Wall clock time and date at job start Tue Mar 31 2020 05:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00010 * 2 1 4 4 H 1.48501 * 109.47081 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47082 * 300.00038 * 3 2 1 6 6 H 1.48504 * 109.47228 * 60.00123 * 3 2 1 7 7 C 1.37872 * 119.99927 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00030 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00016 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47274 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47564 * 179.97438 * 10 9 7 12 12 N 1.46497 * 109.47289 * 179.97438 * 11 10 9 13 13 C 1.38421 * 119.99932 * 180.02562 * 12 11 10 14 14 N 1.32546 * 119.14786 * 359.97438 * 13 12 11 15 15 C 1.32311 * 120.96396 * 179.97438 * 14 13 12 16 16 C 1.38455 * 119.27762 * 359.74706 * 15 14 13 17 17 C 1.39651 * 118.44709 * 0.51588 * 16 15 14 18 18 C 1.48374 * 120.50713 * 179.76169 * 17 16 15 19 19 C 1.39438 * 120.10304 * 179.69912 * 18 17 16 20 20 N 1.32014 * 119.87535 * 179.76255 * 19 18 17 21 21 C 1.32192 * 120.08188 * 0.51526 * 20 19 18 22 22 C 1.38516 * 120.20333 * 359.48235 * 21 20 19 23 23 N 1.31958 * 120.12294 * 0.25539 * 22 21 20 24 24 N 1.32337 * 119.15026 * 180.02562 * 13 12 11 25 25 H 0.97005 * 119.99607 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47213 * 59.99843 * 9 7 2 27 27 H 1.08992 * 109.47132 * 299.99728 * 9 7 2 28 28 H 1.09004 * 109.47155 * 60.00062 * 10 9 7 29 29 H 1.09004 * 109.47031 * 300.00417 * 10 9 7 30 30 H 1.09004 * 109.46630 * 59.99991 * 11 10 9 31 31 H 1.08995 * 109.46955 * 300.00974 * 11 10 9 32 32 H 0.97002 * 119.99877 * 0.02562 * 12 11 10 33 33 H 1.07998 * 120.35848 * 180.02562 * 15 14 13 34 34 H 1.07997 * 120.77613 * 180.25435 * 16 15 14 35 35 H 1.08006 * 120.06436 * 0.04299 * 19 18 17 36 36 H 1.08002 * 119.90180 * 179.76691 * 21 20 19 37 37 H 1.07997 * 119.93219 * 180.28416 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6620 0.0005 11 6 1.4802 -4.9871 0.0012 12 7 2.4322 -6.1006 0.0006 13 6 1.9708 -7.4056 0.0004 14 7 0.6642 -7.6284 0.0014 15 6 0.1839 -8.8612 0.0008 16 6 1.0633 -9.9306 -0.0061 17 6 2.4342 -9.6645 -0.0013 18 6 3.4173 -10.7758 -0.0031 19 6 4.7842 -10.5004 -0.0045 20 7 5.6549 -11.4927 -0.0014 21 6 5.2321 -12.7452 -0.0072 22 6 3.8750 -13.0226 -0.0057 23 7 2.9976 -12.0370 -0.0036 24 7 2.8456 -8.3986 0.0004 25 1 -0.4850 0.8401 -0.0004 26 1 0.6246 -2.5570 -0.8897 27 1 0.6241 -2.5566 0.8902 28 1 2.8719 -3.6043 0.8905 29 1 2.8719 -3.6043 -0.8895 30 1 0.8533 -5.0450 -0.8886 31 1 0.8538 -5.0445 0.8913 32 1 3.3859 -5.9233 0.0002 33 1 -0.8826 -9.0315 0.0012 34 1 0.6977 -10.9468 -0.0109 35 1 5.1300 -9.4772 -0.0037 36 1 5.9470 -13.5548 -0.0084 37 1 3.5345 -14.0475 -0.0058 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168429701.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:03 Heat of formation + Delta-G solvation = 74.889091 kcal Electronic energy + Delta-G solvation = -20235.432122 eV Core-core repulsion = 17012.043534 eV Total energy + Delta-G solvation = -3223.388588 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.35619 -41.55713 -37.85075 -35.85226 -35.38978 -34.97309 -33.69492 -32.32096 -31.07009 -28.36556 -26.83571 -25.85010 -24.98299 -24.31376 -23.01967 -22.12506 -19.27850 -19.01340 -18.47304 -17.88997 -17.80659 -16.89754 -16.73813 -16.48061 -16.27586 -16.05519 -15.60302 -15.45764 -15.12989 -14.59025 -14.29036 -13.75767 -13.74447 -13.66950 -12.84367 -12.73522 -12.60060 -12.56008 -12.33809 -12.01140 -11.93084 -11.87569 -11.48018 -11.35757 -11.18261 -10.55663 -10.43352 -10.19316 -10.01456 -9.06852 -8.19865 -6.30622 -0.86044 0.00577 0.21587 0.57505 1.41003 1.41262 1.54369 1.74507 2.41557 2.56602 2.57753 2.99460 3.13870 3.16949 3.35872 3.41255 3.58207 3.82540 4.11008 4.19660 4.22330 4.24534 4.33786 4.43464 4.57720 4.58251 4.73735 4.97257 4.99805 5.16335 5.27268 5.34238 5.51298 5.71863 5.73990 5.84598 6.11816 6.16129 6.23727 6.43469 6.68493 6.86373 7.29377 7.38615 8.92272 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.035935 B = 0.002450 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.000439 B =11427.071054 C =12180.320270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.002 4.002 3 Si 0.965 3.035 4 H -0.262 1.262 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.541 4.541 8 H 0.062 0.938 9 C 0.027 3.973 10 C -0.105 4.105 11 C 0.155 3.845 12 N -0.691 5.691 13 C 0.556 3.444 14 N -0.586 5.586 15 C 0.192 3.808 16 C -0.250 4.250 17 C 0.240 3.760 18 C 0.093 3.907 19 C 0.084 3.916 20 N -0.464 5.464 21 C 0.069 3.931 22 C 0.061 3.939 23 N -0.433 5.433 24 N -0.576 5.576 25 H 0.263 0.737 26 H -0.004 1.004 27 H -0.004 1.004 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.418 0.582 33 H 0.206 0.794 34 H 0.173 0.827 35 H 0.173 0.827 36 H 0.215 0.785 37 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.793 -29.650 -0.027 30.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.200 4.200 3 Si 0.790 3.210 4 H -0.185 1.185 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.579 4.579 8 H 0.081 0.919 9 C -0.011 4.011 10 C -0.143 4.143 11 C 0.031 3.969 12 N -0.328 5.328 13 C 0.199 3.801 14 N -0.310 5.310 15 C 0.025 3.975 16 C -0.276 4.276 17 C 0.093 3.907 18 C -0.044 4.044 19 C -0.074 4.074 20 N -0.179 5.179 21 C -0.093 4.093 22 C -0.102 4.102 23 N -0.149 5.149 24 N -0.301 5.301 25 H 0.072 0.928 26 H 0.014 0.986 27 H 0.014 0.986 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.256 0.744 33 H 0.223 0.777 34 H 0.190 0.810 35 H 0.190 0.810 36 H 0.232 0.768 37 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 6.853 -28.345 -0.018 29.162 hybrid contribution 0.125 0.503 -0.005 0.519 sum 6.978 -27.842 -0.022 28.703 Atomic orbital electron populations 1.70106 1.07769 1.27708 1.51696 1.25985 0.95787 1.03398 0.94829 0.85392 0.79092 0.78800 0.77708 1.18543 1.20457 1.20468 1.21697 0.93629 0.92177 1.50397 0.91950 1.18906 0.94289 0.92515 0.95341 1.21618 0.98628 0.92326 1.01700 1.21175 0.90933 0.83656 1.01105 1.44298 1.10138 1.00145 1.78244 1.19307 0.85222 0.86712 0.88903 1.68024 1.13906 1.26805 1.22233 1.23624 1.02438 0.85207 0.86272 1.22717 0.92920 1.03210 1.08739 1.19367 0.91870 0.88313 0.91140 1.20040 0.92132 0.90950 1.01309 1.23847 0.89563 1.00583 0.93455 1.68609 1.38400 1.01254 1.09606 1.24763 0.97330 0.94915 0.92248 1.24568 0.90430 1.00582 0.94579 1.68206 1.39769 0.98910 1.07981 1.67561 1.39270 0.99456 1.23777 0.92774 0.98592 0.98578 0.91918 0.91910 0.92685 0.92670 0.74385 0.77713 0.80964 0.80997 0.76840 0.76348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.82 13.29 21.45 0.28 -56.54 16 2 C 0.00 -0.13 5.46 84.65 0.46 0.33 16 3 Si 0.97 44.28 29.54 68.60 2.03 46.30 16 4 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 5 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 6 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 7 C -0.54 -30.56 9.11 25.60 0.23 -30.32 16 8 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 9 C 0.03 1.42 4.97 29.85 0.15 1.57 16 10 C -0.10 -4.16 5.27 30.59 0.16 -4.00 16 11 C 0.16 5.51 5.64 86.38 0.49 6.00 16 12 N -0.69 -21.60 5.70 -351.12 -2.00 -23.61 16 13 C 0.56 17.45 8.42 261.53 2.20 19.65 16 14 N -0.59 -17.73 9.57 -198.14 -1.90 -19.63 16 15 C 0.19 4.25 11.29 84.67 0.96 5.21 16 16 C -0.25 -5.28 9.69 22.66 0.22 -5.06 16 17 C 0.24 6.03 6.76 41.99 0.28 6.32 16 18 C 0.09 2.03 6.73 41.97 0.28 2.31 16 19 C 0.08 1.80 10.77 84.95 0.92 2.72 16 20 N -0.46 -8.58 10.49 -194.29 -2.04 -10.62 16 21 C 0.07 0.71 11.22 84.71 0.95 1.66 16 22 C 0.06 0.59 11.22 84.74 0.95 1.55 16 23 N -0.43 -7.54 9.67 -184.24 -1.78 -9.32 16 24 N -0.58 -16.61 9.61 -187.03 -1.80 -18.40 16 25 H 0.26 15.04 8.31 -92.70 -0.77 14.27 16 26 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 27 H 0.00 -0.24 8.14 -2.39 -0.02 -0.25 16 28 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 29 H 0.06 2.40 8.14 -2.38 -0.02 2.38 16 30 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.42 11.71 8.59 -92.71 -0.80 10.91 16 33 H 0.21 2.82 8.06 -2.91 -0.02 2.80 16 34 H 0.17 2.79 7.64 -2.91 -0.02 2.76 16 35 H 0.17 3.80 7.58 -2.91 -0.02 3.78 16 36 H 0.22 0.26 8.06 -2.91 -0.02 0.24 16 37 H 0.22 0.06 8.06 -2.91 -0.02 0.03 16 Total: -1.00 -73.09 328.63 1.35 -71.74 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: 0.30 Total: 12.16 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: 8.25 Total: 7.92 kcal Atomic # 7 Polarization: -128.89 SS G_CDS: -9.23 Total: -138.12 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.30 kcal Total: -73.09 1.35 -71.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168429701.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.627 kcal (2) G-P(sol) polarization free energy of solvation -73.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds