Wall clock time and date at job start Tue Mar 31 2020 05:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42890 * 1 3 3 C 1.35912 * 117.00348 * 2 1 4 4 C 1.39150 * 120.47127 * 0.25353 * 3 2 1 5 5 C 1.38531 * 118.37536 * 180.26508 * 4 3 2 6 6 C 1.38257 * 119.21963 * 359.75025 * 5 4 3 7 7 N 1.31843 * 120.88806 * 359.97438 * 6 5 4 8 8 C 1.31847 * 121.78186 * 0.02937 * 7 6 5 9 9 C 1.50695 * 119.65589 * 179.97438 * 8 7 6 10 10 N 1.46505 * 109.47255 * 90.00219 * 9 8 7 11 11 C 1.39720 * 120.00005 * 180.27424 * 10 9 8 12 12 C 1.39330 * 120.36266 * 359.43936 * 11 10 9 13 13 N 1.31991 * 121.20623 * 179.77130 * 12 11 10 14 14 C 1.31497 * 122.05555 * 0.50002 * 13 12 11 15 15 C 1.40759 * 120.56559 * 359.77109 * 14 13 12 16 16 C 1.41426 * 120.62483 * 179.97438 * 15 14 13 17 17 H 1.08005 * 119.99878 * 335.80506 * 16 15 14 18 18 C 1.39923 * 120.00235 * 155.80701 * 16 15 14 19 19 N 1.30829 * 120.00428 * 342.93382 * 18 16 15 20 20 Si 1.86804 * 119.99926 * 162.93765 * 18 16 15 21 21 H 1.48500 * 109.47326 * 90.00028 * 20 18 16 22 22 H 1.48502 * 109.46787 * 209.99921 * 20 18 16 23 23 H 1.48491 * 109.47162 * 329.99887 * 20 18 16 24 24 C 1.38651 * 120.36154 * 179.72206 * 11 10 9 25 25 H 1.09003 * 109.47356 * 59.99549 * 1 2 3 26 26 H 1.09000 * 109.47527 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47319 * 299.99959 * 1 2 3 28 28 H 1.07999 * 120.81082 * 0.02562 * 4 3 2 29 29 H 1.07993 * 120.39379 * 179.73214 * 5 4 3 30 30 H 1.07997 * 119.55640 * 180.02562 * 6 5 4 31 31 H 1.08994 * 109.47516 * 329.99550 * 9 8 7 32 32 H 1.09001 * 109.46891 * 209.99230 * 9 8 7 33 33 H 0.96998 * 119.99775 * 359.97438 * 10 9 8 34 34 H 1.07996 * 119.40312 * 0.02562 * 12 11 10 35 35 H 1.08008 * 119.71721 * 179.75282 * 14 13 12 36 36 H 0.96998 * 120.00576 * 179.97438 * 19 18 16 37 37 H 1.08001 * 120.93071 * 359.95253 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2978 2.3842 0.0053 5 6 1.9715 3.5947 -0.0006 6 6 3.3541 3.5976 -0.0061 7 7 4.0333 2.4676 -0.0054 8 6 3.4305 1.2950 0.0000 9 6 4.2542 0.0331 0.0000 10 7 4.5266 -0.3723 1.3812 11 6 5.2834 -1.5188 1.6364 12 6 5.7728 -2.2885 0.5832 13 7 6.4931 -3.3721 0.8051 14 6 6.7766 -3.7847 2.0210 15 6 6.3181 -3.0710 3.1442 16 6 6.6218 -3.5139 4.4525 17 1 6.8488 -4.5547 4.6312 18 6 6.6282 -2.6040 5.5155 19 7 6.6878 -1.3192 5.2764 20 14 6.5517 -3.2239 7.2760 21 1 7.9298 -3.4454 7.7832 22 1 5.8673 -2.2167 8.1260 23 1 5.7973 -4.5022 7.3184 24 6 5.5506 -1.9062 2.9406 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 0.2183 2.3519 0.0099 29 1 1.4233 4.5251 -0.0011 30 1 3.8848 4.5381 -0.0103 31 1 5.1959 0.2139 -0.5181 32 1 3.7054 -0.7590 -0.5095 33 1 4.1853 0.1576 2.1184 34 1 5.5624 -1.9910 -0.4335 35 1 7.3660 -4.6792 2.1590 36 1 6.6918 -0.6884 6.0133 37 1 5.1812 -1.3315 3.7771 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169210060.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:46 Heat of formation + Delta-G solvation = 8.346350 kcal Electronic energy + Delta-G solvation = -21305.175368 eV Core-core repulsion = 18046.608519 eV Total energy + Delta-G solvation = -3258.566849 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.122 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.78127 -40.22911 -39.15379 -36.94230 -35.80440 -33.52423 -32.39187 -32.05745 -30.01926 -28.35729 -27.58615 -26.81931 -23.95151 -23.87493 -23.04783 -22.27730 -19.17175 -19.10728 -18.16986 -18.06202 -17.31315 -16.96892 -16.95597 -16.44345 -16.23893 -15.41356 -15.21075 -14.98415 -14.86957 -14.56149 -14.36941 -14.06422 -13.70321 -13.48140 -13.25366 -13.09459 -13.03046 -12.65453 -12.38573 -12.30416 -12.18610 -11.79930 -11.20906 -11.13496 -10.76735 -10.57574 -10.00434 -9.70094 -9.44705 -8.68090 -8.12444 -6.43187 -0.00673 0.25038 0.94563 1.21429 1.39922 1.51659 1.58212 2.20998 2.21895 2.48467 2.78311 3.00730 3.25723 3.58046 3.77876 3.81741 4.03929 4.22812 4.27310 4.31364 4.35366 4.46369 4.56930 4.66373 4.69021 4.74839 4.84499 4.96764 5.01575 5.08804 5.18203 5.30345 5.46774 5.70461 5.86823 6.01117 6.21405 6.33977 6.72652 6.75890 6.84396 6.96936 7.02669 7.81388 8.29549 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.018125 B = 0.004034 C = 0.003796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.498853 B = 6939.509922 C = 7374.149207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.327 6.327 3 C 0.088 3.912 4 C -0.165 4.165 5 C -0.113 4.113 6 C 0.046 3.954 7 N -0.466 5.466 8 C 0.059 3.941 9 C 0.198 3.802 10 N -0.734 5.734 11 C 0.189 3.811 12 C -0.106 4.106 13 N -0.452 5.452 14 C -0.077 4.077 15 C 0.074 3.926 16 C -0.484 4.484 17 H 0.086 0.914 18 C 0.036 3.964 19 N -0.818 5.818 20 Si 0.987 3.013 21 H -0.260 1.260 22 H -0.267 1.267 23 H -0.256 1.256 24 C -0.235 4.235 25 H 0.077 0.923 26 H 0.112 0.888 27 H 0.068 0.932 28 H 0.173 0.827 29 H 0.181 0.819 30 H 0.183 0.817 31 H 0.058 0.942 32 H 0.071 0.929 33 H 0.390 0.610 34 H 0.137 0.863 35 H 0.132 0.868 36 H 0.289 0.711 37 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.570 11.799 -6.159 20.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.239 6.239 3 C 0.039 3.961 4 C -0.191 4.191 5 C -0.132 4.132 6 C -0.112 4.112 7 N -0.176 5.176 8 C -0.080 4.080 9 C 0.074 3.926 10 N -0.366 5.366 11 C 0.085 3.915 12 C -0.266 4.266 13 N -0.160 5.160 14 C -0.241 4.241 15 C 0.069 3.931 16 C -0.513 4.513 17 H 0.104 0.896 18 C -0.180 4.180 19 N -0.443 5.443 20 Si 0.807 3.193 21 H -0.185 1.185 22 H -0.191 1.191 23 H -0.180 1.180 24 C -0.266 4.266 25 H 0.095 0.905 26 H 0.130 0.870 27 H 0.087 0.913 28 H 0.191 0.809 29 H 0.198 0.802 30 H 0.200 0.800 31 H 0.076 0.924 32 H 0.089 0.911 33 H 0.223 0.777 34 H 0.154 0.846 35 H 0.149 0.851 36 H 0.100 0.900 37 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -14.292 11.396 -7.033 19.586 hybrid contribution -1.200 0.574 1.653 2.121 sum -15.492 11.970 -5.380 20.303 Atomic orbital electron populations 1.23426 0.76040 1.05715 1.02726 1.86191 1.23808 1.25974 1.87915 1.20042 0.92718 0.86474 0.96880 1.22123 1.02350 0.91164 1.03507 1.22477 0.95052 0.99632 0.96049 1.23244 0.92868 0.96252 0.98836 1.67484 1.41599 0.98364 1.10177 1.20487 0.89114 0.93638 1.04712 1.19720 0.97372 0.91397 0.84151 1.44257 1.59341 1.26803 1.06187 1.18676 0.91121 0.87340 0.94339 1.21596 1.10584 0.97518 0.96935 1.66824 1.10369 1.13253 1.25533 1.22480 1.09419 1.04572 0.87615 1.18582 0.88497 0.91474 0.94565 1.19844 1.42572 0.96838 0.92055 0.89585 1.26859 0.90816 0.94238 1.06055 1.69901 1.34205 1.03874 1.36312 0.85133 0.79693 0.79361 0.75101 1.18473 1.19129 1.17961 1.21015 1.08510 1.03390 0.93659 0.90498 0.86999 0.91331 0.80932 0.80210 0.79966 0.92393 0.91119 0.77695 0.84570 0.85062 0.90037 0.87055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.83 113.37 1.11 1.33 16 2 O -0.33 -8.27 9.54 -92.56 -0.88 -9.15 16 3 C 0.09 2.21 6.67 22.60 0.15 2.36 16 4 C -0.17 -2.81 9.14 22.56 0.21 -2.61 16 5 C -0.11 -1.67 10.11 22.34 0.23 -1.44 16 6 C 0.05 0.95 11.18 84.70 0.95 1.90 16 7 N -0.47 -13.86 10.27 -183.51 -1.88 -15.74 16 8 C 0.06 1.80 6.16 42.67 0.26 2.06 16 9 C 0.20 7.09 4.99 85.63 0.43 7.52 16 10 N -0.73 -30.80 5.73 -342.95 -1.96 -32.76 16 11 C 0.19 9.49 6.66 38.25 0.25 9.74 16 12 C -0.11 -5.37 10.49 84.93 0.89 -4.48 16 13 N -0.45 -24.33 10.33 -193.05 -1.99 -26.33 16 14 C -0.08 -4.23 10.97 85.36 0.94 -3.30 16 15 C 0.07 4.22 5.59 -21.21 -0.12 4.10 16 16 C -0.48 -26.51 9.08 23.46 0.21 -26.30 16 17 H 0.09 4.46 7.90 -2.91 -0.02 4.44 16 18 C 0.04 1.84 5.18 85.25 0.44 2.29 16 19 N -0.82 -43.33 10.93 21.82 0.24 -43.09 16 20 Si 0.99 38.02 29.59 68.60 2.03 40.05 16 21 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 22 H -0.27 -9.76 7.11 99.48 0.71 -9.05 16 23 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 24 C -0.23 -13.01 8.67 23.04 0.20 -12.81 16 25 H 0.08 0.74 7.71 -2.39 -0.02 0.72 16 26 H 0.11 1.38 8.14 -2.39 -0.02 1.37 16 27 H 0.07 0.79 7.69 -2.39 -0.02 0.77 16 28 H 0.17 1.68 6.45 -2.91 -0.02 1.66 16 29 H 0.18 1.10 8.06 -2.91 -0.02 1.07 16 30 H 0.18 2.63 8.06 -2.91 -0.02 2.60 16 31 H 0.06 2.17 7.96 -2.39 -0.02 2.15 16 32 H 0.07 2.50 7.32 -2.39 -0.02 2.48 16 33 H 0.39 16.14 8.48 -92.71 -0.79 15.36 16 34 H 0.14 6.14 6.73 -2.91 -0.02 6.12 16 35 H 0.13 6.73 8.06 -2.91 -0.02 6.71 16 36 H 0.29 13.78 8.30 -92.71 -0.77 13.01 16 37 H 0.11 6.34 6.22 -2.91 -0.02 6.32 16 Total: -1.00 -70.79 319.51 2.02 -68.77 By element: Atomic # 1 Polarization: 37.57 SS G_CDS: 0.32 Total: 37.89 kcal Atomic # 6 Polarization: -25.79 SS G_CDS: 6.15 Total: -19.63 kcal Atomic # 7 Polarization: -112.32 SS G_CDS: -5.60 Total: -117.93 kcal Atomic # 8 Polarization: -8.27 SS G_CDS: -0.88 Total: -9.15 kcal Atomic # 14 Polarization: 38.02 SS G_CDS: 2.03 Total: 40.05 kcal Total: -70.79 2.02 -68.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169210060.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.121 kcal (2) G-P(sol) polarization free energy of solvation -70.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds