Wall clock time and date at job start Tue Mar 31 2020 05:23:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35917 * 117.00198 * 2 1 4 4 C 1.39144 * 120.46983 * 0.25175 * 3 2 1 5 5 C 1.38534 * 118.37263 * 180.26132 * 4 3 2 6 6 C 1.38257 * 119.22079 * 359.75249 * 5 4 3 7 7 N 1.31852 * 120.88523 * 359.97438 * 6 5 4 8 8 C 1.31838 * 121.78014 * 0.02562 * 7 6 5 9 9 C 1.50700 * 119.65404 * 179.97438 * 8 7 6 10 10 N 1.46498 * 109.47237 * 90.00168 * 9 8 7 11 11 C 1.38372 * 120.00173 * 179.97438 * 10 9 8 12 12 C 1.39706 * 119.42934 * 359.97438 * 11 10 9 13 13 C 1.36558 * 119.49298 * 179.97438 * 12 11 10 14 14 C 1.41323 * 118.40974 * 0.02562 * 13 12 11 15 15 C 1.41203 * 120.57238 * 179.97438 * 14 13 12 16 16 H 1.08006 * 119.99598 * 155.71393 * 15 14 13 17 17 C 1.39865 * 120.00252 * 335.72229 * 15 14 13 18 18 N 1.30901 * 119.99687 * 343.32236 * 17 15 14 19 19 Si 1.86797 * 120.00364 * 163.32546 * 17 15 14 20 20 H 1.48509 * 109.46947 * 89.99712 * 19 17 15 21 21 H 1.48494 * 109.47442 * 209.99678 * 19 17 15 22 22 H 1.48502 * 109.47233 * 329.99863 * 19 17 15 23 23 C 1.40752 * 118.85733 * 359.97438 * 14 13 12 24 24 N 1.31490 * 120.37144 * 359.74835 * 23 14 13 25 25 H 1.09001 * 109.46900 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47299 * 299.99801 * 1 2 3 27 27 H 1.09001 * 109.47383 * 59.99548 * 1 2 3 28 28 H 1.08002 * 120.81332 * 0.02562 * 4 3 2 29 29 H 1.07998 * 120.39205 * 179.72959 * 5 4 3 30 30 H 1.08001 * 119.55656 * 179.97438 * 6 5 4 31 31 H 1.08999 * 109.47115 * 329.99703 * 9 8 7 32 32 H 1.09008 * 109.47034 * 210.00081 * 9 8 7 33 33 H 0.97001 * 119.99730 * 359.97438 * 10 9 8 34 34 H 1.08000 * 120.25490 * 359.95489 * 12 11 10 35 35 H 1.07998 * 120.79769 * 180.02562 * 13 12 11 36 36 H 0.96996 * 120.00193 * 180.02562 * 18 17 15 37 37 H 1.08002 * 119.81371 * 180.02562 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2978 2.3842 0.0053 5 6 1.9715 3.5946 -0.0005 6 6 3.3541 3.5976 -0.0060 7 7 4.0333 2.4675 -0.0053 8 6 3.4305 1.2951 0.0001 9 6 4.2542 0.0331 0.0000 10 7 4.5266 -0.3723 1.3812 11 6 5.2708 -1.5112 1.6340 12 6 5.7561 -2.2658 0.5631 13 6 6.4910 -3.3897 0.8111 14 6 6.7348 -3.7506 2.1556 15 6 7.4888 -4.9039 2.4643 16 1 8.0012 -4.9763 3.4122 17 6 7.5721 -5.9524 1.5424 18 7 6.7150 -6.0260 0.5557 19 14 8.9062 -7.2478 1.7191 20 1 8.4060 -8.3613 2.5650 21 1 9.2699 -7.7702 0.3775 22 1 10.1033 -6.6419 2.3556 23 6 6.2132 -2.9405 3.1817 24 7 5.5158 -1.8647 2.8898 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 0.2183 2.3518 0.0098 29 1 1.4232 4.5251 -0.0011 30 1 3.8848 4.5382 -0.0110 31 1 5.1960 0.2140 -0.5181 32 1 3.7054 -0.7590 -0.5096 33 1 4.1853 0.1576 2.1185 34 1 5.5512 -1.9629 -0.4531 35 1 6.8768 -3.9885 -0.0007 36 1 6.7725 -6.7533 -0.0835 37 1 6.3905 -3.2017 4.2145 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169203478.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:41 Heat of formation + Delta-G solvation = 16.716733 kcal Electronic energy + Delta-G solvation = -21101.819066 eV Core-core repulsion = 17843.615184 eV Total energy + Delta-G solvation = -3258.203882 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.122 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.76447 -40.34049 -39.13725 -36.95549 -35.45538 -33.30223 -32.51606 -32.11948 -30.67016 -28.38844 -27.86281 -26.06172 -24.00484 -23.85296 -23.09015 -22.26542 -19.17653 -19.10519 -18.36988 -18.14833 -17.43696 -16.96026 -16.74856 -16.53514 -15.51463 -15.42196 -15.21752 -15.07632 -14.94591 -14.54344 -14.35759 -13.90136 -13.74233 -13.53843 -13.45033 -13.05040 -12.99572 -12.74784 -12.37225 -12.28801 -12.22380 -11.66112 -11.21460 -10.74959 -10.58213 -10.45876 -10.16548 -9.92880 -9.43162 -8.66249 -8.40754 -6.12047 0.01172 0.27210 0.90106 1.13016 1.42800 1.54193 1.60184 2.23811 2.26444 2.46838 2.83492 2.98552 3.28302 3.59911 3.79642 3.81563 4.06071 4.18355 4.27191 4.32228 4.36035 4.48971 4.58415 4.64643 4.69686 4.76660 4.77933 4.96180 5.04281 5.10967 5.29468 5.42009 5.49076 5.56761 5.86841 5.99219 6.23627 6.48275 6.58583 6.82504 6.93731 6.98730 7.10727 7.83308 8.41844 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.031718 B = 0.003275 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.570890 B = 8548.346506 C = 8870.628493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.328 6.328 3 C 0.087 3.913 4 C -0.165 4.165 5 C -0.112 4.112 6 C 0.047 3.953 7 N -0.464 5.464 8 C 0.060 3.940 9 C 0.207 3.793 10 N -0.725 5.725 11 C 0.288 3.712 12 C -0.207 4.207 13 C -0.106 4.106 14 C 0.000 4.000 15 C -0.491 4.491 16 H 0.078 0.922 17 C 0.033 3.967 18 N -0.837 5.837 19 Si 0.984 3.016 20 H -0.264 1.264 21 H -0.268 1.268 22 H -0.260 1.260 23 C -0.001 4.001 24 N -0.538 5.538 25 H 0.109 0.891 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.172 0.828 29 H 0.181 0.819 30 H 0.185 0.815 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.390 0.610 34 H 0.119 0.881 35 H 0.118 0.882 36 H 0.286 0.714 37 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.043 15.217 -5.360 20.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.240 6.240 3 C 0.038 3.962 4 C -0.192 4.192 5 C -0.132 4.132 6 C -0.111 4.111 7 N -0.174 5.174 8 C -0.078 4.078 9 C 0.081 3.919 10 N -0.363 5.363 11 C 0.054 3.946 12 C -0.231 4.231 13 C -0.133 4.133 14 C -0.005 4.005 15 C -0.522 4.522 16 H 0.097 0.903 17 C -0.180 4.180 18 N -0.465 5.465 19 Si 0.805 3.195 20 H -0.188 1.188 21 H -0.193 1.193 22 H -0.184 1.184 23 C -0.158 4.158 24 N -0.254 5.254 25 H 0.128 0.872 26 H 0.088 0.912 27 H 0.095 0.905 28 H 0.190 0.810 29 H 0.198 0.802 30 H 0.202 0.798 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.223 0.777 34 H 0.137 0.863 35 H 0.136 0.864 36 H 0.097 0.903 37 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -12.446 15.358 -5.093 20.413 hybrid contribution -0.349 -1.037 -0.352 1.150 sum -12.795 14.320 -5.445 19.961 Atomic orbital electron populations 1.23417 0.76089 1.05602 1.02768 1.86203 1.23783 1.26120 1.87921 1.20064 0.92789 0.86424 0.96882 1.22118 1.02330 0.91182 1.03542 1.22480 0.95117 0.99551 0.96005 1.23259 0.92812 0.96271 0.98775 1.67479 1.41488 0.98255 1.10138 1.20441 0.89025 0.93609 1.04761 1.19627 0.97313 0.91241 0.83675 1.43524 1.60260 1.26447 1.06077 1.18016 0.97215 0.90406 0.88985 1.20996 1.05573 0.98471 0.98044 1.21318 0.99395 0.95140 0.97403 1.18642 0.94497 0.94997 0.92392 1.19559 1.28492 1.00561 1.03594 0.90346 1.26708 0.97188 1.00596 0.93554 1.69871 1.31893 1.31251 1.13472 0.85178 0.78355 0.77281 0.78692 1.18835 1.19255 1.18375 1.22397 1.00997 0.94009 0.98381 1.66590 1.19037 1.19264 1.20511 0.87243 0.91181 0.90507 0.81025 0.80211 0.79808 0.92307 0.91773 0.77698 0.86317 0.86432 0.90312 0.84589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.83 113.37 1.11 1.34 16 2 O -0.33 -8.40 9.54 -92.62 -0.88 -9.29 16 3 C 0.09 2.17 6.67 22.60 0.15 2.32 16 4 C -0.17 -2.71 9.14 22.56 0.21 -2.50 16 5 C -0.11 -1.54 10.11 22.34 0.23 -1.32 16 6 C 0.05 0.90 11.18 84.69 0.95 1.85 16 7 N -0.46 -13.08 10.27 -183.50 -1.88 -14.97 16 8 C 0.06 1.79 6.16 42.67 0.26 2.05 16 9 C 0.21 7.29 4.94 85.63 0.42 7.71 16 10 N -0.72 -29.79 5.70 -348.59 -1.99 -31.77 16 11 C 0.29 14.19 7.64 133.31 1.02 15.21 16 12 C -0.21 -10.35 9.24 22.23 0.21 -10.14 16 13 C -0.11 -5.81 8.74 22.64 0.20 -5.61 16 14 C 0.00 -0.01 5.59 -21.18 -0.12 -0.12 16 15 C -0.49 -27.16 9.07 23.39 0.21 -26.95 16 16 H 0.08 4.14 7.90 -2.91 -0.02 4.12 16 17 C 0.03 1.68 5.19 85.23 0.44 2.12 16 18 N -0.84 -44.71 10.91 21.82 0.24 -44.47 16 19 Si 0.98 39.09 29.59 68.60 2.03 41.12 16 20 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 21 H -0.27 -10.13 7.11 99.48 0.71 -9.42 16 22 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 23 C 0.00 -0.04 10.97 85.36 0.94 0.90 16 24 N -0.54 -28.23 10.37 -191.20 -1.98 -30.22 16 25 H 0.11 1.44 8.14 -2.39 -0.02 1.43 16 26 H 0.07 0.81 7.69 -2.39 -0.02 0.79 16 27 H 0.08 0.76 7.71 -2.39 -0.02 0.74 16 28 H 0.17 1.60 6.45 -2.91 -0.02 1.58 16 29 H 0.18 0.91 8.06 -2.91 -0.02 0.89 16 30 H 0.18 2.34 8.06 -2.91 -0.02 2.32 16 31 H 0.06 2.14 7.91 -2.39 -0.02 2.12 16 32 H 0.06 2.31 7.27 -2.38 -0.02 2.29 16 33 H 0.39 15.63 8.58 -92.71 -0.80 14.83 16 34 H 0.12 5.29 6.64 -2.91 -0.02 5.27 16 35 H 0.12 6.60 6.20 -2.91 -0.02 6.59 16 36 H 0.29 13.82 8.30 -92.71 -0.77 13.06 16 37 H 0.14 6.83 8.06 -2.91 -0.02 6.80 16 Total: -1.00 -70.25 319.12 2.07 -68.18 By element: Atomic # 1 Polarization: 34.25 SS G_CDS: 0.31 Total: 34.57 kcal Atomic # 6 Polarization: -19.38 SS G_CDS: 6.22 Total: -13.16 kcal Atomic # 7 Polarization: -115.81 SS G_CDS: -5.62 Total: -121.42 kcal Atomic # 8 Polarization: -8.40 SS G_CDS: -0.88 Total: -9.29 kcal Atomic # 14 Polarization: 39.09 SS G_CDS: 2.03 Total: 41.12 kcal Total: -70.25 2.07 -68.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169203478.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.895 kcal (2) G-P(sol) polarization free energy of solvation -70.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds