Wall clock time and date at job start Tue Mar 31 2020 05:23:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35912 * 117.00049 * 2 1 4 4 C 1.39147 * 120.47236 * 0.02562 * 3 2 1 5 5 C 1.38527 * 118.37153 * 179.97438 * 4 3 2 6 6 C 1.38253 * 119.22433 * 0.02562 * 5 4 3 7 7 N 1.31848 * 120.88785 * 359.97438 * 6 5 4 8 8 C 1.31845 * 121.77625 * 0.02562 * 7 6 5 9 9 C 1.50698 * 119.65568 * 179.97438 * 8 7 6 10 10 N 1.46500 * 109.47256 * 270.00183 * 9 8 7 11 11 C 1.38090 * 120.00204 * 180.02562 * 10 9 8 12 12 N 1.32266 * 119.90434 * 359.97438 * 11 10 9 13 13 C 1.31969 * 121.86642 * 179.97438 * 12 11 10 14 14 C 1.38681 * 121.44714 * 359.97438 * 13 12 11 15 15 C 1.38007 * 119.62780 * 359.97438 * 14 13 12 16 16 C 1.41008 * 118.27680 * 359.75372 * 15 14 13 17 17 C 1.41016 * 120.70033 * 180.24064 * 16 15 14 18 18 H 1.08003 * 119.99559 * 154.91744 * 17 16 15 19 19 C 1.39948 * 120.00429 * 334.91906 * 17 16 15 20 20 N 1.30863 * 119.99961 * 343.58576 * 19 17 16 21 21 Si 1.86803 * 119.99986 * 163.58983 * 19 17 16 22 22 H 1.48500 * 109.47069 * 59.99841 * 21 19 17 23 23 H 1.48500 * 109.46864 * 179.97438 * 21 19 17 24 24 H 1.48494 * 109.47319 * 299.99923 * 21 19 17 25 25 H 1.09001 * 109.47130 * 299.99522 * 1 2 3 26 26 H 1.08999 * 109.47686 * 59.99368 * 1 2 3 27 27 H 1.08995 * 109.47236 * 179.97438 * 1 2 3 28 28 H 1.07997 * 120.81393 * 359.95843 * 4 3 2 29 29 H 1.08007 * 120.38792 * 179.97438 * 5 4 3 30 30 H 1.08010 * 119.55850 * 179.72076 * 6 5 4 31 31 H 1.09006 * 109.47092 * 29.99608 * 9 8 7 32 32 H 1.08996 * 109.46991 * 149.99895 * 9 8 7 33 33 H 0.96997 * 119.99676 * 359.97438 * 10 9 8 34 34 H 1.08001 * 119.27679 * 179.97438 * 13 12 11 35 35 H 1.08001 * 120.18272 * 180.02562 * 14 13 12 36 36 H 1.08001 * 120.85767 * 180.02562 * 15 14 13 37 37 H 0.97001 * 120.00258 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2979 2.3842 0.0005 5 6 1.9716 3.5946 0.0011 6 6 3.3541 3.5975 0.0005 7 7 4.0334 2.4675 0.0000 8 6 3.4305 1.2950 -0.0005 9 6 4.2541 0.0330 -0.0017 10 7 4.5205 -0.3750 -1.3833 11 6 5.2620 -1.5121 -1.6367 12 7 5.7313 -2.2311 -0.6306 13 6 6.4436 -3.3243 -0.8282 14 6 6.7364 -3.7759 -2.1063 15 6 6.2759 -3.0724 -3.2007 16 6 5.5112 -1.9096 -2.9738 17 6 5.0109 -1.1547 -4.0546 18 1 4.1323 -0.5404 -3.9233 19 6 5.6526 -1.2014 -5.2974 20 7 6.8713 -1.6697 -5.3873 21 14 4.7697 -0.5951 -6.8279 22 1 4.4158 0.8374 -6.6605 23 1 5.6595 -0.7502 -8.0067 24 1 3.5323 -1.3899 -7.0331 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 0.2184 2.3519 0.0003 29 1 1.4232 4.5251 0.0011 30 1 3.8849 4.5382 -0.0037 31 1 5.1983 0.2149 0.5118 32 1 3.7077 -0.7580 0.5119 33 1 4.1754 0.1531 -2.1200 34 1 6.8065 -3.8795 0.0241 35 1 7.3208 -4.6736 -2.2444 36 1 6.4919 -3.4063 -4.2048 37 1 7.3163 -1.7017 -6.2486 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169202896.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:39 Heat of formation + Delta-G solvation = 15.765835 kcal Electronic energy + Delta-G solvation = -21679.204525 eV Core-core repulsion = 18420.959409 eV Total energy + Delta-G solvation = -3258.245116 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.122 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.73717 -40.26338 -39.11750 -36.48905 -35.82707 -33.38603 -32.30612 -32.20164 -30.34212 -28.34139 -27.54383 -26.80908 -23.83786 -23.70781 -22.86525 -22.25354 -19.15108 -19.09639 -18.46021 -18.13137 -17.35719 -17.01798 -16.73457 -16.33573 -15.66710 -15.39126 -15.16624 -15.03607 -14.79620 -14.61708 -14.25035 -13.93800 -13.74870 -13.53179 -13.24604 -13.10990 -13.01302 -12.66938 -12.35674 -12.28464 -12.19199 -11.64539 -11.13673 -10.74601 -10.74217 -10.51672 -10.00448 -9.81398 -9.38965 -8.64707 -8.31285 -6.15600 0.03829 0.28985 0.94193 1.23173 1.37590 1.48419 1.53723 2.21515 2.25879 2.55766 2.82524 3.07411 3.32238 3.62604 3.80681 3.84141 4.07256 4.29346 4.32273 4.34946 4.37506 4.53167 4.65002 4.66901 4.70589 4.81523 4.91452 5.01903 5.06557 5.13591 5.22412 5.32709 5.50782 5.78664 5.91391 6.11494 6.26010 6.40348 6.74285 6.79025 6.89032 7.02072 7.14502 7.92522 8.38952 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.013877 B = 0.005441 C = 0.004600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.190071 B = 5145.247513 C = 6085.403705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.328 6.328 3 C 0.087 3.913 4 C -0.164 4.164 5 C -0.113 4.113 6 C 0.046 3.954 7 N -0.468 5.468 8 C 0.058 3.942 9 C 0.216 3.784 10 N -0.714 5.714 11 C 0.299 3.701 12 N -0.546 5.546 13 C 0.002 3.998 14 C -0.198 4.198 15 C -0.146 4.146 16 C 0.000 4.000 17 C -0.482 4.482 18 H 0.073 0.927 19 C 0.035 3.965 20 N -0.831 5.831 21 Si 0.980 3.020 22 H -0.261 1.261 23 H -0.269 1.269 24 H -0.261 1.261 25 H 0.077 0.923 26 H 0.068 0.932 27 H 0.111 0.889 28 H 0.175 0.825 29 H 0.182 0.818 30 H 0.184 0.816 31 H 0.045 0.955 32 H 0.059 0.941 33 H 0.399 0.601 34 H 0.151 0.849 35 H 0.123 0.877 36 H 0.112 0.888 37 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.005 9.382 6.662 18.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.240 6.240 3 C 0.039 3.961 4 C -0.191 4.191 5 C -0.133 4.133 6 C -0.113 4.113 7 N -0.178 5.178 8 C -0.080 4.080 9 C 0.091 3.909 10 N -0.353 5.353 11 C 0.060 3.940 12 N -0.265 5.265 13 C -0.151 4.151 14 C -0.221 4.221 15 C -0.173 4.173 16 C -0.007 4.007 17 C -0.513 4.513 18 H 0.092 0.908 19 C -0.179 4.179 20 N -0.458 5.458 21 Si 0.801 3.199 22 H -0.186 1.186 23 H -0.193 1.193 24 H -0.185 1.185 25 H 0.096 0.904 26 H 0.087 0.913 27 H 0.129 0.871 28 H 0.192 0.808 29 H 0.199 0.801 30 H 0.201 0.799 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.235 0.765 34 H 0.168 0.832 35 H 0.140 0.860 36 H 0.130 0.870 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -12.975 9.373 7.566 17.705 hybrid contribution -0.831 -0.049 -1.786 1.971 sum -13.806 9.324 5.779 17.633 Atomic orbital electron populations 1.23426 0.76074 1.05658 1.02744 1.86208 1.23812 1.26069 1.87944 1.20029 0.92648 0.86497 0.96973 1.22116 1.02322 0.91084 1.03542 1.22472 0.94998 0.99610 0.96194 1.23265 0.92931 0.96209 0.98850 1.67485 1.41683 0.98372 1.10235 1.20597 0.89320 0.93723 1.04406 1.19380 0.96574 0.90596 0.84390 1.43624 1.59297 1.26273 1.06075 1.18708 0.96527 0.89517 0.89225 1.66662 1.15658 1.09235 1.34905 1.21964 1.01840 0.95335 0.95981 1.21661 1.04622 1.01946 0.93842 1.21368 1.02802 0.94976 0.98130 1.18258 0.96709 0.94262 0.91457 1.19297 1.11572 1.25428 0.95023 0.90848 1.26653 0.94455 0.93705 1.03125 1.69869 1.11451 1.36581 1.27858 0.85291 0.78963 0.79477 0.76204 1.18557 1.19311 1.18511 0.90438 0.91296 0.87074 0.80810 0.80062 0.79907 0.93663 0.92264 0.76544 0.83165 0.85952 0.87043 0.90306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.83 113.37 1.11 1.37 16 2 O -0.33 -9.47 9.55 -92.56 -0.88 -10.35 16 3 C 0.09 2.51 6.67 22.60 0.15 2.66 16 4 C -0.16 -3.23 9.14 22.56 0.21 -3.02 16 5 C -0.11 -1.95 10.11 22.34 0.23 -1.72 16 6 C 0.05 1.06 11.18 84.69 0.95 2.01 16 7 N -0.47 -15.62 10.27 -183.50 -1.88 -17.50 16 8 C 0.06 2.02 6.16 42.67 0.26 2.28 16 9 C 0.22 9.02 5.75 85.63 0.49 9.51 16 10 N -0.71 -33.97 5.60 -347.38 -1.95 -35.92 16 11 C 0.30 16.03 7.52 134.05 1.01 17.04 16 12 N -0.55 -28.42 9.54 -191.46 -1.83 -30.25 16 13 C 0.00 0.10 11.17 84.78 0.95 1.04 16 14 C -0.20 -9.72 10.08 22.32 0.22 -9.49 16 15 C -0.15 -8.06 8.79 22.89 0.20 -7.85 16 16 C 0.00 0.01 5.60 -21.06 -0.12 -0.10 16 17 C -0.48 -26.35 8.51 23.37 0.20 -26.15 16 18 H 0.07 3.84 6.70 -2.91 -0.02 3.82 16 19 C 0.03 1.77 5.19 85.25 0.44 2.22 16 20 N -0.83 -44.55 10.95 21.83 0.24 -44.31 16 21 Si 0.98 38.91 29.59 68.60 2.03 40.94 16 22 H -0.26 -10.04 7.11 99.48 0.71 -9.34 16 23 H -0.27 -10.14 7.11 99.48 0.71 -9.43 16 24 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 25 H 0.08 0.91 7.70 -2.39 -0.02 0.89 16 26 H 0.07 0.96 7.70 -2.39 -0.02 0.94 16 27 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.17 2.07 6.45 -2.91 -0.02 2.05 16 29 H 0.18 1.44 8.06 -2.91 -0.02 1.42 16 30 H 0.18 3.06 8.06 -2.91 -0.02 3.04 16 31 H 0.05 2.03 8.14 -2.38 -0.02 2.01 16 32 H 0.06 2.53 7.52 -2.39 -0.02 2.51 16 33 H 0.40 18.90 6.67 -92.71 -0.62 18.28 16 34 H 0.15 6.08 8.06 -2.91 -0.02 6.05 16 35 H 0.12 5.15 8.06 -2.91 -0.02 5.12 16 36 H 0.11 6.31 6.26 -2.91 -0.02 6.29 16 37 H 0.29 13.96 8.30 -92.71 -0.77 13.19 16 Total: -1.00 -71.04 318.31 2.52 -68.52 By element: Atomic # 1 Polarization: 38.60 SS G_CDS: 0.49 Total: 39.09 kcal Atomic # 6 Polarization: -16.52 SS G_CDS: 6.30 Total: -10.22 kcal Atomic # 7 Polarization: -122.56 SS G_CDS: -5.42 Total: -127.98 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: -0.88 Total: -10.35 kcal Atomic # 14 Polarization: 38.91 SS G_CDS: 2.03 Total: 40.94 kcal Total: -71.04 2.52 -68.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169202896.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.284 kcal (2) G-P(sol) polarization free energy of solvation -71.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds