Wall clock time and date at job start Tue Mar 31 2020 05:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42890 * 1 3 3 C 1.35912 * 117.00348 * 2 1 4 4 C 1.39150 * 120.47127 * 0.25353 * 3 2 1 5 5 C 1.38531 * 118.37536 * 180.26508 * 4 3 2 6 6 C 1.38257 * 119.21963 * 359.75025 * 5 4 3 7 7 N 1.31843 * 120.88806 * 359.97438 * 6 5 4 8 8 C 1.31847 * 121.78186 * 0.02937 * 7 6 5 9 9 C 1.50695 * 119.65589 * 179.97438 * 8 7 6 10 10 N 1.46505 * 109.47255 * 90.00219 * 9 8 7 11 11 C 1.39720 * 120.00005 * 180.27424 * 10 9 8 12 12 C 1.39330 * 120.36266 * 359.43936 * 11 10 9 13 13 N 1.31991 * 121.20623 * 179.77130 * 12 11 10 14 14 C 1.31497 * 122.05555 * 0.50002 * 13 12 11 15 15 C 1.40759 * 120.56559 * 359.77109 * 14 13 12 16 16 C 1.41426 * 120.62483 * 179.97438 * 15 14 13 17 17 H 1.08005 * 119.99878 * 335.80506 * 16 15 14 18 18 C 1.39923 * 120.00235 * 155.80701 * 16 15 14 19 19 N 1.30829 * 120.00428 * 342.93382 * 18 16 15 20 20 Si 1.86804 * 119.99926 * 162.93765 * 18 16 15 21 21 H 1.48500 * 109.47326 * 90.00028 * 20 18 16 22 22 H 1.48502 * 109.46787 * 209.99921 * 20 18 16 23 23 H 1.48491 * 109.47162 * 329.99887 * 20 18 16 24 24 C 1.38651 * 120.36154 * 179.72206 * 11 10 9 25 25 H 1.09003 * 109.47356 * 59.99549 * 1 2 3 26 26 H 1.09000 * 109.47527 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47319 * 299.99959 * 1 2 3 28 28 H 1.07999 * 120.81082 * 0.02562 * 4 3 2 29 29 H 1.07993 * 120.39379 * 179.73214 * 5 4 3 30 30 H 1.07997 * 119.55640 * 180.02562 * 6 5 4 31 31 H 1.08994 * 109.47516 * 329.99550 * 9 8 7 32 32 H 1.09001 * 109.46891 * 209.99230 * 9 8 7 33 33 H 0.96998 * 119.99775 * 359.97438 * 10 9 8 34 34 H 1.07996 * 119.40312 * 0.02562 * 12 11 10 35 35 H 1.08008 * 119.71721 * 179.75282 * 14 13 12 36 36 H 0.96998 * 120.00576 * 179.97438 * 19 18 16 37 37 H 1.08001 * 120.93071 * 359.95253 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2978 2.3842 0.0053 5 6 1.9715 3.5947 -0.0006 6 6 3.3541 3.5976 -0.0061 7 7 4.0333 2.4676 -0.0054 8 6 3.4305 1.2950 0.0000 9 6 4.2542 0.0331 0.0000 10 7 4.5266 -0.3723 1.3812 11 6 5.2834 -1.5188 1.6364 12 6 5.7728 -2.2885 0.5832 13 7 6.4931 -3.3721 0.8051 14 6 6.7766 -3.7847 2.0210 15 6 6.3181 -3.0710 3.1442 16 6 6.6218 -3.5139 4.4525 17 1 6.8488 -4.5547 4.6312 18 6 6.6282 -2.6040 5.5155 19 7 6.6878 -1.3192 5.2764 20 14 6.5517 -3.2239 7.2760 21 1 7.9298 -3.4454 7.7832 22 1 5.8673 -2.2167 8.1260 23 1 5.7973 -4.5022 7.3184 24 6 5.5506 -1.9062 2.9406 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 0.2183 2.3519 0.0099 29 1 1.4233 4.5251 -0.0011 30 1 3.8848 4.5381 -0.0103 31 1 5.1959 0.2139 -0.5181 32 1 3.7054 -0.7590 -0.5095 33 1 4.1853 0.1576 2.1184 34 1 5.5624 -1.9910 -0.4335 35 1 7.3660 -4.6792 2.1590 36 1 6.6918 -0.6884 6.0133 37 1 5.1812 -1.3315 3.7771 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169210060.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:46 Heat of formation + Delta-G solvation = 29.816698 kcal Electronic energy + Delta-G solvation = -21304.244344 eV Core-core repulsion = 18046.608519 eV Total energy + Delta-G solvation = -3257.635825 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.122 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.86399 -38.35080 -38.20746 -35.32024 -33.85390 -32.43824 -31.23186 -30.15778 -28.46494 -27.63880 -25.73629 -25.25515 -23.02745 -22.37825 -21.46756 -20.43653 -18.27528 -17.25793 -17.21003 -16.65686 -16.06660 -15.57269 -15.27000 -14.80579 -14.70594 -14.57432 -14.00534 -13.71866 -13.46251 -13.18343 -12.94612 -12.78598 -12.23157 -11.96615 -11.65819 -11.57887 -11.44487 -11.35535 -11.10440 -10.86955 -10.49997 -10.00995 -9.79224 -9.65519 -9.38427 -9.23124 -8.52262 -7.96257 -7.65722 -6.76066 -6.27569 -4.38345 0.90179 1.10528 2.81826 3.00480 3.07697 3.12313 3.21733 3.32834 3.54627 3.93935 4.18169 4.44009 4.49278 4.58679 4.74544 4.78581 4.89327 4.92792 5.08890 5.25668 5.40786 5.64809 5.82035 5.86241 5.99597 6.15586 6.23430 6.31015 6.66367 6.75724 6.98270 7.02435 7.18078 7.25436 7.66765 7.81778 7.89770 8.05456 8.29002 8.54139 8.71010 8.85013 8.96505 9.85273 10.19074 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.018125 B = 0.004034 C = 0.003796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.498853 B = 6939.509922 C = 7374.149207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.297 6.297 3 C 0.095 3.905 4 C -0.171 4.171 5 C -0.132 4.132 6 C 0.057 3.943 7 N -0.431 5.431 8 C 0.095 3.905 9 C 0.194 3.806 10 N -0.744 5.744 11 C 0.180 3.820 12 C -0.096 4.096 13 N -0.446 5.446 14 C -0.052 4.052 15 C 0.097 3.903 16 C -0.453 4.453 17 H 0.081 0.919 18 C 0.077 3.923 19 N -0.789 5.789 20 Si 0.908 3.092 21 H -0.269 1.269 22 H -0.277 1.277 23 H -0.260 1.260 24 C -0.209 4.209 25 H 0.054 0.946 26 H 0.104 0.896 27 H 0.055 0.945 28 H 0.139 0.861 29 H 0.136 0.864 30 H 0.159 0.841 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.389 0.611 34 H 0.115 0.885 35 H 0.122 0.878 36 H 0.280 0.720 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.493 10.046 -6.706 18.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.208 6.208 3 C 0.046 3.954 4 C -0.197 4.197 5 C -0.152 4.152 6 C -0.100 4.100 7 N -0.140 5.140 8 C -0.045 4.045 9 C 0.068 3.932 10 N -0.378 5.378 11 C 0.079 3.921 12 C -0.255 4.255 13 N -0.153 5.153 14 C -0.217 4.217 15 C 0.092 3.908 16 C -0.484 4.484 17 H 0.099 0.901 18 C -0.142 4.142 19 N -0.414 5.414 20 Si 0.732 3.268 21 H -0.194 1.194 22 H -0.202 1.202 23 H -0.184 1.184 24 C -0.239 4.239 25 H 0.073 0.927 26 H 0.123 0.877 27 H 0.074 0.926 28 H 0.157 0.843 29 H 0.154 0.846 30 H 0.176 0.824 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.222 0.778 34 H 0.133 0.867 35 H 0.140 0.860 36 H 0.091 0.909 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -12.200 9.638 -7.547 17.282 hybrid contribution -1.747 0.953 1.914 2.761 sum -13.947 10.590 -5.633 18.395 Atomic orbital electron populations 1.23126 0.78364 1.04503 1.01060 1.86239 1.21269 1.25463 1.87838 1.19995 0.93243 0.85290 0.96853 1.21697 1.00742 0.92159 1.05135 1.21997 0.95794 0.98168 0.99271 1.22687 0.91397 0.96535 0.99365 1.67612 1.39972 0.97479 1.08953 1.20918 0.88247 0.94467 1.00914 1.19762 0.97381 0.89636 0.86394 1.44159 1.60828 1.28324 1.04512 1.18641 0.91743 0.86582 0.95142 1.21229 1.10740 0.97744 0.95820 1.66826 1.10137 1.12691 1.25626 1.22315 1.08179 1.03702 0.87501 1.18247 0.88043 0.90856 0.93693 1.19523 1.41312 0.96122 0.91395 0.90058 1.25931 0.92137 0.94407 1.01695 1.69844 1.34562 1.02565 1.34405 0.86327 0.79322 0.79860 0.81311 1.19422 1.20218 1.18384 1.21053 1.07029 1.02796 0.93067 0.92726 0.87750 0.92615 0.84332 0.84566 0.82419 0.91252 0.91062 0.77766 0.86739 0.86007 0.90948 0.85865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.83 101.05 0.99 1.20 16 2 O -0.30 -3.88 9.54 -19.46 -0.19 -4.06 16 3 C 0.10 1.26 6.67 -39.07 -0.26 0.99 16 4 C -0.17 -1.74 9.14 -39.13 -0.36 -2.10 16 5 C -0.13 -1.24 10.11 -39.47 -0.40 -1.64 16 6 C 0.06 0.66 11.18 -17.54 -0.20 0.46 16 7 N -0.43 -6.48 10.27 -9.36 -0.10 -6.58 16 8 C 0.09 1.45 6.16 -82.42 -0.51 0.94 16 9 C 0.19 3.36 4.99 -5.19 -0.03 3.34 16 10 N -0.74 -15.14 5.73 -59.75 -0.34 -15.48 16 11 C 0.18 4.38 6.66 -83.70 -0.56 3.82 16 12 C -0.10 -2.37 10.49 -17.08 -0.18 -2.54 16 13 N -0.45 -11.69 10.33 -12.37 -0.13 -11.81 16 14 C -0.05 -1.40 10.97 -16.74 -0.18 -1.58 16 15 C 0.10 2.66 5.59 -106.70 -0.60 2.07 16 16 C -0.45 -12.13 9.08 -37.74 -0.34 -12.47 16 17 H 0.08 2.06 7.90 -52.48 -0.41 1.65 16 18 C 0.08 1.93 5.18 -17.35 -0.09 1.84 16 19 N -0.79 -20.59 10.93 55.55 0.61 -19.98 16 20 Si 0.91 18.67 29.59 -169.99 -5.03 13.64 16 21 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 22 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 23 H -0.26 -5.30 7.11 56.52 0.40 -4.89 16 24 C -0.21 -5.57 8.67 -38.39 -0.33 -5.91 16 25 H 0.05 0.35 7.71 -51.93 -0.40 -0.05 16 26 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.06 0.40 7.69 -51.93 -0.40 0.00 16 28 H 0.14 1.01 6.45 -52.49 -0.34 0.67 16 29 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 30 H 0.16 1.35 8.06 -52.49 -0.42 0.93 16 31 H 0.07 1.24 7.96 -51.93 -0.41 0.83 16 32 H 0.07 1.22 7.32 -51.93 -0.38 0.84 16 33 H 0.39 7.79 8.48 -40.82 -0.35 7.44 16 34 H 0.12 2.54 6.73 -52.49 -0.35 2.19 16 35 H 0.12 3.01 8.06 -52.48 -0.42 2.59 16 36 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 37 H 0.12 3.36 6.22 -52.49 -0.33 3.04 16 LS Contribution 319.51 15.07 4.81 4.81 Total: -1.00 -31.45 319.51 -7.59 -39.04 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: -4.20 Total: 12.00 kcal Atomic # 6 Polarization: -8.54 SS G_CDS: -3.04 Total: -11.58 kcal Atomic # 7 Polarization: -53.89 SS G_CDS: 0.04 Total: -53.85 kcal Atomic # 8 Polarization: -3.88 SS G_CDS: -0.19 Total: -4.06 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -5.03 Total: 13.64 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.45 -7.59 -39.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169210060.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.860 kcal (2) G-P(sol) polarization free energy of solvation -31.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds