Wall clock time and date at job start Tue Mar 31 2020 05:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35843 * 117.00240 * 2 1 4 4 N 1.32105 * 119.63960 * 0.02562 * 3 2 1 5 5 C 1.31979 * 121.79651 * 179.75360 * 4 3 2 6 6 C 1.38797 * 120.86288 * 0.48915 * 5 4 3 7 7 N 1.39801 * 120.40357 * 179.77376 * 6 5 4 8 8 C 1.38760 * 119.99792 * 324.54100 * 7 6 5 9 9 C 1.39622 * 119.84888 * 331.29354 * 8 7 6 10 10 C 1.36295 * 120.15560 * 179.71963 * 9 8 7 11 11 C 1.40906 * 119.84158 * 0.57850 * 10 9 8 12 12 C 1.41098 * 120.15346 * 179.67652 * 11 10 9 13 13 H 1.08000 * 120.00080 * 204.18811 * 12 11 10 14 14 C 1.39831 * 120.00189 * 24.18177 * 12 11 10 15 15 N 1.30926 * 119.99572 * 19.26884 * 14 12 11 16 16 Si 1.86801 * 120.00366 * 199.26419 * 14 12 11 17 17 H 1.48493 * 109.46991 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.46599 * 120.00058 * 16 14 12 19 19 H 1.48491 * 109.47134 * 240.00303 * 16 14 12 20 20 C 1.40903 * 119.69824 * 359.69881 * 11 10 9 21 21 C 1.36301 * 119.84054 * 0.02562 * 20 11 10 22 22 C 1.39379 * 119.18924 * 359.50198 * 6 5 4 23 23 C 1.38864 * 118.36359 * 0.24987 * 22 6 5 24 24 N 1.39945 * 120.46860 * 180.02562 * 23 22 6 25 25 H 1.09001 * 109.46721 * 60.00267 * 1 2 3 26 26 H 1.08997 * 109.47562 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47446 * 300.00413 * 1 2 3 28 28 H 1.08007 * 119.57145 * 180.24469 * 5 4 3 29 29 H 0.96999 * 120.00134 * 144.53639 * 7 6 5 30 30 H 1.07994 * 119.91914 * 0.02562 * 9 8 7 31 31 H 1.08001 * 120.08282 * 180.27909 * 10 9 8 32 32 H 0.96998 * 120.00138 * 179.97438 * 15 14 12 33 33 H 1.08005 * 120.08306 * 179.97438 * 20 11 10 34 34 H 1.08000 * 119.92495 * 180.02562 * 21 20 11 35 35 H 1.08005 * 120.81871 * 180.26889 * 22 6 5 36 36 H 0.96999 * 120.00010 * 0.02562 * 24 23 22 37 37 H 0.97002 * 120.00112 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2103 0.0000 4 7 1.3194 2.3138 0.0005 5 6 1.8739 3.5114 0.0054 6 6 3.2542 3.6569 0.0000 7 7 3.8314 4.9302 0.0004 8 6 3.2235 5.9678 -0.6919 9 6 2.4493 5.6906 -1.8203 10 6 1.8447 6.7043 -2.5017 11 6 2.0123 8.0358 -2.0720 12 6 1.3949 9.0909 -2.7765 13 1 1.8030 10.0893 -2.7204 14 6 0.2547 8.8441 -3.5474 15 7 -0.4584 7.7668 -3.3350 16 14 -0.2512 10.0513 -4.8802 17 1 0.7144 11.1787 -4.9192 18 1 -0.2597 9.3616 -6.1953 19 1 -1.6100 10.5727 -4.5858 20 6 2.7996 8.3088 -0.9358 21 6 3.3940 7.2847 -0.2606 22 6 4.0578 2.5181 -0.0001 23 6 3.4398 1.2746 -0.0001 24 7 4.2041 0.1023 0.0003 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.2455 4.3898 0.0096 29 1 4.6568 5.0884 0.4847 30 1 2.3254 4.6700 -2.1511 31 1 1.2425 6.4882 -3.3718 32 1 -1.2495 7.5956 -3.8695 33 1 2.9326 9.3270 -0.6013 34 1 3.9974 7.4924 0.6107 35 1 5.1347 2.6008 0.0001 36 1 5.1727 0.1548 0.0010 37 1 3.7653 -0.7628 0.0007 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001203503480.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:10 Heat of formation + Delta-G solvation = 5.630534 kcal Electronic energy + Delta-G solvation = -21319.332331 eV Core-core repulsion = 18060.647716 eV Total energy + Delta-G solvation = -3258.684616 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.122 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.64875 -39.97263 -38.65108 -36.77626 -35.89972 -34.91535 -31.85556 -31.44637 -30.14302 -29.51393 -27.83323 -26.47236 -24.23313 -23.55666 -22.85071 -21.86808 -19.26195 -19.17066 -18.98173 -18.19894 -17.57827 -16.87356 -16.82832 -16.50521 -16.20462 -15.73637 -15.22417 -14.81042 -14.65576 -14.60299 -14.28574 -13.89007 -13.81377 -13.58399 -13.42090 -12.78066 -12.66446 -12.57244 -12.34730 -12.27663 -12.15975 -11.68585 -11.54988 -11.20312 -10.87288 -10.65481 -9.72778 -9.44706 -8.68154 -8.56278 -7.96781 -6.12324 0.34540 0.43617 1.06117 1.16738 1.40208 1.53479 1.56007 2.23589 2.25495 2.56383 2.75429 2.95167 3.00597 3.65418 3.79122 4.10645 4.14481 4.40633 4.44806 4.48868 4.53680 4.55994 4.58173 4.82265 4.99889 5.10530 5.17347 5.22825 5.38467 5.39278 5.66679 5.75792 5.94112 6.13051 6.17146 6.32234 6.51745 6.59745 6.77284 6.93596 6.99672 7.02690 7.10434 7.18720 8.38083 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.022249 B = 0.003910 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.181113 B = 7159.069579 C = 8073.482615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.321 6.321 3 C 0.185 3.815 4 N -0.491 5.491 5 C 0.010 3.990 6 C 0.168 3.832 7 N -0.664 5.664 8 C 0.055 3.945 9 C -0.129 4.129 10 C -0.163 4.163 11 C 0.062 3.938 12 C -0.498 4.498 13 H 0.076 0.924 14 C 0.034 3.966 15 N -0.830 5.830 16 Si 0.978 3.022 17 H -0.256 1.256 18 H -0.267 1.267 19 H -0.268 1.268 20 C -0.212 4.212 21 C -0.120 4.120 22 C -0.190 4.190 23 C 0.199 3.801 24 N -0.849 5.849 25 H 0.041 0.959 26 H 0.125 0.875 27 H 0.046 0.954 28 H 0.129 0.871 29 H 0.414 0.586 30 H 0.089 0.911 31 H 0.096 0.904 32 H 0.285 0.715 33 H 0.104 0.896 34 H 0.127 0.873 35 H 0.168 0.832 36 H 0.412 0.588 37 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.210 -13.313 5.519 16.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.230 6.230 3 C -0.001 4.001 4 N -0.213 5.213 5 C -0.150 4.150 6 C 0.065 3.935 7 N -0.290 5.290 8 C -0.040 4.040 9 C -0.150 4.150 10 C -0.183 4.183 11 C 0.060 3.940 12 C -0.528 4.528 13 H 0.094 0.906 14 C -0.180 4.180 15 N -0.456 5.456 16 Si 0.799 3.201 17 H -0.180 1.180 18 H -0.192 1.192 19 H -0.192 1.192 20 C -0.232 4.232 21 C -0.141 4.141 22 C -0.224 4.224 23 C 0.089 3.911 24 N -0.391 5.391 25 H 0.060 0.940 26 H 0.143 0.857 27 H 0.065 0.935 28 H 0.147 0.853 29 H 0.251 0.749 30 H 0.107 0.893 31 H 0.114 0.886 32 H 0.096 0.904 33 H 0.122 0.878 34 H 0.145 0.855 35 H 0.185 0.815 36 H 0.243 0.757 37 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 6.082 -13.704 5.388 15.932 hybrid contribution 0.294 0.654 -0.518 0.884 sum 6.376 -13.051 4.870 15.320 Atomic orbital electron populations 1.22860 0.76912 1.04031 1.01283 1.86043 1.23210 1.23669 1.90080 1.19412 0.88436 0.85290 1.06978 1.66952 1.40647 0.98569 1.15092 1.21755 0.92406 0.92955 1.07915 1.18370 0.92089 0.86208 0.96877 1.41199 1.27539 1.04676 1.55546 1.17186 1.04218 0.87509 0.95114 1.20295 1.01472 0.97341 0.95886 1.20805 1.03142 0.93094 1.01253 1.17907 0.91683 0.93067 0.91382 1.19742 1.10134 0.96372 1.26551 0.90575 1.26708 0.95088 0.97652 0.98528 1.69946 1.13209 1.27137 1.35322 0.85226 0.78646 0.78664 0.77584 1.17967 1.19233 1.19243 1.20785 1.06276 0.98060 0.98101 1.20316 1.02607 0.91040 1.00124 1.20711 1.01029 0.88128 1.12551 1.17540 0.87454 0.89085 0.96977 1.42169 1.08702 1.04349 1.83899 0.94046 0.85719 0.93478 0.85347 0.74878 0.89286 0.88619 0.90439 0.87765 0.85495 0.81481 0.75669 0.75996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.03 10.38 113.37 1.18 2.21 16 2 O -0.32 -8.75 9.74 -91.79 -0.89 -9.64 16 3 C 0.18 5.81 7.51 84.97 0.64 6.44 16 4 N -0.49 -17.99 9.20 -307.79 -2.83 -20.82 16 5 C 0.01 0.38 9.17 84.80 0.78 1.16 16 6 C 0.17 5.52 5.75 38.28 0.22 5.74 16 7 N -0.66 -21.65 5.42 -179.86 -0.97 -22.63 16 8 C 0.06 2.28 5.95 38.72 0.23 2.51 16 9 C -0.13 -6.13 8.07 22.15 0.18 -5.95 16 10 C -0.16 -8.74 8.64 22.47 0.19 -8.55 16 11 C 0.06 3.36 5.57 -21.27 -0.12 3.25 16 12 C -0.50 -27.08 9.02 23.36 0.21 -26.87 16 13 H 0.08 3.98 7.91 -2.91 -0.02 3.95 16 14 C 0.03 1.76 5.10 85.21 0.43 2.20 16 15 N -0.83 -44.80 11.01 21.81 0.24 -44.56 16 16 Si 0.98 39.03 29.60 68.60 2.03 41.06 16 17 H -0.26 -9.91 7.11 99.48 0.71 -9.21 16 18 H -0.27 -10.35 7.11 99.48 0.71 -9.65 16 19 H -0.27 -10.25 7.11 99.48 0.71 -9.55 16 20 C -0.21 -10.10 9.74 22.47 0.22 -9.88 16 21 C -0.12 -4.96 9.88 22.15 0.22 -4.74 16 22 C -0.19 -4.94 9.97 22.69 0.23 -4.71 16 23 C 0.20 5.16 6.80 38.31 0.26 5.42 16 24 N -0.85 -14.44 9.10 -50.84 -0.46 -14.90 16 25 H 0.04 1.07 8.10 -2.39 -0.02 1.05 16 26 H 0.12 1.90 8.14 -2.39 -0.02 1.88 16 27 H 0.05 1.15 8.10 -2.39 -0.02 1.13 16 28 H 0.13 5.61 6.99 -2.91 -0.02 5.59 16 29 H 0.41 10.65 8.91 -92.71 -0.83 9.83 16 30 H 0.09 4.18 6.69 -2.91 -0.02 4.16 16 31 H 0.10 5.48 6.18 -2.91 -0.02 5.46 16 32 H 0.29 14.01 8.30 -92.71 -0.77 13.24 16 33 H 0.10 4.64 8.06 -2.91 -0.02 4.62 16 34 H 0.13 4.27 8.06 -2.91 -0.02 4.25 16 35 H 0.17 3.17 8.06 -2.91 -0.02 3.15 16 36 H 0.41 4.64 8.86 -92.71 -0.82 3.82 16 37 H 0.41 6.28 8.21 -92.71 -0.76 5.52 16 Total: -1.00 -64.72 317.52 0.71 -64.01 By element: Atomic # 1 Polarization: 40.51 SS G_CDS: -1.27 Total: 39.25 kcal Atomic # 6 Polarization: -36.64 SS G_CDS: 4.87 Total: -31.77 kcal Atomic # 7 Polarization: -98.88 SS G_CDS: -4.03 Total: -102.91 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: -0.89 Total: -9.64 kcal Atomic # 14 Polarization: 39.03 SS G_CDS: 2.03 Total: 41.06 kcal Total: -64.72 0.71 -64.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203503480.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.644 kcal (2) G-P(sol) polarization free energy of solvation -64.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds