Wall clock time and date at job start Tue Mar 31 2020 05:30:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86804 * 120.00082 * 2 1 4 4 H 1.48499 * 109.47126 * 174.99994 * 3 2 1 5 5 H 1.48506 * 109.47030 * 295.00035 * 3 2 1 6 6 H 1.48497 * 109.47113 * 55.00001 * 3 2 1 7 7 C 1.40098 * 119.99866 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99481 * 185.38932 * 7 2 1 9 9 C 1.40783 * 120.00061 * 5.37991 * 7 2 1 10 10 N 1.33935 * 120.27647 * 5.39598 * 9 7 2 11 11 C 1.31703 * 119.88573 * 180.02562 * 10 9 7 12 12 C 1.39001 * 120.48519 * 0.02562 * 11 10 9 13 13 N 1.32207 * 120.57031 * 359.97438 * 12 11 10 14 14 C 1.32644 * 120.08769 * 0.02562 * 13 12 11 15 15 N 1.37943 * 120.23663 * 179.97438 * 14 13 12 16 16 C 1.46502 * 119.99850 * 265.05692 * 15 14 13 17 17 C 1.53002 * 109.46792 * 89.99905 * 16 15 14 18 18 N 1.46900 * 109.46930 * 180.02562 * 17 16 15 19 19 C 1.39661 * 120.00241 * 85.05968 * 15 14 13 20 20 C 1.39361 * 120.49860 * 5.31678 * 19 15 14 21 21 C 1.38480 * 118.35661 * 179.75826 * 20 19 15 22 22 C 1.38296 * 119.24115 * 0.53784 * 21 20 19 23 23 N 1.31862 * 120.93685 * 359.69894 * 22 21 20 24 24 C 1.31797 * 121.80826 * 0.02584 * 23 22 21 25 25 H 0.97004 * 120.00013 * 359.97438 * 1 2 3 26 26 H 1.08002 * 119.75329 * 180.27835 * 11 10 9 27 27 H 1.08003 * 119.71487 * 180.02562 * 12 11 10 28 28 H 1.08995 * 109.47453 * 210.00201 * 16 15 14 29 29 H 1.08998 * 109.47405 * 330.00323 * 16 15 14 30 30 H 1.08995 * 109.47364 * 300.00351 * 17 16 15 31 31 H 1.08996 * 109.47137 * 60.00465 * 17 16 15 32 32 H 1.00895 * 111.00294 * 56.05083 * 18 17 16 33 33 H 1.00910 * 110.99924 * 180.02562 * 18 17 16 34 34 H 1.08005 * 120.81829 * 0.02562 * 20 19 15 35 35 H 1.08001 * 120.37481 * 180.26055 * 21 20 19 36 36 H 1.07998 * 119.52716 * 179.72183 * 22 21 20 37 37 H 1.08001 * 119.67690 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6178 0.0000 4 1 3.6969 1.3490 0.1220 5 1 1.9765 2.3423 -1.2690 6 1 1.7935 2.4479 1.1468 7 6 2.0079 -1.2133 -0.0005 8 1 3.0843 -1.2153 0.0873 9 6 1.3086 -2.4298 -0.1154 10 7 -0.0130 -2.4310 -0.3325 11 6 -0.6596 -3.5735 -0.4382 12 6 0.0195 -4.7811 -0.3255 13 7 1.3239 -4.8016 -0.1112 14 6 1.9976 -3.6643 -0.0011 15 7 3.3586 -3.6821 0.2230 16 6 3.8773 -3.5814 1.5895 17 6 4.0192 -4.9833 2.1857 18 7 4.5387 -4.8823 3.5560 19 6 4.2421 -3.7961 -0.8526 20 6 3.7670 -3.7815 -2.1627 21 6 4.6826 -3.8925 -3.1956 22 6 6.0263 -4.0244 -2.8960 23 7 6.4437 -4.0397 -1.6453 24 6 5.6073 -3.9315 -0.6325 25 1 -0.4850 0.8401 0.0004 26 1 -1.7246 -3.5721 -0.6178 27 1 -0.5231 -5.7107 -0.4147 28 1 4.8516 -3.0931 1.5732 29 1 3.1877 -2.9960 2.1977 30 1 3.0448 -5.4716 2.2019 31 1 4.7088 -5.5687 1.5776 32 1 3.9501 -4.2909 4.1233 33 1 4.6419 -5.7959 3.9719 34 1 2.7112 -3.6818 -2.3673 35 1 4.3507 -3.8806 -4.2233 36 1 6.7439 -4.1158 -3.6979 37 1 5.9868 -3.9477 0.3785 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168832986.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:04 Heat of formation + Delta-G solvation = 76.167210 kcal Electronic energy + Delta-G solvation = -22507.868553 eV Core-core repulsion = 19284.535388 eV Total energy + Delta-G solvation = -3223.333165 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.60085 -40.51784 -38.09297 -36.04263 -35.43763 -33.76932 -32.97919 -32.01467 -30.58643 -28.57053 -27.57042 -25.00143 -24.25035 -23.87290 -23.28625 -21.89576 -19.59439 -18.83133 -18.14563 -18.04020 -17.38863 -16.91227 -16.54140 -16.27223 -15.92947 -15.40135 -15.11478 -14.92675 -14.75894 -14.50804 -14.41421 -14.00127 -13.74728 -13.37118 -13.29174 -13.07454 -12.72234 -12.63192 -12.24880 -12.02412 -11.76679 -11.57493 -11.46996 -11.03271 -10.43893 -10.41325 -9.74862 -9.72889 -9.50627 -8.65150 -8.17295 -6.71511 0.36408 0.50062 0.58251 1.00297 1.34972 1.45604 1.49359 2.09567 2.11861 2.68208 3.04046 3.61605 3.66222 3.76716 3.96475 4.01096 4.06124 4.12191 4.13454 4.28043 4.31491 4.41734 4.49473 4.62069 4.77351 4.78459 4.81089 4.99313 5.05560 5.15874 5.22466 5.33720 5.67350 5.78132 6.05799 6.05938 6.15835 6.46229 6.54848 6.56959 6.89192 7.18472 7.29505 7.84241 8.18766 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.011523 B = 0.007357 C = 0.006601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2429.255648 B = 3804.865324 C = 4240.681526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.735 5.735 2 C 0.027 3.973 3 Si 0.979 3.021 4 H -0.256 1.256 5 H -0.264 1.264 6 H -0.259 1.259 7 C -0.411 4.411 8 H 0.089 0.911 9 C 0.192 3.808 10 N -0.486 5.486 11 C 0.080 3.920 12 C -0.113 4.113 13 N -0.440 5.440 14 C 0.157 3.843 15 N -0.527 5.527 16 C 0.136 3.864 17 C 0.061 3.939 18 N -0.841 5.841 19 C 0.174 3.826 20 C -0.157 4.157 21 C -0.120 4.120 22 C 0.025 3.975 23 N -0.462 5.462 24 C 0.015 3.985 25 H 0.288 0.712 26 H 0.161 0.839 27 H 0.158 0.842 28 H 0.093 0.907 29 H 0.060 0.940 30 H 0.010 0.990 31 H 0.069 0.931 32 H 0.346 0.654 33 H 0.354 0.646 34 H 0.096 0.904 35 H 0.155 0.845 36 H 0.183 0.817 37 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.470 -2.881 0.437 6.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.356 5.356 2 C -0.198 4.198 3 Si 0.799 3.201 4 H -0.180 1.180 5 H -0.189 1.189 6 H -0.183 1.183 7 C -0.441 4.441 8 H 0.107 0.893 9 C 0.065 3.935 10 N -0.204 5.204 11 C -0.090 4.090 12 C -0.274 4.274 13 N -0.154 5.154 14 C -0.080 4.080 15 N -0.232 5.232 16 C 0.012 3.988 17 C -0.071 4.071 18 N -0.373 5.373 19 C 0.069 3.931 20 C -0.188 4.188 21 C -0.140 4.140 22 C -0.134 4.134 23 N -0.170 5.170 24 C -0.147 4.147 25 H 0.099 0.901 26 H 0.178 0.822 27 H 0.175 0.825 28 H 0.112 0.888 29 H 0.079 0.921 30 H 0.029 0.971 31 H 0.087 0.913 32 H 0.158 0.842 33 H 0.167 0.833 34 H 0.114 0.886 35 H 0.173 0.827 36 H 0.200 0.800 37 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 6.678 -2.473 0.450 7.136 hybrid contribution -2.321 0.087 0.103 2.325 sum 4.357 -2.386 0.553 4.998 Atomic orbital electron populations 1.70104 1.08848 1.30187 1.26417 1.27003 0.95688 1.04549 0.92515 0.85178 0.79522 0.76066 0.79330 1.17967 1.18898 1.18327 1.19793 0.95173 0.89855 1.39287 0.89276 1.19751 0.89418 0.93356 0.90983 1.69528 1.07706 1.26742 1.16407 1.23989 1.01359 0.89860 0.93789 1.22941 0.90135 0.98905 1.15401 1.67466 1.09457 1.31368 1.07156 1.18440 0.85251 0.89071 1.15243 1.42555 1.00379 1.76316 1.03946 1.21370 0.99803 0.96601 0.80977 1.21957 0.97274 0.96830 0.91056 1.58645 1.56447 1.19399 1.02770 1.19176 0.91374 0.94255 0.88328 1.21076 0.99644 1.05840 0.92242 1.22145 0.93961 0.97915 1.00023 1.22871 0.94400 1.02351 0.93819 1.67483 1.38616 1.10343 1.00549 1.22401 0.87129 1.05923 0.99218 0.90086 0.82173 0.82495 0.88850 0.92136 0.97136 0.91262 0.84163 0.83283 0.88552 0.82728 0.80025 0.81996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -36.41 11.54 21.85 0.25 -36.16 16 2 C 0.03 1.29 5.48 85.31 0.47 1.76 16 3 Si 0.98 35.80 29.56 68.60 2.03 37.83 16 4 H -0.26 -9.29 7.11 99.48 0.71 -8.58 16 5 H -0.26 -9.43 7.11 99.48 0.71 -8.72 16 6 H -0.26 -8.94 7.11 99.48 0.71 -8.23 16 7 C -0.41 -20.62 8.92 23.34 0.21 -20.41 16 8 H 0.09 4.38 7.28 -2.91 -0.02 4.36 16 9 C 0.19 9.89 6.55 40.34 0.26 10.16 16 10 N -0.49 -25.20 8.10 -188.04 -1.52 -26.72 16 11 C 0.08 3.55 11.21 84.90 0.95 4.50 16 12 C -0.11 -4.84 11.22 84.82 0.95 -3.88 16 13 N -0.44 -20.47 10.52 -190.79 -2.01 -22.48 16 14 C 0.16 7.43 4.59 134.02 0.61 8.04 16 15 N -0.53 -21.75 1.73 -511.17 -0.89 -22.64 16 16 C 0.14 4.78 5.29 86.38 0.46 5.24 16 17 C 0.06 1.90 7.08 86.30 0.61 2.51 16 18 N -0.84 -20.40 9.62 -186.72 -1.80 -22.19 16 19 C 0.17 6.90 6.52 38.33 0.25 7.15 16 20 C -0.16 -6.27 9.41 22.60 0.21 -6.05 16 21 C -0.12 -3.80 10.10 22.34 0.23 -3.58 16 22 C 0.02 0.74 11.18 84.70 0.95 1.69 16 23 N -0.46 -15.71 10.35 -195.24 -2.02 -17.73 16 24 C 0.02 0.55 10.31 84.87 0.88 1.42 16 25 H 0.29 12.76 8.29 -92.71 -0.77 11.99 16 26 H 0.16 5.95 8.06 -2.91 -0.02 5.93 16 27 H 0.16 5.61 8.06 -2.91 -0.02 5.58 16 28 H 0.09 3.00 6.47 -2.39 -0.02 2.99 16 29 H 0.06 2.29 8.04 -2.39 -0.02 2.27 16 30 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 31 H 0.07 2.19 8.06 -2.39 -0.02 2.17 16 32 H 0.35 7.83 8.99 -89.70 -0.81 7.02 16 33 H 0.35 7.07 9.08 -89.69 -0.81 6.26 16 34 H 0.10 4.38 7.12 -2.91 -0.02 4.36 16 35 H 0.16 3.85 8.06 -2.91 -0.02 3.83 16 36 H 0.18 3.93 8.06 -2.91 -0.02 3.91 16 37 H 0.16 5.19 6.25 -2.91 -0.02 5.17 16 Total: -1.00 -61.49 320.58 0.59 -60.90 By element: Atomic # 1 Polarization: 41.15 SS G_CDS: -0.50 Total: 40.65 kcal Atomic # 6 Polarization: 1.49 SS G_CDS: 7.04 Total: 8.53 kcal Atomic # 7 Polarization: -139.93 SS G_CDS: -7.98 Total: -147.92 kcal Atomic # 14 Polarization: 35.80 SS G_CDS: 2.03 Total: 37.83 kcal Total: -61.49 0.59 -60.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168832986.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.070 kcal (2) G-P(sol) polarization free energy of solvation -61.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds