Wall clock time and date at job start Tue Mar 31 2020 05:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86804 * 120.00082 * 2 1 4 4 H 1.48499 * 109.47126 * 174.99994 * 3 2 1 5 5 H 1.48506 * 109.47030 * 295.00035 * 3 2 1 6 6 H 1.48497 * 109.47113 * 55.00001 * 3 2 1 7 7 C 1.40098 * 119.99866 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99481 * 185.38932 * 7 2 1 9 9 C 1.40783 * 120.00061 * 5.37991 * 7 2 1 10 10 N 1.33935 * 120.27647 * 5.39598 * 9 7 2 11 11 C 1.31703 * 119.88573 * 180.02562 * 10 9 7 12 12 C 1.39001 * 120.48519 * 0.02562 * 11 10 9 13 13 N 1.32207 * 120.57031 * 359.97438 * 12 11 10 14 14 C 1.32644 * 120.08769 * 0.02562 * 13 12 11 15 15 N 1.37943 * 120.23663 * 179.97438 * 14 13 12 16 16 C 1.46502 * 119.99850 * 265.05692 * 15 14 13 17 17 C 1.53002 * 109.46792 * 89.99905 * 16 15 14 18 18 N 1.46900 * 109.46930 * 180.02562 * 17 16 15 19 19 C 1.39661 * 120.00241 * 85.05968 * 15 14 13 20 20 C 1.39361 * 120.49860 * 5.31678 * 19 15 14 21 21 C 1.38480 * 118.35661 * 179.75826 * 20 19 15 22 22 C 1.38296 * 119.24115 * 0.53784 * 21 20 19 23 23 N 1.31862 * 120.93685 * 359.69894 * 22 21 20 24 24 C 1.31797 * 121.80826 * 0.02584 * 23 22 21 25 25 H 0.97004 * 120.00013 * 359.97438 * 1 2 3 26 26 H 1.08002 * 119.75329 * 180.27835 * 11 10 9 27 27 H 1.08003 * 119.71487 * 180.02562 * 12 11 10 28 28 H 1.08995 * 109.47453 * 210.00201 * 16 15 14 29 29 H 1.08998 * 109.47405 * 330.00323 * 16 15 14 30 30 H 1.08995 * 109.47364 * 300.00351 * 17 16 15 31 31 H 1.08996 * 109.47137 * 60.00465 * 17 16 15 32 32 H 1.00895 * 111.00294 * 56.05083 * 18 17 16 33 33 H 1.00910 * 110.99924 * 180.02562 * 18 17 16 34 34 H 1.08005 * 120.81829 * 0.02562 * 20 19 15 35 35 H 1.08001 * 120.37481 * 180.26055 * 21 20 19 36 36 H 1.07998 * 119.52716 * 179.72183 * 22 21 20 37 37 H 1.08001 * 119.67690 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6178 0.0000 4 1 3.6969 1.3490 0.1220 5 1 1.9765 2.3423 -1.2690 6 1 1.7935 2.4479 1.1468 7 6 2.0079 -1.2133 -0.0005 8 1 3.0843 -1.2153 0.0873 9 6 1.3086 -2.4298 -0.1154 10 7 -0.0130 -2.4310 -0.3325 11 6 -0.6596 -3.5735 -0.4382 12 6 0.0195 -4.7811 -0.3255 13 7 1.3239 -4.8016 -0.1112 14 6 1.9976 -3.6643 -0.0011 15 7 3.3586 -3.6821 0.2230 16 6 3.8773 -3.5814 1.5895 17 6 4.0192 -4.9833 2.1857 18 7 4.5387 -4.8823 3.5560 19 6 4.2421 -3.7961 -0.8526 20 6 3.7670 -3.7815 -2.1627 21 6 4.6826 -3.8925 -3.1956 22 6 6.0263 -4.0244 -2.8960 23 7 6.4437 -4.0397 -1.6453 24 6 5.6073 -3.9315 -0.6325 25 1 -0.4850 0.8401 0.0004 26 1 -1.7246 -3.5721 -0.6178 27 1 -0.5231 -5.7107 -0.4147 28 1 4.8516 -3.0931 1.5732 29 1 3.1877 -2.9960 2.1977 30 1 3.0448 -5.4716 2.2019 31 1 4.7088 -5.5687 1.5776 32 1 3.9501 -4.2909 4.1233 33 1 4.6419 -5.7959 3.9719 34 1 2.7112 -3.6818 -2.3673 35 1 4.3507 -3.8806 -4.2233 36 1 6.7439 -4.1158 -3.6979 37 1 5.9868 -3.9477 0.3785 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168832986.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:05 Heat of formation + Delta-G solvation = 94.722437 kcal Electronic energy + Delta-G solvation = -22507.063938 eV Core-core repulsion = 19284.535388 eV Total energy + Delta-G solvation = -3222.528550 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.05390 -38.91396 -36.62917 -34.28916 -34.14675 -32.00670 -31.58344 -30.37456 -29.15471 -27.00971 -25.93639 -23.46216 -22.80229 -22.16699 -21.84042 -20.39276 -17.81172 -17.32896 -16.63806 -16.39362 -16.02419 -15.33090 -15.14914 -14.84006 -14.34760 -14.07178 -13.72929 -13.49292 -13.21255 -12.97723 -12.91558 -12.39085 -12.18782 -11.96352 -11.65280 -11.51638 -11.36719 -11.00190 -10.80367 -10.44602 -10.07851 -10.02794 -9.71714 -9.26935 -9.04236 -9.00491 -8.59740 -7.98307 -7.79306 -7.01307 -6.55763 -4.90658 1.76469 2.00543 2.25011 2.73684 2.92088 2.97507 3.01972 3.58248 3.69770 4.42297 4.43870 4.83595 5.04161 5.29826 5.35474 5.44172 5.47120 5.53778 5.67612 5.76573 5.85958 5.87290 6.04893 6.10271 6.15673 6.19342 6.37140 6.47845 6.66314 6.74335 6.77402 6.91555 7.10576 7.18363 7.39948 7.48515 7.83127 7.87530 7.96417 8.31953 8.53673 8.64421 9.04788 9.61524 9.88122 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.011523 B = 0.007357 C = 0.006601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2429.255648 B = 3804.865324 C = 4240.681526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.700 5.700 2 C 0.064 3.936 3 Si 0.910 3.090 4 H -0.255 1.255 5 H -0.268 1.268 6 H -0.270 1.270 7 C -0.388 4.388 8 H 0.093 0.907 9 C 0.216 3.784 10 N -0.453 5.453 11 C 0.090 3.910 12 C -0.114 4.114 13 N -0.423 5.423 14 C 0.151 3.849 15 N -0.520 5.520 16 C 0.134 3.866 17 C 0.043 3.957 18 N -0.849 5.849 19 C 0.193 3.807 20 C -0.134 4.134 21 C -0.128 4.128 22 C 0.018 3.982 23 N -0.452 5.452 24 C 0.014 3.986 25 H 0.281 0.719 26 H 0.132 0.868 27 H 0.127 0.873 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.034 0.966 31 H 0.071 0.929 32 H 0.339 0.661 33 H 0.340 0.660 34 H 0.126 0.874 35 H 0.125 0.875 36 H 0.144 0.856 37 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.955 -2.831 0.828 4.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.320 5.320 2 C -0.164 4.164 3 Si 0.733 3.267 4 H -0.178 1.178 5 H -0.193 1.193 6 H -0.195 1.195 7 C -0.418 4.418 8 H 0.111 0.889 9 C 0.090 3.910 10 N -0.170 5.170 11 C -0.081 4.081 12 C -0.276 4.276 13 N -0.137 5.137 14 C -0.086 4.086 15 N -0.223 5.223 16 C 0.010 3.990 17 C -0.089 4.089 18 N -0.378 5.378 19 C 0.087 3.913 20 C -0.164 4.164 21 C -0.148 4.148 22 C -0.142 4.142 23 N -0.160 5.160 24 C -0.149 4.149 25 H 0.092 0.908 26 H 0.150 0.850 27 H 0.145 0.855 28 H 0.099 0.901 29 H 0.095 0.905 30 H 0.053 0.947 31 H 0.090 0.910 32 H 0.151 0.849 33 H 0.152 0.848 34 H 0.144 0.856 35 H 0.143 0.857 36 H 0.161 0.839 37 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 5.161 -2.388 0.826 5.747 hybrid contribution -1.848 0.199 0.049 1.859 sum 3.313 -2.189 0.874 4.066 Atomic orbital electron populations 1.70054 1.07504 1.28914 1.25479 1.26225 0.95002 1.01750 0.93394 0.86195 0.81163 0.80290 0.79065 1.17837 1.19264 1.19467 1.19665 0.95263 0.89049 1.37793 0.88902 1.19393 0.88985 0.92236 0.90422 1.69588 1.07120 1.25089 1.15168 1.23509 0.99996 0.90283 0.94294 1.22419 0.90292 0.97776 1.17112 1.67349 1.08717 1.31286 1.06370 1.18391 0.84094 0.89589 1.16547 1.42517 1.01275 1.75635 1.02896 1.21323 0.99915 0.95611 0.82194 1.22264 0.98579 0.98471 0.89608 1.58691 1.56913 1.18292 1.03937 1.18999 0.90746 0.93079 0.88477 1.21087 1.00455 1.03899 0.90983 1.21825 0.94173 0.99513 0.99311 1.22229 0.93906 1.04548 0.93496 1.67396 1.38658 1.10032 0.99872 1.22264 0.87906 1.06338 0.98378 0.90819 0.85040 0.85539 0.90116 0.90544 0.94737 0.91029 0.84911 0.84843 0.85595 0.85723 0.83906 0.83209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -16.99 11.54 55.56 0.64 -16.35 16 2 C 0.06 1.50 5.48 -17.32 -0.09 1.41 16 3 Si 0.91 17.38 29.56 -169.99 -5.03 12.36 16 4 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 5 H -0.27 -5.09 7.11 56.52 0.40 -4.69 16 6 H -0.27 -5.02 7.11 56.52 0.40 -4.62 16 7 C -0.39 -9.45 8.92 -37.92 -0.34 -9.79 16 8 H 0.09 2.21 7.28 -52.49 -0.38 1.83 16 9 C 0.22 5.39 6.55 -84.61 -0.55 4.84 16 10 N -0.45 -11.43 8.10 -10.79 -0.09 -11.52 16 11 C 0.09 2.00 11.21 -17.32 -0.19 1.80 16 12 C -0.11 -2.46 11.22 -17.11 -0.19 -2.65 16 13 N -0.42 -9.70 10.52 -11.66 -0.12 -9.82 16 14 C 0.15 3.47 4.59 -154.79 -0.71 2.76 16 15 N -0.52 -10.52 1.73 -112.92 -0.20 -10.72 16 16 C 0.13 2.33 5.29 -4.04 -0.02 2.31 16 17 C 0.04 0.67 7.08 -3.82 -0.03 0.64 16 18 N -0.85 -10.79 9.62 -10.37 -0.10 -10.89 16 19 C 0.19 3.82 6.52 -83.61 -0.55 3.28 16 20 C -0.13 -2.65 9.41 -39.07 -0.37 -3.02 16 21 C -0.13 -2.13 10.10 -39.47 -0.40 -2.53 16 22 C 0.02 0.29 11.18 -17.52 -0.20 0.09 16 23 N -0.45 -8.18 10.35 -13.06 -0.14 -8.31 16 24 C 0.01 0.25 10.31 -17.30 -0.18 0.08 16 25 H 0.28 6.12 8.29 -40.82 -0.34 5.78 16 26 H 0.13 2.48 8.06 -52.49 -0.42 2.06 16 27 H 0.13 2.35 8.06 -52.48 -0.42 1.93 16 28 H 0.08 1.31 6.47 -51.93 -0.34 0.98 16 29 H 0.08 1.41 8.04 -51.93 -0.42 0.99 16 30 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.07 1.15 8.06 -51.93 -0.42 0.74 16 32 H 0.34 4.01 8.99 -39.29 -0.35 3.65 16 33 H 0.34 3.67 9.08 -39.29 -0.36 3.31 16 34 H 0.13 2.75 7.12 -52.48 -0.37 2.38 16 35 H 0.12 1.72 8.06 -52.49 -0.42 1.30 16 36 H 0.14 1.87 8.06 -52.49 -0.42 1.44 16 37 H 0.15 2.50 6.25 -52.49 -0.33 2.17 16 LS Contribution 320.58 15.07 4.83 4.83 Total: -1.00 -28.04 320.58 -8.23 -36.27 By element: Atomic # 1 Polarization: 19.16 SS G_CDS: -4.21 Total: 14.94 kcal Atomic # 6 Polarization: 3.03 SS G_CDS: -3.82 Total: -0.78 kcal Atomic # 7 Polarization: -67.61 SS G_CDS: 0.00 Total: -67.61 kcal Atomic # 14 Polarization: 17.38 SS G_CDS: -5.03 Total: 12.36 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -28.04 -8.23 -36.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168832986.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.989 kcal (2) G-P(sol) polarization free energy of solvation -28.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds