Wall clock time and date at job start Tue Mar 31 2020 05:37:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31972 * 119.57429 * 2 1 4 4 C 1.32398 * 121.62671 * 180.02562 * 3 2 1 5 5 N 1.39000 * 119.70387 * 179.97438 * 4 3 2 6 6 C 1.39130 * 120.58775 * 359.97438 * 4 3 2 7 7 C 1.38306 * 119.09744 * 359.75292 * 6 4 3 8 8 C 1.38023 * 119.57117 * 180.02562 * 2 1 3 9 9 C 1.50698 * 120.33942 * 359.96147 * 8 2 1 10 10 N 1.46497 * 109.47402 * 79.99240 * 9 8 2 11 11 C 1.38802 * 120.00292 * 180.02562 * 10 9 8 12 12 C 1.40082 * 120.75784 * 180.02562 * 11 10 9 13 13 N 1.31661 * 119.13689 * 180.02562 * 12 11 10 14 14 C 1.33599 * 120.79121 * 359.97438 * 13 12 11 15 15 C 1.41148 * 119.17061 * 179.97438 * 14 13 12 16 16 H 1.07997 * 120.00381 * 6.19786 * 15 14 13 17 17 C 1.40047 * 119.99795 * 186.19284 * 15 14 13 18 18 N 1.30724 * 120.00471 * 353.22527 * 17 15 14 19 19 Si 1.86809 * 119.99788 * 173.50203 * 17 15 14 20 20 H 1.48490 * 109.47206 * 94.98563 * 19 17 15 21 21 H 1.48496 * 109.46679 * 214.98732 * 19 17 15 22 22 H 1.48497 * 109.46790 * 334.98401 * 19 17 15 23 23 N 1.33598 * 121.65887 * 0.27811 * 14 13 12 24 24 C 1.31663 * 120.78978 * 359.43884 * 23 14 13 25 25 H 1.09003 * 109.47057 * 269.98124 * 1 2 3 26 26 H 1.09002 * 109.47090 * 29.98713 * 1 2 3 27 27 H 1.08999 * 109.46585 * 149.98500 * 1 2 3 28 28 H 0.96997 * 120.00421 * 0.02562 * 5 4 3 29 29 H 0.97001 * 119.99701 * 179.97438 * 5 4 3 30 30 H 1.08000 * 120.45562 * 179.97438 * 6 4 3 31 31 H 1.07999 * 120.74879 * 180.25229 * 7 6 4 32 32 H 1.09001 * 109.46679 * 319.99524 * 9 8 2 33 33 H 1.09003 * 109.47405 * 199.99861 * 9 8 2 34 34 H 0.97000 * 119.99316 * 0.02562 * 10 9 8 35 35 H 1.07993 * 120.43040 * 0.02562 * 12 11 10 36 36 H 0.96999 * 120.00552 * 179.97438 * 18 17 15 37 37 H 1.07999 * 120.43574 * 180.25455 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1583 1.1478 0.0000 4 6 3.4814 1.1952 -0.0005 5 7 4.1265 2.4264 -0.0010 6 6 4.2319 0.0236 -0.0005 7 6 3.5770 -1.1946 0.0052 8 6 2.1881 -1.2004 -0.0005 9 6 1.4326 -2.5044 -0.0002 10 7 0.9793 -2.8064 -1.3602 11 6 0.2564 -3.9648 -1.6096 12 6 -0.1844 -4.2695 -2.9038 13 7 -0.8682 -5.3766 -3.1042 14 6 -1.1418 -6.2042 -2.0916 15 6 -1.8779 -7.3816 -2.3450 16 1 -2.1261 -7.6554 -3.3598 17 6 -2.2862 -8.1948 -1.2805 18 7 -1.8752 -7.9377 -0.0665 19 14 -3.4119 -9.6517 -1.5966 20 1 -2.5960 -10.8816 -1.7590 21 1 -4.3378 -9.8200 -0.4479 22 1 -4.1969 -9.4113 -2.8340 23 7 -0.7413 -5.9424 -0.8443 24 6 -0.0487 -4.8560 -0.5728 25 1 -0.3633 -0.0003 1.0277 26 1 -0.3633 0.8901 -0.5136 27 1 -0.3632 -0.8899 -0.5141 28 1 3.6076 3.2459 -0.0006 29 1 5.0957 2.4661 -0.0010 30 1 5.3111 0.0648 -0.0013 31 1 4.1330 -2.1204 0.0094 32 1 0.5697 -2.4241 0.6609 33 1 2.0862 -3.3030 0.3507 34 1 1.1844 -2.1969 -2.0863 35 1 0.0338 -3.6049 -3.7266 36 1 -2.1583 -8.5008 0.6709 37 1 0.2756 -4.6521 0.4370 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167785729.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:42 Heat of formation + Delta-G solvation = 65.719533 kcal Electronic energy + Delta-G solvation = -20992.869778 eV Core-core repulsion = 17769.083568 eV Total energy + Delta-G solvation = -3223.786210 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.40334 -40.75476 -37.54128 -35.86308 -35.06703 -33.75848 -33.61082 -32.25347 -30.56364 -28.88758 -27.25278 -25.86828 -24.58504 -23.48912 -23.04014 -22.19006 -19.68688 -18.50008 -18.29374 -17.82767 -17.29442 -17.02698 -16.28744 -16.07819 -15.84765 -15.54826 -15.18917 -14.96438 -14.57098 -14.40531 -14.08746 -13.84790 -13.69319 -13.56530 -12.99813 -12.96369 -12.87195 -12.60304 -12.41339 -11.90183 -11.56038 -11.43485 -11.20780 -11.09839 -10.69927 -10.58515 -10.38770 -9.17976 -8.71715 -8.44554 -8.28420 -6.28185 0.27837 0.45879 0.92641 1.07010 1.44845 1.55146 1.61335 2.29723 2.60131 2.73063 2.88493 3.17027 3.61930 3.81253 4.00235 4.02550 4.08791 4.13464 4.18489 4.35438 4.40565 4.60943 4.68472 4.73887 4.77384 4.80501 4.88766 5.13179 5.20583 5.23303 5.38331 5.46223 5.61802 5.69468 6.28273 6.40592 6.55418 6.58264 6.63970 6.83942 7.08988 7.35586 7.38287 8.34760 8.54714 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.044648 B = 0.002976 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.972839 B = 9405.419508 C = 9460.565174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.186 3.814 3 N -0.570 5.570 4 C 0.396 3.604 5 N -0.839 5.839 6 C -0.247 4.247 7 C -0.017 4.017 8 C -0.218 4.218 9 C 0.193 3.807 10 N -0.730 5.730 11 C 0.000 4.000 12 C 0.084 3.916 13 N -0.589 5.589 14 C 0.338 3.662 15 C -0.460 4.460 16 H 0.080 0.920 17 C 0.027 3.973 18 N -0.764 5.764 19 Si 0.992 3.008 20 H -0.261 1.261 21 H -0.265 1.265 22 H -0.261 1.261 23 N -0.507 5.507 24 C 0.077 3.923 25 H 0.085 0.915 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.407 0.593 29 H 0.421 0.579 30 H 0.157 0.843 31 H 0.148 0.852 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.395 0.605 35 H 0.160 0.840 36 H 0.278 0.722 37 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.532 16.677 3.806 20.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.048 3.952 3 N -0.290 5.290 4 C 0.157 3.843 5 N -0.384 5.384 6 C -0.271 4.271 7 C -0.043 4.043 8 C -0.223 4.223 9 C 0.068 3.932 10 N -0.366 5.366 11 C -0.106 4.106 12 C -0.089 4.089 13 N -0.308 5.308 14 C 0.094 3.906 15 C -0.497 4.497 16 H 0.098 0.902 17 C -0.194 4.194 18 N -0.388 5.388 19 Si 0.812 3.188 20 H -0.186 1.186 21 H -0.189 1.189 22 H -0.184 1.184 23 N -0.224 5.224 24 C -0.098 4.098 25 H 0.103 0.897 26 H 0.095 0.905 27 H 0.096 0.904 28 H 0.237 0.763 29 H 0.253 0.747 30 H 0.174 0.826 31 H 0.166 0.834 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.230 0.770 35 H 0.177 0.823 36 H 0.089 0.911 37 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 10.570 16.487 4.050 19.998 hybrid contribution 0.832 0.108 -0.137 0.850 sum 11.401 16.595 3.912 20.511 Atomic orbital electron populations 1.20811 0.88535 1.03644 1.03574 1.20916 0.96761 0.86964 0.90608 1.67019 1.08588 1.30219 1.23200 1.18679 0.88312 0.87865 0.89415 1.42189 1.09916 1.03924 1.82357 1.21561 1.01829 0.91143 1.12582 1.21506 0.93080 0.98841 0.90882 1.20304 0.94800 0.94953 1.12270 1.19735 0.96563 0.92403 0.84474 1.43689 1.62176 1.22058 1.08701 1.19154 1.03290 0.92468 0.95704 1.22758 0.96524 0.94991 0.94675 1.68534 1.19636 1.06269 1.36398 1.20079 0.93280 0.93770 0.83421 1.19315 1.31021 1.04321 0.95064 0.90198 1.26869 0.97307 1.01260 0.93985 1.70215 1.33686 1.34353 1.00592 0.85061 0.77829 0.76781 0.79135 1.18613 1.18939 1.18436 1.69188 1.13120 1.18144 1.21936 1.23066 0.97371 0.91086 0.98308 0.89661 0.90507 0.90443 0.76333 0.74704 0.82584 0.83381 0.92618 0.92552 0.77006 0.82330 0.91113 0.83569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.46 9.42 71.23 0.67 -1.79 16 2 C 0.19 4.53 6.78 42.49 0.29 4.82 16 3 N -0.57 -13.78 10.30 -181.35 -1.87 -15.65 16 4 C 0.40 7.73 7.75 133.06 1.03 8.77 16 5 N -0.84 -9.94 9.07 -55.44 -0.50 -10.44 16 6 C -0.25 -4.28 9.94 22.50 0.22 -4.05 16 7 C -0.02 -0.34 9.81 22.44 0.22 -0.12 16 8 C -0.22 -5.11 5.27 -19.76 -0.10 -5.22 16 9 C 0.19 5.13 4.20 85.63 0.36 5.49 16 10 N -0.73 -22.45 5.02 -341.86 -1.72 -24.17 16 11 C 0.00 0.01 6.72 38.93 0.26 0.27 16 12 C 0.08 3.78 11.20 85.17 0.95 4.74 16 13 N -0.59 -32.21 10.34 -193.43 -2.00 -34.21 16 14 C 0.34 20.07 7.35 134.95 0.99 21.06 16 15 C -0.46 -26.98 9.35 23.42 0.22 -26.76 16 16 H 0.08 4.58 7.86 -2.91 -0.02 4.56 16 17 C 0.03 1.43 5.49 85.30 0.47 1.90 16 18 N -0.76 -42.34 11.44 21.84 0.25 -42.09 16 19 Si 0.99 40.10 29.57 68.60 2.03 42.13 16 20 H -0.26 -10.07 7.11 99.48 0.71 -9.37 16 21 H -0.27 -10.07 7.11 99.48 0.71 -9.36 16 22 H -0.26 -10.36 7.11 99.48 0.71 -9.66 16 23 N -0.51 -28.94 7.86 -193.42 -1.52 -30.46 16 24 C 0.08 3.65 10.58 85.17 0.90 4.55 16 25 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 26 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.08 1.94 6.31 -2.39 -0.02 1.92 16 28 H 0.41 4.32 8.95 -92.71 -0.83 3.49 16 29 H 0.42 2.47 8.82 -92.71 -0.82 1.65 16 30 H 0.16 1.74 8.06 -2.91 -0.02 1.72 16 31 H 0.15 2.46 8.06 -2.91 -0.02 2.44 16 32 H 0.06 1.53 7.13 -2.39 -0.02 1.52 16 33 H 0.06 1.51 7.88 -2.39 -0.02 1.49 16 34 H 0.40 11.02 8.49 -92.71 -0.79 10.23 16 35 H 0.16 5.86 8.06 -2.91 -0.02 5.83 16 36 H 0.28 13.84 8.29 -92.71 -0.77 13.07 16 37 H 0.15 6.09 6.88 -2.91 -0.02 6.07 16 Total: -1.00 -72.09 319.84 -0.13 -72.22 By element: Atomic # 1 Polarization: 30.29 SS G_CDS: -1.29 Total: 29.00 kcal Atomic # 6 Polarization: 7.17 SS G_CDS: 6.48 Total: 13.66 kcal Atomic # 7 Polarization: -149.65 SS G_CDS: -7.36 Total: -157.02 kcal Atomic # 14 Polarization: 40.10 SS G_CDS: 2.03 Total: 42.13 kcal Total: -72.09 -0.13 -72.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167785729.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.943 kcal (2) G-P(sol) polarization free energy of solvation -72.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds