Wall clock time and date at job start Tue Mar 31 2020 05:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35960 * 116.99954 * 2 1 4 4 C 1.39412 * 119.82125 * 0.27850 * 3 2 1 5 5 C 1.38103 * 120.56738 * 180.27924 * 4 3 2 6 6 C 1.38712 * 120.20053 * 359.44361 * 5 4 3 7 7 N 1.38858 * 120.18343 * 180.25568 * 6 5 4 8 8 C 1.46497 * 119.99668 * 0.02562 * 7 6 5 9 9 C 1.50702 * 109.47127 * 179.97438 * 8 7 6 10 10 C 1.38611 * 120.07377 * 94.99959 * 9 8 7 11 11 C 1.38881 * 117.96726 * 180.02562 * 10 9 8 12 12 C 1.38607 * 117.96850 * 359.97438 * 11 10 9 13 13 N 1.31929 * 119.84748 * 0.02562 * 12 11 10 14 14 N 1.28346 * 122.18552 * 359.70209 * 13 12 11 15 15 C 1.41546 * 119.64034 * 0.27339 * 6 5 4 16 16 C 1.41025 * 120.27893 * 180.02562 * 15 6 5 17 17 H 1.07997 * 120.00265 * 334.25832 * 16 15 6 18 18 C 1.39898 * 120.00001 * 154.25383 * 16 15 6 19 19 N 1.30894 * 119.99969 * 342.95098 * 18 16 15 20 20 Si 1.86799 * 120.00452 * 162.95590 * 18 16 15 21 21 H 1.48499 * 109.47441 * 94.63513 * 20 18 16 22 22 H 1.48493 * 109.47486 * 214.64129 * 20 18 16 23 23 H 1.48501 * 109.46791 * 334.63993 * 20 18 16 24 24 C 1.37847 * 119.81682 * 180.02562 * 3 2 1 25 25 H 1.09000 * 109.46829 * 299.99560 * 1 2 3 26 26 H 1.08996 * 109.47542 * 59.99444 * 1 2 3 27 27 H 1.09002 * 109.47541 * 180.02562 * 1 2 3 28 28 H 1.07998 * 119.72011 * 359.97438 * 4 3 2 29 29 H 1.07997 * 119.89967 * 179.72621 * 5 4 3 30 30 H 0.96996 * 120.00182 * 179.97438 * 7 6 5 31 31 H 1.09007 * 109.47343 * 300.00084 * 8 7 6 32 32 H 1.09007 * 109.47474 * 59.99781 * 8 7 6 33 33 H 1.07995 * 121.01631 * 359.97438 * 10 9 8 34 34 H 1.07999 * 121.01662 * 180.02562 * 11 10 9 35 35 H 1.08002 * 120.07373 * 180.02562 * 12 11 10 36 36 H 0.97005 * 120.00425 * 179.97438 * 19 18 16 37 37 H 1.07996 * 120.10868 * 0.02937 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2833 2.3782 0.0059 5 6 1.8941 3.6168 0.0002 6 6 3.2780 3.7123 0.0001 7 7 3.8918 4.9579 -0.0003 8 6 3.0775 6.1757 0.0000 9 6 3.9794 7.3830 0.0001 10 6 4.3113 8.0023 -1.1948 11 6 5.1459 9.1112 -1.1439 12 6 5.5948 9.5303 0.0987 13 7 5.2261 8.8779 1.1845 14 7 4.4507 7.8562 1.1379 15 6 4.0610 2.5332 0.0001 16 6 5.4689 2.6147 0.0006 17 1 5.9596 3.4870 -0.4052 18 6 6.2301 1.5655 0.5269 19 7 5.6688 0.6772 1.3074 20 14 8.0474 1.4322 0.1159 21 1 8.8458 2.0862 1.1837 22 1 8.4293 0.0005 0.0188 23 1 8.3120 2.1041 -1.1817 24 6 3.4230 1.2792 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 0.2053 2.3131 0.0100 29 1 1.2926 4.5138 0.0003 30 1 4.8596 5.0216 0.0001 31 1 2.4480 6.1921 -0.8898 32 1 2.4487 6.1923 0.8902 33 1 3.9331 7.6332 -2.1366 34 1 5.4356 9.6315 -2.0448 35 1 6.2450 10.3891 0.1778 36 1 6.1965 -0.0506 1.6721 37 1 4.0101 0.3727 -0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167327885.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:00 Heat of formation + Delta-G solvation = 26.884146 kcal Electronic energy + Delta-G solvation = -21335.274514 eV Core-core repulsion = 18077.511524 eV Total energy + Delta-G solvation = -3257.762990 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.122 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.99289 -40.41633 -38.70087 -36.36214 -35.15119 -34.07548 -33.35145 -31.56109 -29.94772 -28.09187 -27.00996 -26.53077 -25.55220 -24.05259 -22.50442 -21.69144 -19.44405 -18.50119 -18.22079 -17.79257 -17.56412 -16.99808 -16.53487 -16.23697 -16.07797 -15.84269 -15.31283 -14.91720 -14.81526 -14.44161 -14.07489 -13.81710 -13.70599 -13.41385 -13.15165 -12.93293 -12.77313 -12.59945 -12.24505 -11.90399 -11.84474 -11.73429 -11.22056 -11.17378 -10.96490 -10.92700 -10.62821 -10.04173 -9.30731 -8.59894 -7.77724 -6.11292 -0.12125 -0.10000 0.99960 1.33248 1.36935 1.48594 1.52835 2.21741 2.46761 2.78642 2.92142 2.95543 3.21348 3.53317 3.71946 3.79232 3.87006 4.08256 4.27891 4.39052 4.52846 4.53789 4.56483 4.60446 4.69490 4.78831 4.86358 5.09026 5.13770 5.15523 5.29701 5.31544 5.59317 5.73016 5.82895 6.02123 6.22044 6.36863 6.78453 6.95690 7.04447 7.17017 7.30577 7.73570 8.42283 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.012434 B = 0.005391 C = 0.003946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2251.392393 B = 5192.391036 C = 7093.254970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.356 6.356 3 C 0.080 3.920 4 C -0.269 4.269 5 C -0.151 4.151 6 C 0.092 3.908 7 N -0.741 5.741 8 C 0.193 3.807 9 C 0.049 3.951 10 C -0.105 4.105 11 C -0.103 4.103 12 C 0.035 3.965 13 N -0.287 5.287 14 N -0.274 5.274 15 C 0.068 3.932 16 C -0.487 4.487 17 H 0.077 0.923 18 C 0.032 3.968 19 N -0.829 5.829 20 Si 0.974 3.026 21 H -0.268 1.268 22 H -0.270 1.270 23 H -0.255 1.255 24 C -0.202 4.202 25 H 0.050 0.950 26 H 0.056 0.944 27 H 0.112 0.888 28 H 0.125 0.875 29 H 0.124 0.876 30 H 0.389 0.611 31 H 0.092 0.908 32 H 0.057 0.943 33 H 0.178 0.822 34 H 0.198 0.802 35 H 0.208 0.792 36 H 0.283 0.717 37 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.880 13.172 -7.766 15.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.271 6.271 3 C 0.036 3.964 4 C -0.290 4.290 5 C -0.175 4.175 6 C -0.008 4.008 7 N -0.376 5.376 8 C 0.067 3.933 9 C -0.097 4.097 10 C -0.134 4.134 11 C -0.131 4.131 12 C -0.129 4.129 13 N -0.127 5.127 14 N -0.116 5.116 15 C 0.063 3.937 16 C -0.517 4.517 17 H 0.095 0.905 18 C -0.181 4.181 19 N -0.456 5.456 20 Si 0.795 3.205 21 H -0.193 1.193 22 H -0.195 1.195 23 H -0.179 1.179 24 C -0.224 4.224 25 H 0.069 0.931 26 H 0.075 0.925 27 H 0.130 0.870 28 H 0.143 0.857 29 H 0.142 0.858 30 H 0.223 0.777 31 H 0.110 0.890 32 H 0.075 0.925 33 H 0.196 0.804 34 H 0.215 0.785 35 H 0.225 0.775 36 H 0.093 0.907 37 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -2.837 12.778 -5.933 14.371 hybrid contribution 0.841 -0.249 -1.145 1.442 sum -1.996 12.529 -7.077 14.528 Atomic orbital electron populations 1.23074 0.78065 1.04179 1.01268 1.85953 1.22374 1.28520 1.90290 1.18908 0.92065 0.83895 1.01566 1.20536 0.98469 0.91444 1.18528 1.20124 0.91837 0.96984 1.08508 1.17925 0.91682 0.85221 1.05985 1.43786 1.07239 1.01001 1.85608 1.19903 0.91336 0.79701 1.02386 1.22953 0.97495 0.97595 0.91658 1.22715 0.96031 0.95031 0.99664 1.22960 0.94076 0.95219 1.00872 1.25031 0.97761 1.00266 0.89871 1.72971 1.07393 1.02513 1.29853 1.72921 1.05834 1.06213 1.26624 1.17260 0.93501 0.89486 0.93423 1.19344 0.91343 1.04033 1.37002 0.90539 1.26655 1.05127 0.94169 0.92188 1.69959 1.40028 1.12446 1.23171 0.85318 0.76869 0.78544 0.79727 1.19324 1.19481 1.17883 1.20227 0.90537 0.97921 1.13694 0.93128 0.92504 0.86992 0.85746 0.85778 0.77664 0.89013 0.92477 0.80424 0.78457 0.77490 0.90678 0.88563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.91 9.81 113.37 1.11 2.02 16 2 O -0.36 -16.26 10.49 -93.11 -0.98 -17.24 16 3 C 0.08 4.04 6.67 22.46 0.15 4.19 16 4 C -0.27 -11.88 9.03 22.52 0.20 -11.68 16 5 C -0.15 -6.51 9.28 22.35 0.21 -6.30 16 6 C 0.09 4.34 6.68 38.96 0.26 4.60 16 7 N -0.74 -29.87 5.63 -341.67 -1.92 -31.79 16 8 C 0.19 5.99 5.23 85.63 0.45 6.44 16 9 C 0.05 1.39 6.23 42.63 0.27 1.65 16 10 C -0.11 -2.04 9.86 22.51 0.22 -1.81 16 11 C -0.10 -1.45 10.21 22.51 0.23 -1.22 16 12 C 0.04 0.66 11.31 84.77 0.96 1.61 16 13 N -0.29 -8.51 11.50 -57.26 -0.66 -9.17 16 14 N -0.27 -9.26 11.43 -47.62 -0.54 -9.80 16 15 C 0.07 3.71 5.57 -21.18 -0.12 3.59 16 16 C -0.49 -26.31 8.49 23.36 0.20 -26.12 16 17 H 0.08 3.90 6.69 -2.91 -0.02 3.88 16 18 C 0.03 1.71 5.14 85.23 0.44 2.14 16 19 N -0.83 -46.29 10.99 21.82 0.24 -46.05 16 20 Si 0.97 39.99 29.59 68.60 2.03 42.02 16 21 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 22 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 23 H -0.26 -10.04 7.11 99.48 0.71 -9.34 16 24 C -0.20 -11.42 8.60 22.78 0.20 -11.22 16 25 H 0.05 1.51 7.64 -2.39 -0.02 1.49 16 26 H 0.06 1.62 7.66 -2.39 -0.02 1.60 16 27 H 0.11 2.77 8.14 -2.39 -0.02 2.75 16 28 H 0.12 4.61 6.26 -2.91 -0.02 4.59 16 29 H 0.12 4.45 6.70 -2.91 -0.02 4.43 16 30 H 0.39 16.48 6.68 -92.71 -0.62 15.86 16 31 H 0.09 2.35 7.85 -2.38 -0.02 2.33 16 32 H 0.06 1.89 7.94 -2.38 -0.02 1.88 16 33 H 0.18 2.40 8.06 -2.91 -0.02 2.38 16 34 H 0.20 0.87 8.06 -2.91 -0.02 0.84 16 35 H 0.21 2.01 8.06 -2.91 -0.02 1.98 16 36 H 0.28 14.47 8.30 -92.70 -0.77 13.70 16 37 H 0.10 5.87 6.22 -2.91 -0.02 5.85 16 Total: -1.00 -73.37 317.34 3.43 -69.94 By element: Atomic # 1 Polarization: 33.70 SS G_CDS: 0.49 Total: 34.19 kcal Atomic # 6 Polarization: -36.87 SS G_CDS: 4.77 Total: -32.10 kcal Atomic # 7 Polarization: -93.92 SS G_CDS: -2.89 Total: -96.81 kcal Atomic # 8 Polarization: -16.26 SS G_CDS: -0.98 Total: -17.24 kcal Atomic # 14 Polarization: 39.99 SS G_CDS: 2.03 Total: 42.02 kcal Total: -73.37 3.43 -69.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167327885.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.822 kcal (2) G-P(sol) polarization free energy of solvation -73.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds