Wall clock time and date at job start Tue Mar 31 2020 05:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00010 * 2 1 4 4 H 1.48501 * 109.47081 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47082 * 300.00038 * 3 2 1 6 6 H 1.48504 * 109.47228 * 60.00123 * 3 2 1 7 7 C 1.37872 * 119.99927 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00030 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00016 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47274 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47564 * 179.97438 * 10 9 7 12 12 N 1.46497 * 109.47289 * 179.97438 * 11 10 9 13 13 C 1.38421 * 119.99932 * 180.02562 * 12 11 10 14 14 N 1.32546 * 119.14786 * 359.97438 * 13 12 11 15 15 C 1.32311 * 120.96396 * 179.97438 * 14 13 12 16 16 C 1.38455 * 119.27762 * 359.74706 * 15 14 13 17 17 C 1.39651 * 118.44709 * 0.51588 * 16 15 14 18 18 C 1.48374 * 120.50713 * 179.76169 * 17 16 15 19 19 C 1.39438 * 120.10304 * 179.69912 * 18 17 16 20 20 N 1.32014 * 119.87535 * 179.76255 * 19 18 17 21 21 C 1.32192 * 120.08188 * 0.51526 * 20 19 18 22 22 C 1.38516 * 120.20333 * 359.48235 * 21 20 19 23 23 N 1.31958 * 120.12294 * 0.25539 * 22 21 20 24 24 N 1.32337 * 119.15026 * 180.02562 * 13 12 11 25 25 H 0.97005 * 119.99607 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47213 * 59.99843 * 9 7 2 27 27 H 1.08992 * 109.47132 * 299.99728 * 9 7 2 28 28 H 1.09004 * 109.47155 * 60.00062 * 10 9 7 29 29 H 1.09004 * 109.47031 * 300.00417 * 10 9 7 30 30 H 1.09004 * 109.46630 * 59.99991 * 11 10 9 31 31 H 1.08995 * 109.46955 * 300.00974 * 11 10 9 32 32 H 0.97002 * 119.99877 * 0.02562 * 12 11 10 33 33 H 1.07998 * 120.35848 * 180.02562 * 15 14 13 34 34 H 1.07997 * 120.77613 * 180.25435 * 16 15 14 35 35 H 1.08006 * 120.06436 * 0.04299 * 19 18 17 36 36 H 1.08002 * 119.90180 * 179.76691 * 21 20 19 37 37 H 1.07997 * 119.93219 * 180.28416 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6620 0.0005 11 6 1.4802 -4.9871 0.0012 12 7 2.4322 -6.1006 0.0006 13 6 1.9708 -7.4056 0.0004 14 7 0.6642 -7.6284 0.0014 15 6 0.1839 -8.8612 0.0008 16 6 1.0633 -9.9306 -0.0061 17 6 2.4342 -9.6645 -0.0013 18 6 3.4173 -10.7758 -0.0031 19 6 4.7842 -10.5004 -0.0045 20 7 5.6549 -11.4927 -0.0014 21 6 5.2321 -12.7452 -0.0072 22 6 3.8750 -13.0226 -0.0057 23 7 2.9976 -12.0370 -0.0036 24 7 2.8456 -8.3986 0.0004 25 1 -0.4850 0.8401 -0.0004 26 1 0.6246 -2.5570 -0.8897 27 1 0.6241 -2.5566 0.8902 28 1 2.8719 -3.6043 0.8905 29 1 2.8719 -3.6043 -0.8895 30 1 0.8533 -5.0450 -0.8886 31 1 0.8538 -5.0445 0.8913 32 1 3.3859 -5.9233 0.0002 33 1 -0.8826 -9.0315 0.0012 34 1 0.6977 -10.9468 -0.0109 35 1 5.1300 -9.4772 -0.0037 36 1 5.9470 -13.5548 -0.0084 37 1 3.5345 -14.0475 -0.0058 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168429701.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:03 Heat of formation + Delta-G solvation = 95.507616 kcal Electronic energy + Delta-G solvation = -20234.538036 eV Core-core repulsion = 17012.043534 eV Total energy + Delta-G solvation = -3222.494502 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.58321 -40.66288 -36.54975 -34.92271 -34.10506 -33.72066 -32.22170 -31.21154 -29.90098 -26.67885 -25.94334 -25.08093 -23.44567 -23.36370 -21.87868 -20.43672 -18.30885 -18.12589 -17.18305 -17.10012 -16.28105 -15.98074 -15.63170 -15.44557 -15.06329 -14.52767 -14.45054 -14.21396 -14.13623 -13.79880 -13.05493 -12.31159 -12.18180 -12.04041 -11.80794 -11.76602 -11.06260 -11.03989 -10.96393 -10.71624 -10.55686 -10.49856 -9.82341 -9.64061 -9.50138 -9.41023 -9.13055 -9.12143 -8.38181 -7.95415 -6.02804 -4.05529 -0.10175 0.65194 1.18972 1.43152 2.79617 3.28835 3.29827 3.37396 3.40656 3.42682 3.83172 3.95371 3.97201 4.22902 4.34521 4.44360 4.64898 4.75807 4.96131 5.07803 5.17098 5.28998 5.33302 5.55608 5.72763 5.77579 5.91948 6.12180 6.16058 6.59521 6.62012 6.79657 6.87591 6.95644 7.20035 7.31908 7.55492 7.62801 7.74937 7.96187 8.34649 8.37986 9.01262 9.58795 11.08506 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.035935 B = 0.002450 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.000439 B =11427.071054 C =12180.320270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.056 0.944 9 C 0.025 3.975 10 C -0.122 4.122 11 C 0.133 3.867 12 N -0.689 5.689 13 C 0.573 3.427 14 N -0.556 5.556 15 C 0.195 3.805 16 C -0.260 4.260 17 C 0.253 3.747 18 C 0.116 3.884 19 C 0.098 3.902 20 N -0.441 5.441 21 C 0.057 3.943 22 C 0.051 3.949 23 N -0.419 5.419 24 N -0.567 5.567 25 H 0.260 0.740 26 H 0.019 0.981 27 H 0.019 0.981 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.413 0.587 33 H 0.171 0.829 34 H 0.150 0.850 35 H 0.183 0.817 36 H 0.173 0.827 37 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.670 -27.261 -0.023 27.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.074 0.926 9 C -0.012 4.012 10 C -0.161 4.161 11 C 0.010 3.990 12 N -0.324 5.324 13 C 0.215 3.785 14 N -0.279 5.279 15 C 0.026 3.974 16 C -0.288 4.288 17 C 0.105 3.895 18 C -0.023 4.023 19 C -0.063 4.063 20 N -0.155 5.155 21 C -0.104 4.104 22 C -0.110 4.110 23 N -0.135 5.135 24 N -0.292 5.292 25 H 0.070 0.930 26 H 0.038 0.962 27 H 0.038 0.962 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.250 0.750 33 H 0.188 0.812 34 H 0.168 0.832 35 H 0.200 0.800 36 H 0.190 0.810 37 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 5.730 -25.942 -0.013 26.567 hybrid contribution 0.453 0.053 -0.006 0.456 sum 6.183 -25.888 -0.019 26.616 Atomic orbital electron populations 1.69975 1.06042 1.26569 1.50711 1.25028 0.94869 0.99319 0.95290 0.86528 0.80082 0.83741 0.77594 1.19750 1.20997 1.21001 1.21241 0.93061 0.90913 1.50736 0.92583 1.19018 0.93794 0.90752 0.97675 1.21918 0.99889 0.93209 1.01038 1.21665 0.91277 0.83956 1.02068 1.44613 1.10353 1.00366 1.77061 1.19211 0.84663 0.86644 0.87953 1.68006 1.13912 1.24911 1.21040 1.22991 1.00676 0.86197 0.87519 1.22452 0.93586 1.02279 1.10454 1.18932 0.90580 0.88401 0.91595 1.20203 0.92443 0.90582 0.99098 1.23983 0.89399 1.00430 0.92464 1.68590 1.38140 1.00078 1.08653 1.23997 0.96126 0.95197 0.95046 1.23782 0.90724 0.99509 0.97016 1.68201 1.38701 0.99095 1.07494 1.67570 1.39350 0.98933 1.23326 0.92992 0.96230 0.96217 0.92659 0.92652 0.91669 0.91655 0.75031 0.81210 0.83185 0.80004 0.80962 0.80722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.67 13.29 55.43 0.74 -25.93 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.52 -14.53 9.11 -34.44 -0.31 -14.84 16 8 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 9 C 0.03 0.63 4.97 -27.88 -0.14 0.50 16 10 C -0.12 -2.39 5.27 -26.73 -0.14 -2.53 16 11 C 0.13 2.29 5.64 -4.04 -0.02 2.26 16 12 N -0.69 -10.49 5.70 -62.33 -0.36 -10.85 16 13 C 0.57 8.80 8.42 -322.92 -2.72 6.08 16 14 N -0.56 -8.35 9.57 -13.98 -0.13 -8.48 16 15 C 0.19 2.26 11.29 -17.27 -0.19 2.06 16 16 C -0.26 -2.91 9.69 -38.97 -0.38 -3.28 16 17 C 0.25 3.20 6.76 -82.62 -0.56 2.64 16 18 C 0.12 1.30 6.73 -82.78 -0.56 0.74 16 19 C 0.10 1.05 10.77 -17.03 -0.18 0.86 16 20 N -0.44 -4.37 10.49 -12.76 -0.13 -4.51 16 21 C 0.06 0.38 11.22 -17.29 -0.19 0.19 16 22 C 0.05 0.34 11.22 -17.39 -0.20 0.15 16 23 N -0.42 -4.11 9.67 -9.59 -0.09 -4.20 16 24 N -0.57 -8.00 9.61 -10.47 -0.10 -8.10 16 25 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 26 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 32 H 0.41 5.64 8.59 -40.82 -0.35 5.29 16 33 H 0.17 1.34 8.06 -52.49 -0.42 0.92 16 34 H 0.15 1.38 7.64 -52.49 -0.40 0.98 16 35 H 0.18 1.88 7.58 -52.48 -0.40 1.49 16 36 H 0.17 0.52 8.06 -52.49 -0.42 0.10 16 37 H 0.18 0.49 8.06 -52.49 -0.42 0.06 16 LS Contribution 328.63 15.07 4.95 4.95 Total: -1.00 -32.87 328.63 -10.34 -43.21 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -4.50 Total: 1.08 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: -5.69 Total: -3.66 kcal Atomic # 7 Polarization: -62.00 SS G_CDS: -0.08 Total: -62.08 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.87 -10.34 -43.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168429701.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.719 kcal (2) G-P(sol) polarization free energy of solvation -32.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds