Wall clock time and date at job start Tue Mar 31 2020 05:23:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35912 * 117.00049 * 2 1 4 4 C 1.39147 * 120.47236 * 0.02562 * 3 2 1 5 5 C 1.38527 * 118.37153 * 179.97438 * 4 3 2 6 6 C 1.38253 * 119.22433 * 0.02562 * 5 4 3 7 7 N 1.31848 * 120.88785 * 359.97438 * 6 5 4 8 8 C 1.31845 * 121.77625 * 0.02562 * 7 6 5 9 9 C 1.50698 * 119.65568 * 179.97438 * 8 7 6 10 10 N 1.46500 * 109.47256 * 270.00183 * 9 8 7 11 11 C 1.38090 * 120.00204 * 180.02562 * 10 9 8 12 12 N 1.32266 * 119.90434 * 359.97438 * 11 10 9 13 13 C 1.31969 * 121.86642 * 179.97438 * 12 11 10 14 14 C 1.38681 * 121.44714 * 359.97438 * 13 12 11 15 15 C 1.38007 * 119.62780 * 359.97438 * 14 13 12 16 16 C 1.41008 * 118.27680 * 359.75372 * 15 14 13 17 17 C 1.41016 * 120.70033 * 180.24064 * 16 15 14 18 18 H 1.08003 * 119.99559 * 154.91744 * 17 16 15 19 19 C 1.39948 * 120.00429 * 334.91906 * 17 16 15 20 20 N 1.30863 * 119.99961 * 343.58576 * 19 17 16 21 21 Si 1.86803 * 119.99986 * 163.58983 * 19 17 16 22 22 H 1.48500 * 109.47069 * 59.99841 * 21 19 17 23 23 H 1.48500 * 109.46864 * 179.97438 * 21 19 17 24 24 H 1.48494 * 109.47319 * 299.99923 * 21 19 17 25 25 H 1.09001 * 109.47130 * 299.99522 * 1 2 3 26 26 H 1.08999 * 109.47686 * 59.99368 * 1 2 3 27 27 H 1.08995 * 109.47236 * 179.97438 * 1 2 3 28 28 H 1.07997 * 120.81393 * 359.95843 * 4 3 2 29 29 H 1.08007 * 120.38792 * 179.97438 * 5 4 3 30 30 H 1.08010 * 119.55850 * 179.72076 * 6 5 4 31 31 H 1.09006 * 109.47092 * 29.99608 * 9 8 7 32 32 H 1.08996 * 109.46991 * 149.99895 * 9 8 7 33 33 H 0.96997 * 119.99676 * 359.97438 * 10 9 8 34 34 H 1.08001 * 119.27679 * 179.97438 * 13 12 11 35 35 H 1.08001 * 120.18272 * 180.02562 * 14 13 12 36 36 H 1.08001 * 120.85767 * 180.02562 * 15 14 13 37 37 H 0.97001 * 120.00258 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2979 2.3842 0.0005 5 6 1.9716 3.5946 0.0011 6 6 3.3541 3.5975 0.0005 7 7 4.0334 2.4675 0.0000 8 6 3.4305 1.2950 -0.0005 9 6 4.2541 0.0330 -0.0017 10 7 4.5205 -0.3750 -1.3833 11 6 5.2620 -1.5121 -1.6367 12 7 5.7313 -2.2311 -0.6306 13 6 6.4436 -3.3243 -0.8282 14 6 6.7364 -3.7759 -2.1063 15 6 6.2759 -3.0724 -3.2007 16 6 5.5112 -1.9096 -2.9738 17 6 5.0109 -1.1547 -4.0546 18 1 4.1323 -0.5404 -3.9233 19 6 5.6526 -1.2014 -5.2974 20 7 6.8713 -1.6697 -5.3873 21 14 4.7697 -0.5951 -6.8279 22 1 4.4158 0.8374 -6.6605 23 1 5.6595 -0.7502 -8.0067 24 1 3.5323 -1.3899 -7.0331 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 0.2184 2.3519 0.0003 29 1 1.4232 4.5251 0.0011 30 1 3.8849 4.5382 -0.0037 31 1 5.1983 0.2149 0.5118 32 1 3.7077 -0.7580 0.5119 33 1 4.1754 0.1531 -2.1200 34 1 6.8065 -3.8795 0.0241 35 1 7.3208 -4.6736 -2.2444 36 1 6.4919 -3.4063 -4.2048 37 1 7.3163 -1.7017 -6.2486 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169202896.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:39 Heat of formation + Delta-G solvation = 35.770627 kcal Electronic energy + Delta-G solvation = -21678.337052 eV Core-core repulsion = 18420.959409 eV Total energy + Delta-G solvation = -3257.377643 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.122 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.70487 -38.35734 -38.10749 -34.84317 -33.87738 -32.21920 -31.02285 -30.30527 -28.68716 -27.53159 -25.86711 -25.04568 -22.88022 -22.21527 -21.13817 -20.41539 -18.13302 -17.17349 -17.09825 -16.80202 -16.01779 -15.75000 -15.25812 -14.71608 -14.44435 -13.98732 -13.81480 -13.58742 -13.40163 -13.17387 -12.72216 -12.59875 -12.13612 -11.86170 -11.73696 -11.52469 -11.40504 -11.26907 -11.23716 -10.86072 -10.51003 -9.79558 -9.70900 -9.48517 -9.23212 -8.86080 -8.40438 -7.98658 -7.79679 -6.72777 -6.40928 -4.15494 1.05957 1.25374 2.81958 3.08569 3.10825 3.14768 3.19120 3.31919 3.70872 3.97202 4.36864 4.59457 4.63281 4.73606 4.81056 4.91947 5.00702 5.05887 5.22625 5.36167 5.60588 5.78865 5.88252 5.96296 6.16569 6.27671 6.45073 6.52339 6.53404 6.85356 6.96425 7.17980 7.19483 7.26002 7.73692 7.89164 8.06302 8.08533 8.35962 8.60022 8.74187 8.86270 9.09330 9.87850 10.27940 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.013877 B = 0.005441 C = 0.004600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.190071 B = 5145.247513 C = 6085.403705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.296 6.296 3 C 0.095 3.905 4 C -0.172 4.172 5 C -0.135 4.135 6 C 0.056 3.944 7 N -0.431 5.431 8 C 0.097 3.903 9 C 0.204 3.796 10 N -0.720 5.720 11 C 0.311 3.689 12 N -0.533 5.533 13 C 0.005 3.995 14 C -0.194 4.194 15 C -0.124 4.124 16 C 0.032 3.968 17 C -0.456 4.456 18 H 0.072 0.928 19 C 0.076 3.924 20 N -0.799 5.799 21 Si 0.905 3.095 22 H -0.267 1.267 23 H -0.279 1.279 24 H -0.265 1.265 25 H 0.053 0.947 26 H 0.055 0.945 27 H 0.103 0.897 28 H 0.138 0.862 29 H 0.135 0.865 30 H 0.157 0.843 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.401 0.599 34 H 0.117 0.883 35 H 0.094 0.906 36 H 0.124 0.876 37 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.787 7.542 6.832 15.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.207 6.207 3 C 0.046 3.954 4 C -0.198 4.198 5 C -0.155 4.155 6 C -0.101 4.101 7 N -0.140 5.140 8 C -0.044 4.044 9 C 0.078 3.922 10 N -0.359 5.359 11 C 0.074 3.926 12 N -0.251 5.251 13 C -0.149 4.149 14 C -0.216 4.216 15 C -0.151 4.151 16 C 0.025 3.975 17 C -0.488 4.488 18 H 0.090 0.910 19 C -0.140 4.140 20 N -0.426 5.426 21 Si 0.730 3.270 22 H -0.192 1.192 23 H -0.204 1.204 24 H -0.190 1.190 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.121 0.879 28 H 0.155 0.845 29 H 0.153 0.847 30 H 0.174 0.826 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.238 0.762 34 H 0.135 0.865 35 H 0.112 0.888 36 H 0.142 0.858 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -10.747 7.544 7.709 15.226 hybrid contribution -1.484 0.471 -1.945 2.491 sum -12.232 8.015 5.764 15.719 Atomic orbital electron populations 1.23109 0.78583 1.04362 1.00977 1.86256 1.21074 1.25492 1.87856 1.20002 0.93292 0.85207 0.96931 1.21674 1.00636 0.92203 1.05301 1.21964 0.95795 0.98078 0.99664 1.22677 0.91376 0.96566 0.99453 1.67634 1.39951 0.97479 1.08974 1.21105 0.88351 0.94681 1.00220 1.19580 0.97225 0.88857 0.86503 1.43521 1.60286 1.27334 1.04784 1.18429 0.96275 0.88638 0.89304 1.66550 1.15020 1.08574 1.34965 1.21356 1.02912 0.95762 0.94843 1.21395 1.04684 1.01204 0.94359 1.21319 1.01578 0.94274 0.97905 1.17890 0.95703 0.93475 0.90431 1.19076 1.11044 1.24612 0.94031 0.91000 1.25777 0.94020 0.93873 1.00371 1.69805 1.10180 1.35878 1.26693 0.86422 0.80227 0.79955 0.80406 1.19217 1.20387 1.19016 0.92835 0.92647 0.87883 0.84454 0.84716 0.82554 0.91454 0.91227 0.76236 0.86527 0.88821 0.85809 0.90989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.83 101.05 0.99 1.23 16 2 O -0.30 -4.31 9.55 -19.46 -0.19 -4.49 16 3 C 0.09 1.39 6.67 -39.07 -0.26 1.13 16 4 C -0.17 -1.97 9.14 -39.14 -0.36 -2.33 16 5 C -0.13 -1.43 10.11 -39.47 -0.40 -1.83 16 6 C 0.06 0.72 11.18 -17.54 -0.20 0.52 16 7 N -0.43 -7.15 10.27 -9.35 -0.10 -7.25 16 8 C 0.10 1.65 6.16 -82.42 -0.51 1.15 16 9 C 0.20 4.03 5.75 -5.19 -0.03 4.00 16 10 N -0.72 -16.30 5.60 -61.15 -0.34 -16.64 16 11 C 0.31 8.03 7.52 -155.03 -1.17 6.86 16 12 N -0.53 -13.52 9.54 -11.87 -0.11 -13.64 16 13 C 0.00 0.11 11.17 -17.33 -0.19 -0.08 16 14 C -0.19 -4.72 10.08 -39.50 -0.40 -5.11 16 15 C -0.12 -3.32 8.79 -38.62 -0.34 -3.66 16 16 C 0.03 0.87 5.60 -106.47 -0.60 0.28 16 17 C -0.46 -12.08 8.51 -37.89 -0.32 -12.40 16 18 H 0.07 1.82 6.70 -52.48 -0.35 1.47 16 19 C 0.08 1.93 5.19 -17.32 -0.09 1.84 16 20 N -0.80 -20.99 10.95 55.55 0.61 -20.38 16 21 Si 0.91 18.94 29.59 -169.99 -5.03 13.91 16 22 H -0.27 -5.54 7.11 56.52 0.40 -5.13 16 23 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 24 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 25 H 0.05 0.40 7.70 -51.93 -0.40 0.00 16 26 H 0.05 0.46 7.70 -51.93 -0.40 0.06 16 27 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.14 1.16 6.45 -52.49 -0.34 0.82 16 29 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 30 H 0.16 1.53 8.06 -52.48 -0.42 1.10 16 31 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 32 H 0.07 1.39 7.52 -51.93 -0.39 1.00 16 33 H 0.40 9.05 6.67 -40.82 -0.27 8.77 16 34 H 0.12 2.44 8.06 -52.49 -0.42 2.01 16 35 H 0.09 2.01 8.06 -52.49 -0.42 1.58 16 36 H 0.12 3.37 6.26 -52.49 -0.33 3.04 16 37 H 0.28 6.72 8.30 -40.82 -0.34 6.39 16 LS Contribution 318.31 15.07 4.80 4.80 Total: -1.00 -31.09 318.31 -8.38 -39.46 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: -4.15 Total: 12.63 kcal Atomic # 6 Polarization: -4.55 SS G_CDS: -3.86 Total: -8.41 kcal Atomic # 7 Polarization: -57.96 SS G_CDS: 0.06 Total: -57.91 kcal Atomic # 8 Polarization: -4.31 SS G_CDS: -0.19 Total: -4.49 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.03 Total: 13.91 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -31.09 -8.38 -39.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169202896.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.235 kcal (2) G-P(sol) polarization free energy of solvation -31.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds