Wall clock time and date at job start Tue Mar 31 2020 05:30:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30741 * 1 3 3 Si 1.86797 * 120.00092 * 2 1 4 4 H 1.48503 * 109.47357 * 240.00717 * 3 2 1 5 5 H 1.48499 * 109.47038 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47102 * 120.00487 * 3 2 1 7 7 C 1.40026 * 120.00150 * 180.02562 * 2 1 3 8 8 H 1.07989 * 120.00367 * 179.97438 * 7 2 1 9 9 C 1.41071 * 119.99837 * 359.97438 * 7 2 1 10 10 N 1.33628 * 119.16969 * 180.02562 * 9 7 2 11 11 C 1.31629 * 120.79592 * 180.02562 * 10 9 7 12 12 C 1.40133 * 119.13648 * 0.25652 * 11 10 9 13 13 N 1.38699 * 120.76503 * 179.74383 * 12 11 10 14 14 C 1.46500 * 119.99730 * 69.32976 * 13 12 11 15 15 C 1.53000 * 109.47268 * 90.00182 * 14 13 12 16 16 N 1.46896 * 109.47420 * 180.02562 * 15 14 13 17 17 C 1.39539 * 120.00198 * 249.32972 * 13 12 11 18 18 C 1.39407 * 120.49578 * 5.22058 * 17 13 12 19 19 C 1.38473 * 118.34665 * 179.97438 * 18 17 13 20 20 C 1.38298 * 119.24764 * 0.02562 * 19 18 17 21 21 N 1.31874 * 120.95180 * 359.97438 * 20 19 18 22 22 C 1.31799 * 121.80543 * 359.72463 * 21 20 19 23 23 C 1.40140 * 118.47682 * 359.52442 * 12 11 10 24 24 N 1.31629 * 119.13378 * 0.47232 * 23 12 11 25 25 H 0.96998 * 120.00415 * 359.97438 * 1 2 3 26 26 H 1.08006 * 120.43603 * 179.97438 * 11 10 9 27 27 H 1.09001 * 109.47057 * 209.99954 * 14 13 12 28 28 H 1.09001 * 109.47356 * 330.00437 * 14 13 12 29 29 H 1.09001 * 109.46895 * 299.99872 * 15 14 13 30 30 H 1.09001 * 109.46724 * 59.99868 * 15 14 13 31 31 H 1.00900 * 111.00250 * 56.04370 * 16 15 14 32 32 H 1.00900 * 111.00236 * 180.02562 * 16 15 14 33 33 H 1.07995 * 120.82742 * 359.97438 * 18 17 13 34 34 H 1.07989 * 120.37534 * 180.02562 * 19 18 17 35 35 H 1.07998 * 119.52688 * 179.97438 * 20 19 18 36 36 H 1.08001 * 119.68109 * 180.28865 * 22 21 20 37 37 H 1.08000 * 120.43198 * 180.19232 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.0951 1.6965 -1.2126 5 1 1.2764 2.7464 0.0006 6 1 3.0953 1.6963 1.2124 7 6 2.0076 -1.2126 -0.0005 8 1 3.0875 -1.2127 -0.0010 9 6 1.3022 -2.4344 -0.0005 10 7 1.9871 -3.5818 -0.0005 11 6 1.3615 -4.7400 -0.0010 12 6 -0.0397 -4.7586 -0.0071 13 7 -0.7332 -5.9598 -0.0131 14 6 -0.7166 -6.8211 1.1718 15 6 -1.8819 -6.4474 2.0903 16 7 -1.8649 -7.3106 3.2788 17 6 -1.4467 -6.3478 -1.1478 18 6 -1.3821 -5.5914 -2.3171 19 6 -2.1076 -6.0177 -3.4168 20 6 -2.8666 -7.1698 -3.3203 21 7 -2.9069 -7.8636 -2.1995 22 6 -2.2277 -7.4973 -1.1311 23 6 -0.7242 -3.5358 -0.0021 24 7 -0.0340 -2.4150 -0.0015 25 1 -0.4851 0.8400 0.0004 26 1 1.9209 -5.6639 -0.0015 27 1 -0.8151 -7.8625 0.8654 28 1 0.2242 -6.6867 1.7056 29 1 -1.7834 -5.4060 2.3967 30 1 -2.8227 -6.5818 1.5565 31 1 -0.9775 -7.2523 3.7554 32 1 -2.6258 -7.0836 3.9014 33 1 -0.7813 -4.6953 -2.3640 34 1 -2.0811 -5.4569 -4.3393 35 1 -3.4346 -7.5061 -4.1751 36 1 -2.2820 -8.0938 -0.2324 37 1 -1.8040 -3.5133 -0.0034 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168836738.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:08 Heat of formation + Delta-G solvation = 95.099128 kcal Electronic energy + Delta-G solvation = -21824.423000 eV Core-core repulsion = 18601.910785 eV Total energy + Delta-G solvation = -3222.512215 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.16969 -38.97223 -36.93051 -34.46836 -33.75140 -32.03636 -31.72412 -30.51922 -29.33354 -27.45202 -25.48558 -23.42293 -22.98901 -22.60359 -21.84194 -20.50304 -18.07030 -17.38952 -16.70787 -16.31639 -16.11484 -15.52538 -15.27255 -14.84848 -14.63089 -14.22158 -13.78298 -13.60061 -13.27617 -13.08170 -12.87653 -12.53268 -12.45060 -12.03593 -11.56729 -11.48712 -11.37329 -11.17525 -10.90874 -10.50195 -10.32866 -9.73495 -9.63359 -9.36725 -9.22257 -9.08992 -8.77239 -8.19948 -7.70398 -6.95236 -6.62392 -4.92182 1.58317 1.78870 2.30534 2.75347 2.93828 2.96388 2.98558 3.45604 3.72728 4.25236 4.41170 4.70020 4.88068 5.08394 5.22115 5.25805 5.29947 5.52368 5.57027 5.61035 5.66945 5.71265 5.76155 5.90361 5.96256 6.04397 6.09012 6.45465 6.59694 6.61589 6.80912 6.89228 6.99823 7.06879 7.15870 7.32551 7.73793 7.92557 8.06622 8.26090 8.35113 8.41148 8.91386 9.89562 10.04756 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.018507 B = 0.004746 C = 0.004132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.568944 B = 5898.280530 C = 6775.149797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.701 5.701 2 C 0.062 3.938 3 Si 0.922 3.078 4 H -0.261 1.261 5 H -0.275 1.275 6 H -0.261 1.261 7 C -0.383 4.383 8 H 0.096 0.904 9 C 0.381 3.619 10 N -0.587 5.587 11 C 0.174 3.826 12 C -0.142 4.142 13 N -0.531 5.531 14 C 0.128 3.872 15 C 0.041 3.959 16 N -0.849 5.849 17 C 0.180 3.820 18 C -0.143 4.143 19 C -0.125 4.125 20 C 0.019 3.981 21 N -0.451 5.451 22 C 0.013 3.987 23 C 0.171 3.829 24 N -0.500 5.500 25 H 0.279 0.721 26 H 0.128 0.872 27 H 0.079 0.921 28 H 0.072 0.928 29 H 0.033 0.967 30 H 0.073 0.927 31 H 0.339 0.661 32 H 0.342 0.658 33 H 0.132 0.868 34 H 0.127 0.873 35 H 0.145 0.855 36 H 0.150 0.850 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.602 -6.958 0.682 7.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.322 5.322 2 C -0.166 4.166 3 Si 0.745 3.255 4 H -0.185 1.185 5 H -0.199 1.199 6 H -0.186 1.186 7 C -0.417 4.417 8 H 0.114 0.886 9 C 0.147 3.853 10 N -0.306 5.306 11 C -0.001 4.001 12 C -0.244 4.244 13 N -0.234 5.234 14 C 0.004 3.996 15 C -0.091 4.091 16 N -0.379 5.379 17 C 0.074 3.926 18 C -0.173 4.173 19 C -0.145 4.145 20 C -0.141 4.141 21 N -0.159 5.159 22 C -0.150 4.150 23 C -0.007 4.007 24 N -0.217 5.217 25 H 0.091 0.909 26 H 0.145 0.855 27 H 0.097 0.903 28 H 0.091 0.909 29 H 0.051 0.949 30 H 0.091 0.909 31 H 0.151 0.849 32 H 0.154 0.846 33 H 0.150 0.850 34 H 0.145 0.855 35 H 0.162 0.838 36 H 0.168 0.832 37 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -3.741 -7.087 0.367 8.022 hybrid contribution 0.405 1.579 0.520 1.711 sum -3.336 -5.508 0.887 6.501 Atomic orbital electron populations 1.70131 1.07397 1.28787 1.25866 1.26183 0.95110 1.01706 0.93605 0.86134 0.79931 0.79126 0.80317 1.18526 1.19921 1.18573 1.19375 0.95048 0.87780 1.39476 0.88643 1.19907 0.85833 0.90830 0.88699 1.68685 1.40486 0.98090 1.23341 1.22785 0.90252 0.96044 0.91021 1.18590 0.92330 0.85681 1.27806 1.42952 1.50912 1.19481 1.10071 1.21404 0.98008 0.94233 0.85966 1.22246 1.00065 0.94750 0.92006 1.58686 1.08665 1.59288 1.11213 1.19087 0.91917 0.93948 0.87648 1.21225 1.02478 1.01688 0.91907 1.21883 0.96728 0.97278 0.98659 1.22282 1.01554 0.94165 0.96055 1.67416 1.18070 1.31002 0.99391 1.22292 0.98520 0.96230 0.97981 1.23204 0.99039 0.87877 0.90579 1.69407 1.08166 1.25965 1.18141 0.90926 0.85490 0.90283 0.90933 0.94871 0.90865 0.84868 0.84592 0.85040 0.85535 0.83800 0.83246 0.85809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -17.40 11.40 55.55 0.63 -16.76 16 2 C 0.06 1.48 5.50 -17.35 -0.10 1.39 16 3 Si 0.92 17.42 29.56 -169.99 -5.02 12.39 16 4 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 5 H -0.27 -5.02 7.11 56.52 0.40 -4.62 16 6 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 7 C -0.38 -9.86 9.35 -37.84 -0.35 -10.22 16 8 H 0.10 2.35 7.85 -52.49 -0.41 1.94 16 9 C 0.38 10.07 7.35 -158.19 -1.16 8.90 16 10 N -0.59 -14.55 10.34 -12.48 -0.13 -14.68 16 11 C 0.17 3.73 11.07 -16.93 -0.19 3.55 16 12 C -0.14 -2.86 4.13 -83.33 -0.34 -3.20 16 13 N -0.53 -8.90 2.64 -111.13 -0.29 -9.20 16 14 C 0.13 1.78 5.27 -4.04 -0.02 1.76 16 15 C 0.04 0.54 7.10 -3.83 -0.03 0.52 16 16 N -0.85 -9.15 9.62 -10.37 -0.10 -9.25 16 17 C 0.18 3.02 6.47 -83.64 -0.54 2.48 16 18 C -0.14 -2.46 9.17 -39.06 -0.36 -2.81 16 19 C -0.12 -1.85 10.10 -39.47 -0.40 -2.25 16 20 C 0.02 0.27 11.18 -17.51 -0.20 0.08 16 21 N -0.45 -7.29 10.35 -13.05 -0.14 -7.42 16 22 C 0.01 0.20 10.34 -17.29 -0.18 0.02 16 23 C 0.17 3.82 10.28 -16.92 -0.17 3.65 16 24 N -0.50 -12.91 7.83 -12.48 -0.10 -13.01 16 25 H 0.28 6.24 8.29 -40.82 -0.34 5.90 16 26 H 0.13 2.39 8.06 -52.48 -0.42 1.97 16 27 H 0.08 1.02 6.44 -51.93 -0.33 0.69 16 28 H 0.07 1.01 7.91 -51.93 -0.41 0.60 16 29 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.34 3.31 8.99 -39.29 -0.35 2.96 16 32 H 0.34 3.18 9.08 -39.29 -0.36 2.82 16 33 H 0.13 2.53 6.67 -52.49 -0.35 2.18 16 34 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 35 H 0.14 1.68 8.06 -52.49 -0.42 1.25 16 36 H 0.15 2.13 6.29 -52.49 -0.33 1.80 16 37 H 0.12 2.63 8.06 -52.49 -0.42 2.20 16 LS Contribution 320.42 15.07 4.83 4.83 Total: -1.00 -28.13 320.42 -8.58 -36.71 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: -4.22 Total: 12.54 kcal Atomic # 6 Polarization: 7.89 SS G_CDS: -4.04 Total: 3.85 kcal Atomic # 7 Polarization: -70.20 SS G_CDS: -0.12 Total: -70.32 kcal Atomic # 14 Polarization: 17.42 SS G_CDS: -5.02 Total: 12.39 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -28.13 -8.58 -36.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168836738.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.808 kcal (2) G-P(sol) polarization free energy of solvation -28.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds