Wall clock time and date at job start Tue Mar 31 2020 05:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31973 * 119.57284 * 2 1 4 4 C 1.32398 * 121.62050 * 180.02562 * 3 2 1 5 5 N 1.39009 * 119.70098 * 179.97438 * 4 3 2 6 6 C 1.39129 * 120.59118 * 359.97438 * 4 3 2 7 7 C 1.38301 * 119.09626 * 359.75669 * 6 4 3 8 8 C 1.38028 * 119.57200 * 180.02562 * 2 1 3 9 9 C 1.50704 * 120.33126 * 359.96104 * 8 2 1 10 10 N 1.46494 * 109.46947 * 79.99610 * 9 8 2 11 11 C 1.37948 * 119.99785 * 179.97438 * 10 9 8 12 12 N 1.32615 * 120.23427 * 0.02562 * 11 10 9 13 13 C 1.32238 * 120.08776 * 179.97438 * 12 11 10 14 14 C 1.38965 * 120.56812 * 359.97438 * 13 12 11 15 15 N 1.31723 * 120.47614 * 0.02562 * 14 13 12 16 16 C 1.33908 * 119.89249 * 0.02562 * 15 14 13 17 17 C 1.40817 * 120.27669 * 179.97438 * 16 15 14 18 18 H 1.08000 * 120.00358 * 179.97438 * 17 16 15 19 19 C 1.40118 * 120.00039 * 359.97438 * 17 16 15 20 20 N 1.30730 * 120.00019 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 120.00081 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47205 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47373 * 120.00072 * 21 19 17 24 24 H 1.48499 * 109.46873 * 239.99865 * 21 19 17 25 25 H 1.09000 * 109.46645 * 269.98491 * 1 2 3 26 26 H 1.08999 * 109.46940 * 29.98038 * 1 2 3 27 27 H 1.08996 * 109.46871 * 149.98404 * 1 2 3 28 28 H 0.97000 * 119.99841 * 359.97438 * 5 4 3 29 29 H 0.97001 * 119.99383 * 180.02562 * 5 4 3 30 30 H 1.08001 * 120.45187 * 179.97438 * 6 4 3 31 31 H 1.08002 * 120.74691 * 180.24870 * 7 6 4 32 32 H 1.08999 * 109.47061 * 319.99302 * 9 8 2 33 33 H 1.09004 * 109.46622 * 199.99550 * 9 8 2 34 34 H 0.96996 * 120.00544 * 359.97438 * 10 9 8 35 35 H 1.07998 * 119.72176 * 180.02562 * 13 12 11 36 36 H 1.07998 * 119.76400 * 179.74257 * 14 13 12 37 37 H 0.97003 * 120.00336 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1584 1.1478 0.0000 4 6 3.4815 1.1951 -0.0005 5 7 4.1267 2.4264 -0.0010 6 6 4.2319 0.0235 -0.0005 7 6 3.5770 -1.1946 0.0051 8 6 2.1882 -1.2005 -0.0005 9 6 1.4325 -2.5043 -0.0002 10 7 0.9793 -2.8063 -1.3602 11 6 0.2616 -3.9580 -1.6082 12 7 -0.0211 -4.7948 -0.6189 13 6 -0.7097 -5.8977 -0.8599 14 6 -1.1444 -6.1926 -2.1464 15 7 -0.8762 -5.3772 -3.1456 16 6 -0.1793 -4.2556 -2.9230 17 6 0.1125 -3.3784 -3.9852 18 1 0.6745 -2.4748 -3.8006 19 6 -0.3263 -3.6779 -5.2818 20 7 -1.0062 -4.7719 -5.5054 21 14 0.0613 -2.5146 -6.6911 22 1 0.8376 -1.3572 -6.1783 23 1 0.8595 -3.2304 -7.7186 24 1 -1.2055 -2.0312 -7.2966 25 1 -0.3632 -0.0003 1.0277 26 1 -0.3633 0.8902 -0.5135 27 1 -0.3633 -0.8898 -0.5141 28 1 3.6076 3.2459 -0.0014 29 1 5.0959 2.4660 -0.0018 30 1 5.3111 0.0647 -0.0013 31 1 4.1330 -2.1204 0.0093 32 1 0.5697 -2.4240 0.6609 33 1 2.0861 -3.3030 0.3507 34 1 1.1837 -2.1965 -2.0862 35 1 -0.9369 -6.5748 -0.0498 36 1 -1.7023 -7.0990 -2.3293 37 1 -1.3097 -4.9794 -6.4031 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167782755.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:41 Heat of formation + Delta-G solvation = 84.755577 kcal Electronic energy + Delta-G solvation = -21576.186145 eV Core-core repulsion = 18353.225400 eV Total energy + Delta-G solvation = -3222.960745 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.31323 -38.88709 -36.04324 -34.29276 -33.93226 -32.70525 -31.56202 -30.93626 -28.96159 -27.35701 -25.87339 -24.79083 -22.49871 -22.06396 -21.43407 -20.88478 -17.58833 -17.51063 -16.92181 -16.79537 -15.86741 -15.34723 -15.06286 -14.53020 -14.46588 -14.04732 -13.70450 -13.52786 -13.16400 -12.86892 -12.75724 -12.63544 -12.29896 -12.04441 -11.83287 -11.41278 -11.32840 -11.22790 -10.60361 -10.49202 -10.15664 -9.82861 -9.55235 -9.44842 -9.33167 -9.26724 -8.52979 -7.78977 -7.29116 -6.75064 -6.38195 -4.38829 1.33121 1.51382 2.68407 3.07385 3.09460 3.10721 3.28588 3.44385 3.88334 3.91329 4.57185 4.62744 4.76907 4.93573 5.13086 5.17582 5.40176 5.62887 5.81037 5.85675 5.89485 6.03335 6.04632 6.16735 6.21050 6.24469 6.30814 6.51150 6.61095 6.71122 6.79333 7.04140 7.10821 7.22810 7.38951 7.69892 8.01589 8.15934 8.28877 8.44202 8.66311 8.91660 9.50331 10.03829 10.26974 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.015019 B = 0.005165 C = 0.004169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.808243 B = 5419.669977 C = 6715.147522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.196 3.804 3 N -0.548 5.548 4 C 0.403 3.597 5 N -0.856 5.856 6 C -0.250 4.250 7 C -0.014 4.014 8 C -0.205 4.205 9 C 0.196 3.804 10 N -0.720 5.720 11 C 0.263 3.737 12 N -0.500 5.500 13 C -0.084 4.084 14 C 0.028 3.972 15 N -0.449 5.449 16 C 0.195 3.805 17 C -0.422 4.422 18 H 0.082 0.918 19 C 0.069 3.931 20 N -0.714 5.714 21 Si 0.904 3.096 22 H -0.260 1.260 23 H -0.273 1.273 24 H -0.273 1.273 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.091 0.909 28 H 0.401 0.599 29 H 0.405 0.595 30 H 0.127 0.873 31 H 0.134 0.866 32 H 0.060 0.940 33 H 0.055 0.945 34 H 0.403 0.597 35 H 0.122 0.878 36 H 0.123 0.877 37 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.877 10.172 7.062 14.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.058 3.942 3 N -0.267 5.267 4 C 0.166 3.834 5 N -0.400 5.400 6 C -0.275 4.275 7 C -0.040 4.040 8 C -0.210 4.210 9 C 0.071 3.929 10 N -0.362 5.362 11 C 0.016 3.984 12 N -0.222 5.222 13 C -0.238 4.238 14 C -0.135 4.135 15 N -0.167 5.167 16 C 0.061 3.939 17 C -0.456 4.456 18 H 0.100 0.900 19 C -0.156 4.156 20 N -0.336 5.336 21 Si 0.729 3.271 22 H -0.184 1.184 23 H -0.198 1.198 24 H -0.198 1.198 25 H 0.095 0.905 26 H 0.093 0.907 27 H 0.109 0.891 28 H 0.230 0.770 29 H 0.235 0.765 30 H 0.145 0.855 31 H 0.152 0.848 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.240 0.760 35 H 0.139 0.861 36 H 0.141 0.859 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 7.232 10.597 7.113 14.669 hybrid contribution 1.012 0.194 -0.857 1.340 sum 8.245 10.791 6.257 14.952 Atomic orbital electron populations 1.20872 0.88673 1.04400 1.03066 1.20828 0.96447 0.86674 0.90242 1.66998 1.07450 1.30250 1.21977 1.18312 0.88587 0.86338 0.90198 1.42159 1.08939 1.04804 1.84102 1.21246 1.00306 0.91953 1.13956 1.21273 0.93603 0.97619 0.91528 1.20626 0.94288 0.96379 1.09713 1.19605 0.96541 0.90648 0.86119 1.43770 1.61535 1.23018 1.07836 1.19306 0.98176 0.89633 0.91277 1.67303 1.16490 1.04643 1.33743 1.22250 1.07475 0.97440 0.96670 1.23141 1.00139 0.99439 0.90735 1.69493 1.14708 1.02957 1.29538 1.19034 0.92777 0.92418 0.89720 1.19261 1.29680 1.05307 0.91385 0.89994 1.25992 0.94085 0.95470 1.00056 1.70106 1.21747 1.19995 1.21746 0.86313 0.79152 0.80891 0.80784 1.18401 1.19828 1.19783 0.90475 0.90744 0.89056 0.76992 0.76526 0.85520 0.84841 0.92234 0.92664 0.76023 0.86059 0.85943 0.91559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.59 9.42 36.01 0.34 -1.25 16 2 C 0.20 2.98 6.78 -82.61 -0.56 2.42 16 3 N -0.55 -8.17 10.31 -8.67 -0.09 -8.26 16 4 C 0.40 5.17 7.75 -155.02 -1.20 3.97 16 5 N -0.86 -7.62 9.07 31.13 0.28 -7.33 16 6 C -0.25 -3.01 9.94 -39.23 -0.39 -3.40 16 7 C -0.01 -0.19 9.81 -39.32 -0.39 -0.57 16 8 C -0.21 -3.10 5.27 -104.46 -0.55 -3.65 16 9 C 0.20 3.36 4.96 -5.19 -0.03 3.33 16 10 N -0.72 -14.52 4.92 -61.07 -0.30 -14.82 16 11 C 0.26 6.37 7.51 -154.82 -1.16 5.21 16 12 N -0.50 -12.08 9.71 -11.67 -0.11 -12.19 16 13 C -0.08 -1.97 11.22 -17.11 -0.19 -2.17 16 14 C 0.03 0.70 11.21 -17.33 -0.19 0.50 16 15 N -0.45 -12.41 8.03 -10.79 -0.09 -12.50 16 16 C 0.19 5.21 6.56 -84.61 -0.56 4.66 16 17 C -0.42 -10.81 8.89 -37.90 -0.34 -11.14 16 18 H 0.08 1.93 6.12 -52.49 -0.32 1.61 16 19 C 0.07 1.73 5.50 -17.32 -0.10 1.63 16 20 N -0.71 -18.76 11.48 55.56 0.64 -18.13 16 21 Si 0.90 18.26 29.56 -169.99 -5.03 13.23 16 22 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 23 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 24 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 25 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 26 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 27 H 0.09 1.44 6.31 -51.93 -0.33 1.11 16 28 H 0.40 3.23 8.95 -40.82 -0.37 2.86 16 29 H 0.41 2.44 8.82 -40.82 -0.36 2.08 16 30 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 31 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 32 H 0.06 1.04 7.28 -51.93 -0.38 0.66 16 33 H 0.06 0.97 8.03 -51.93 -0.42 0.55 16 34 H 0.40 8.02 6.45 -40.82 -0.26 7.76 16 35 H 0.12 2.46 8.06 -52.49 -0.42 2.04 16 36 H 0.12 2.66 8.06 -52.49 -0.42 2.23 16 37 H 0.27 6.50 8.29 -40.82 -0.34 6.16 16 LS Contribution 317.99 15.07 4.79 4.79 Total: -1.00 -31.11 317.99 -9.32 -40.43 By element: Atomic # 1 Polarization: 19.33 SS G_CDS: -4.10 Total: 15.23 kcal Atomic # 6 Polarization: 4.86 SS G_CDS: -5.31 Total: -0.45 kcal Atomic # 7 Polarization: -73.56 SS G_CDS: 0.33 Total: -73.23 kcal Atomic # 14 Polarization: 18.26 SS G_CDS: -5.03 Total: 13.23 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -31.11 -9.32 -40.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167782755.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.184 kcal (2) G-P(sol) polarization free energy of solvation -31.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds