Wall clock time and date at job start Tue Mar 31 2020 05:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35843 * 117.00240 * 2 1 4 4 N 1.32105 * 119.63960 * 0.02562 * 3 2 1 5 5 C 1.31979 * 121.79651 * 179.75360 * 4 3 2 6 6 C 1.38797 * 120.86288 * 0.48915 * 5 4 3 7 7 N 1.39801 * 120.40357 * 179.77376 * 6 5 4 8 8 C 1.38760 * 119.99792 * 324.54100 * 7 6 5 9 9 C 1.39622 * 119.84888 * 331.29354 * 8 7 6 10 10 C 1.36295 * 120.15560 * 179.71963 * 9 8 7 11 11 C 1.40906 * 119.84158 * 0.57850 * 10 9 8 12 12 C 1.41098 * 120.15346 * 179.67652 * 11 10 9 13 13 H 1.08000 * 120.00080 * 204.18811 * 12 11 10 14 14 C 1.39831 * 120.00189 * 24.18177 * 12 11 10 15 15 N 1.30926 * 119.99572 * 19.26884 * 14 12 11 16 16 Si 1.86801 * 120.00366 * 199.26419 * 14 12 11 17 17 H 1.48493 * 109.46991 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.46599 * 120.00058 * 16 14 12 19 19 H 1.48491 * 109.47134 * 240.00303 * 16 14 12 20 20 C 1.40903 * 119.69824 * 359.69881 * 11 10 9 21 21 C 1.36301 * 119.84054 * 0.02562 * 20 11 10 22 22 C 1.39379 * 119.18924 * 359.50198 * 6 5 4 23 23 C 1.38864 * 118.36359 * 0.24987 * 22 6 5 24 24 N 1.39945 * 120.46860 * 180.02562 * 23 22 6 25 25 H 1.09001 * 109.46721 * 60.00267 * 1 2 3 26 26 H 1.08997 * 109.47562 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47446 * 300.00413 * 1 2 3 28 28 H 1.08007 * 119.57145 * 180.24469 * 5 4 3 29 29 H 0.96999 * 120.00134 * 144.53639 * 7 6 5 30 30 H 1.07994 * 119.91914 * 0.02562 * 9 8 7 31 31 H 1.08001 * 120.08282 * 180.27909 * 10 9 8 32 32 H 0.96998 * 120.00138 * 179.97438 * 15 14 12 33 33 H 1.08005 * 120.08306 * 179.97438 * 20 11 10 34 34 H 1.08000 * 119.92495 * 180.02562 * 21 20 11 35 35 H 1.08005 * 120.81871 * 180.26889 * 22 6 5 36 36 H 0.96999 * 120.00010 * 0.02562 * 24 23 22 37 37 H 0.97002 * 120.00112 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2103 0.0000 4 7 1.3194 2.3138 0.0005 5 6 1.8739 3.5114 0.0054 6 6 3.2542 3.6569 0.0000 7 7 3.8314 4.9302 0.0004 8 6 3.2235 5.9678 -0.6919 9 6 2.4493 5.6906 -1.8203 10 6 1.8447 6.7043 -2.5017 11 6 2.0123 8.0358 -2.0720 12 6 1.3949 9.0909 -2.7765 13 1 1.8030 10.0893 -2.7204 14 6 0.2547 8.8441 -3.5474 15 7 -0.4584 7.7668 -3.3350 16 14 -0.2512 10.0513 -4.8802 17 1 0.7144 11.1787 -4.9192 18 1 -0.2597 9.3616 -6.1953 19 1 -1.6100 10.5727 -4.5858 20 6 2.7996 8.3088 -0.9358 21 6 3.3940 7.2847 -0.2606 22 6 4.0578 2.5181 -0.0001 23 6 3.4398 1.2746 -0.0001 24 7 4.2041 0.1023 0.0003 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.2455 4.3898 0.0096 29 1 4.6568 5.0884 0.4847 30 1 2.3254 4.6700 -2.1511 31 1 1.2425 6.4882 -3.3718 32 1 -1.2495 7.5956 -3.8695 33 1 2.9326 9.3270 -0.6013 34 1 3.9974 7.4924 0.6107 35 1 5.1347 2.6008 0.0001 36 1 5.1727 0.1548 0.0010 37 1 3.7653 -0.7628 0.0007 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001203503480.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:11 Heat of formation + Delta-G solvation = 25.532367 kcal Electronic energy + Delta-G solvation = -21318.469323 eV Core-core repulsion = 18060.647716 eV Total energy + Delta-G solvation = -3257.821607 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.122 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.36457 -38.41549 -37.26117 -35.32400 -34.63932 -33.18502 -30.37893 -29.62917 -28.73451 -28.14468 -26.63922 -24.71503 -22.96856 -22.11459 -21.08587 -20.21036 -18.00630 -17.74768 -17.35151 -16.85552 -16.07468 -15.66733 -15.39982 -15.08908 -14.92431 -14.02309 -13.92440 -13.41061 -13.32681 -13.08767 -12.72446 -12.44114 -12.11886 -11.85493 -11.75090 -11.58624 -11.13637 -11.09058 -10.96372 -10.87222 -10.55044 -10.10107 -9.81409 -9.42762 -9.36656 -9.11209 -8.24874 -7.61883 -7.27756 -6.79684 -6.45430 -4.22462 1.66520 1.71793 2.77844 3.01935 3.08612 3.13327 3.20694 3.39811 3.79412 3.93859 4.17073 4.23067 4.62652 4.95249 5.25411 5.37656 5.50889 5.51672 5.67550 5.67765 5.78376 5.89283 6.15708 6.24373 6.41635 6.66058 6.86659 6.95341 7.05933 7.20689 7.22998 7.43085 7.55903 7.66034 7.75909 7.80426 8.01795 8.14644 8.29351 8.36396 8.50093 8.62244 8.88542 8.97555 10.18227 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.022249 B = 0.003910 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.181113 B = 7159.069579 C = 8073.482615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 O -0.323 6.323 3 C 0.194 3.806 4 N -0.471 5.471 5 C 0.039 3.961 6 C 0.176 3.824 7 N -0.671 5.671 8 C 0.028 3.972 9 C -0.123 4.123 10 C -0.142 4.142 11 C 0.097 3.903 12 C -0.460 4.460 13 H 0.078 0.922 14 C 0.076 3.924 15 N -0.791 5.791 16 Si 0.905 3.095 17 H -0.261 1.261 18 H -0.272 1.272 19 H -0.275 1.275 20 C -0.206 4.206 21 C -0.119 4.119 22 C -0.201 4.201 23 C 0.190 3.810 24 N -0.870 5.870 25 H 0.054 0.946 26 H 0.086 0.914 27 H 0.053 0.947 28 H 0.160 0.840 29 H 0.395 0.605 30 H 0.090 0.910 31 H 0.119 0.881 32 H 0.280 0.720 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.133 0.867 36 H 0.395 0.605 37 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.246 -11.621 4.729 13.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 O -0.232 6.232 3 C 0.010 3.990 4 N -0.191 5.191 5 C -0.123 4.123 6 C 0.072 3.928 7 N -0.294 5.294 8 C -0.066 4.066 9 C -0.143 4.143 10 C -0.162 4.162 11 C 0.094 3.906 12 C -0.489 4.489 13 H 0.096 0.904 14 C -0.142 4.142 15 N -0.416 5.416 16 Si 0.729 3.271 17 H -0.184 1.184 18 H -0.197 1.197 19 H -0.200 1.200 20 C -0.226 4.226 21 C -0.139 4.139 22 C -0.236 4.236 23 C 0.083 3.917 24 N -0.412 5.412 25 H 0.073 0.927 26 H 0.104 0.896 27 H 0.072 0.928 28 H 0.177 0.823 29 H 0.230 0.770 30 H 0.109 0.891 31 H 0.137 0.863 32 H 0.091 0.909 33 H 0.113 0.887 34 H 0.108 0.892 35 H 0.151 0.849 36 H 0.223 0.777 37 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 4.068 -11.959 4.565 13.431 hybrid contribution 0.820 0.469 -0.431 1.038 sum 4.888 -11.489 4.134 13.152 Atomic orbital electron populations 1.22662 0.78073 1.01799 1.02249 1.86033 1.22078 1.24741 1.90342 1.19023 0.87317 0.85240 1.07452 1.67073 1.39608 0.98198 1.14269 1.22121 0.91721 0.93441 1.05009 1.18359 0.92550 0.85647 0.96287 1.41406 1.27029 1.05392 1.55599 1.17167 1.06530 0.86376 0.96503 1.20297 1.00892 0.98040 0.95098 1.20921 1.02018 0.92229 1.00993 1.17606 0.90210 0.92846 0.89958 1.19517 1.08843 0.96262 1.24321 0.90426 1.25892 0.95576 0.95868 0.96877 1.69876 1.12500 1.25173 1.34065 0.86315 0.78931 0.81085 0.80736 1.18420 1.19732 1.20026 1.20552 1.06644 0.96765 0.98626 1.20008 1.02777 0.91708 0.99449 1.20466 0.99638 0.89267 1.14216 1.17453 0.87832 0.87793 0.98626 1.42196 1.07897 1.05286 1.85818 0.92699 0.89562 0.92842 0.82265 0.77002 0.89142 0.86320 0.90887 0.88723 0.89219 0.84918 0.77656 0.76907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.59 10.38 101.05 1.05 1.64 16 2 O -0.32 -4.71 9.74 -19.25 -0.19 -4.90 16 3 C 0.19 3.20 7.51 -16.95 -0.13 3.07 16 4 N -0.47 -8.57 9.20 -12.97 -0.12 -8.69 16 5 C 0.04 0.73 9.17 -17.28 -0.16 0.57 16 6 C 0.18 3.02 5.75 -83.59 -0.48 2.54 16 7 N -0.67 -11.61 5.42 -8.20 -0.04 -11.66 16 8 C 0.03 0.59 5.95 -83.69 -0.50 0.09 16 9 C -0.12 -2.83 8.07 -39.76 -0.32 -3.15 16 10 C -0.14 -3.61 8.64 -39.27 -0.34 -3.95 16 11 C 0.10 2.51 5.57 -106.79 -0.60 1.91 16 12 C -0.46 -11.97 9.02 -37.90 -0.34 -12.31 16 13 H 0.08 1.95 7.91 -52.49 -0.42 1.53 16 14 C 0.08 1.88 5.10 -17.34 -0.09 1.79 16 15 N -0.79 -20.29 11.01 55.54 0.61 -19.68 16 16 Si 0.90 18.47 29.60 -169.99 -5.03 13.44 16 17 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 18 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 19 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 20 C -0.21 -4.85 9.74 -39.27 -0.38 -5.23 16 21 C -0.12 -2.52 9.88 -39.76 -0.39 -2.91 16 22 C -0.20 -2.95 9.97 -38.93 -0.39 -3.34 16 23 C 0.19 2.75 6.80 -83.43 -0.57 2.18 16 24 N -0.87 -9.19 9.10 32.58 0.30 -8.90 16 25 H 0.05 0.72 8.10 -51.93 -0.42 0.30 16 26 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.05 0.67 8.10 -51.93 -0.42 0.25 16 28 H 0.16 3.28 6.99 -52.48 -0.37 2.91 16 29 H 0.40 5.77 8.91 -40.82 -0.36 5.41 16 30 H 0.09 2.04 6.69 -52.49 -0.35 1.69 16 31 H 0.12 3.16 6.18 -52.49 -0.32 2.84 16 32 H 0.28 6.56 8.30 -40.82 -0.34 6.22 16 33 H 0.09 2.10 8.06 -52.48 -0.42 1.68 16 34 H 0.09 1.65 8.06 -52.49 -0.42 1.23 16 35 H 0.13 1.60 8.06 -52.48 -0.42 1.18 16 36 H 0.40 3.18 8.86 -40.82 -0.36 2.82 16 37 H 0.40 3.89 8.21 -40.82 -0.34 3.55 16 LS Contribution 317.52 15.07 4.78 4.78 Total: -1.00 -28.32 317.52 -7.51 -35.83 By element: Atomic # 1 Polarization: 21.05 SS G_CDS: -4.18 Total: 16.86 kcal Atomic # 6 Polarization: -13.46 SS G_CDS: -3.63 Total: -17.09 kcal Atomic # 7 Polarization: -49.67 SS G_CDS: 0.74 Total: -48.93 kcal Atomic # 8 Polarization: -4.71 SS G_CDS: -0.19 Total: -4.90 kcal Atomic # 14 Polarization: 18.47 SS G_CDS: -5.03 Total: 13.44 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -28.32 -7.51 -35.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203503480.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.362 kcal (2) G-P(sol) polarization free energy of solvation -28.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds