331 7.6332 -2.1366 34 1 5.4356 9.6315 -2.0448 35 1 6.2450 10.3891 0.1778 36 1 6.1965 -0.0506 1.6721 37 1 4.0101 0.3727 -0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167327885.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:01 Heat of formation + Delta-G solvation = 47.971633 kcal Electronic energy + Delta-G solvation = -21334.360092 eV Core-core repulsion = 18077.511524 eV Total energy + Delta-G solvation = -3256.848568 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.122 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.03440 -38.66915 -37.05051 -34.86650 -33.40229 -33.17213 -32.05160 -29.70661 -28.39665 -26.69927 -25.38791 -24.84988 -24.64027 -22.86585 -20.77953 -19.95575 -17.64606 -17.47216 -17.06835 -16.51616 -15.91128 -15.51337 -15.03064 -14.74767 -14.66958 -14.51894 -13.97373 -13.55401 -13.40873 -13.14219 -12.84616 -12.27185 -12.12485 -11.68704 -11.46180 -11.30919 -11.11303 -10.98258 -10.85331 -10.52841 -10.33960 -10.21855 -10.05788 -9.91002 -9.68184 -9.34382 -9.08859 -8.39946 -7.39478 -6.71570 -6.00470 -4.18479 0.73170 0.80530 2.81130 3.10844 3.13360 3.18308 3.25281 3.45890 3.95726 3.97808 4.36837 4.45855 4.49244 4.60267 4.67231 4.75280 4.87814 5.15603 5.50420 5.65422 5.72054 5.77017 5.84407 5.85391 5.99154 6.11283 6.14002 6.20550 6.39454 6.87872 6.98361 7.18020 7.44764 7.54108 7.63715 7.90669 8.06995 8.25123 8.58657 8.69473 8.76865 8.86986 8.95914 9.11441 10.27877 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.012434 B = 0.005391 C = 0.003946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2251.392393 B = 5192.391036 C = 7093.254970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.331 6.331 3 C 0.095 3.905 4 C -0.278 4.278 5 C -0.146 4.146 6 C 0.093 3.907 7 N -0.742 5.742 8 C 0.191 3.809 9 C 0.066 3.934 10 C -0.103 4.103 11 C -0.123 4.123 12 C 0.032 3.968 13 N -0.245 5.245 14 N -0.225 5.225 15 C 0.101 3.899 16 C -0.461 4.461 17 H 0.073 0.927 18 C 0.078 3.922 19 N -0.789 5.789 20 Si 0.902 3.098 21 H -0.272 1.272 22 H -0.275 1.275 23 H -0.263 1.263 24 C -0.172 4.172 25 H 0.042 0.958 26 H 0.042 0.958 27 H 0.080 0.920 28 H 0.093 0.907 29 H 0.091 0.909 30 H 0.396 0.604 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.152 0.848 34 H 0.149 0.851 35 H 0.170 0.830 36 H 0.280 0.720 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.573 10.926 -5.918 12.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.246 6.246 3 C 0.051 3.949 4 C -0.299 4.299 5 C -0.170 4.170 6 C -0.006 4.006 7 N -0.379 5.379 8 C 0.064 3.936 9 C -0.079 4.079 10 C -0.133 4.133 11 C -0.152 4.152 12 C -0.132 4.132 13 N -0.086 5.086 14 N -0.068 5.068 15 C 0.097 3.903 16 C -0.492 4.492 17 H 0.091 0.909 18 C -0.140 4.140 19 N -0.414 5.414 20 Si 0.727 3.273 21 H -0.198 1.198 22 H -0.200 1.200 23 H -0.187 1.187 24 C -0.193 4.193 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.098 0.902 28 H 0.111 0.889 29 H 0.109 0.891 30 H 0.231 0.769 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.170 0.830 34 H 0.167 0.833 35 H 0.187 0.813 36 H 0.091 0.909 37 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -2.503 10.504 -4.095 11.549 hybrid contribution 0.879 0.337 -1.681 1.926 sum -1.624 10.841 -5.776 12.391 Atomic orbital electron populations 1.22700 0.81221 1.01556 1.00280 1.85999 1.19073 1.29163 1.90367 1.18812 0.92386 0.82394 1.01326 1.20165 0.96964 0.92108 1.20629 1.19754 0.92091 0.95779 1.09365 1.17771 0.91029 0.84630 1.07122 1.43686 1.07189 1.00673 1.86389 1.19789 0.91299 0.80640 1.01871 1.23104 0.96736 0.97545 0.90497 1.22395 0.96039 0.94760 1.00104 1.22424 0.96385 0.96552 0.99803 1.24336 0.98479 1.00188 0.90170 1.73095 1.06262 1.01867 1.27334 1.73062 1.04138 1.04662 1.24905 1.16925 0.92705 0.88479 0.92215 1.19092 0.90828 1.03201 1.36036 0.90940 1.25789 1.00633 0.94798 0.92790 1.69862 1.38194 1.11542 1.21796 0.86402 0.82619 0.78440 0.79857 1.19757 1.20022 1.18660 1.20283 0.89267 0.98494 1.11249 0.93892 0.93970 0.90196 0.88872 0.89081 0.76901 0.91645 0.91317 0.83012 0.83292 0.81279 0.90949 0.85657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.64 9.81 101.05 0.99 1.63 16 2 O -0.33 -7.51 10.49 -19.62 -0.21 -7.72 16 3 C 0.09 2.35 6.67 -39.29 -0.26 2.09 16 4 C -0.28 -6.29 9.03 -39.19 -0.35 -6.64 16 5 C -0.15 -3.24 9.28 -39.46 -0.37 -3.61 16 6 C 0.09 2.17 6.68 -83.24 -0.56 1.62 16 7 N -0.74 -14.92 5.63 -59.35 -0.33 -15.26 16 8 C 0.19 3.06 5.23 -5.19 -0.03 3.03 16 9 C 0.07 0.97 6.23 -82.41 -0.51 0.46 16 10 C -0.10 -1.15 9.86 -39.21 -0.39 -1.54 16 11 C -0.12 -1.13 10.21 -39.21 -0.40 -1.53 16 12 C 0.03 0.35 11.31 -17.37 -0.20 0.15 16 13 N -0.24 -3.71 11.50 30.55 0.35 -3.36 16 14 N -0.22 -3.79 11.43 33.60 0.38 -3.40 16 15 C 0.10 2.67 5.57 -106.65 -0.59 2.07 16 16 C -0.46 -11.99 8.49 -37.91 -0.32 -12.31 16 17 H 0.07 1.79 6.69 -52.49 -0.35 1.44 16 18 C 0.08 1.97 5.14 -17.33 -0.09 1.88 16 19 N -0.79 -20.91 10.99 55.55 0.61 -20.30 16 20 Si 0.90 18.95 29.59 -169.99 -5.03 13.92 16 21 H -0.27 -5.70 7.11 56.52 0.40 -5.29 16 22 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 23 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 24 C -0.17 -4.62 8.60 -38.79 -0.33 -4.95 16 25 H 0.04 0.69 7.64 -51.93 -0.40 0.29 16 26 H 0.04 0.65 7.66 -51.93 -0.40 0.26 16 27 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.09 1.86 6.26 -52.49 -0.33 1.53 16 29 H 0.09 1.75 6.70 -52.49 -0.35 1.40 16 30 H 0.40 8.21 6.68 -40.82 -0.27 7.94 16 31 H 0.07 0.92 7.85 -51.93 -0.41 0.51 16 32 H 0.07 1.15 7.94 -51.93 -0.41 0.74 16 33 H 0.15 1.33 8.06 -52.49 -0.42 0.91 16 34 H 0.15 0.80 8.06 -52.49 -0.42 0.38 16 35 H 0.17 1.16 8.06 -52.49 -0.42 0.74 16 36 H 0.28 6.80 8.30 -40.82 -0.34 6.46 16 37 H 0.13 3.56 6.22 -52.49 -0.33 3.23 16 LS Contribution 317.34 15.07 4.78 4.78 Total: -1.00 -31.18 317.34 -6.92 -38.10 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: -4.07 Total: 10.87 kcal Atomic # 6 Polarization: -14.23 SS G_CDS: -3.41 Total: -17.65 kcal Atomic # 7 Polarization: -43.32 SS G_CDS: 1.01 Total: -42.31 kcal Atomic # 8 Polarization: -7.51 SS G_CDS: -0.21 Total: -7.72 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -5.03 Total: 13.92 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -31.18 -6.92 -38.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167327885.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.071 kcal (2) G-P(sol) polarization free energy of solvation -31.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds