Wall clock time and date at job start Tue Mar 31 2020 05:23:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35853 * 116.99979 * 2 1 4 4 N 1.32095 * 119.63778 * 0.02562 * 3 2 1 5 5 C 1.31988 * 121.79675 * 180.02562 * 4 3 2 6 6 C 1.38799 * 120.85950 * 359.97438 * 5 4 3 7 7 N 1.39789 * 120.40296 * 179.97438 * 6 5 4 8 8 C 1.38630 * 119.99840 * 4.31750 * 7 6 5 9 9 C 1.38838 * 120.29665 * 250.03574 * 8 7 6 10 10 C 1.38101 * 120.01690 * 180.30470 * 9 8 7 11 11 C 1.38939 * 120.63599 * 359.71500 * 10 9 8 12 12 C 1.36416 * 120.61411 * 0.02562 * 11 10 9 13 13 C 1.40751 * 119.95172 * 359.97438 * 12 11 10 14 14 C 1.41000 * 120.30921 * 180.02562 * 13 12 11 15 15 H 1.08001 * 119.99600 * 203.25672 * 14 13 12 16 16 C 1.39889 * 120.00268 * 23.25736 * 14 13 12 17 17 N 1.30900 * 119.99768 * 34.20186 * 16 14 13 18 18 Si 1.86806 * 120.00344 * 214.20048 * 16 14 13 19 19 H 1.48492 * 109.47059 * 180.02562 * 18 16 14 20 20 H 1.48505 * 109.46852 * 300.00021 * 18 16 14 21 21 H 1.48500 * 109.46879 * 59.99968 * 18 16 14 22 22 C 1.39390 * 119.19190 * 0.25172 * 6 5 4 23 23 C 1.38864 * 118.35710 * 359.51168 * 22 6 5 24 24 N 1.39947 * 120.46603 * 180.23885 * 23 22 6 25 25 H 1.09004 * 109.46732 * 59.99606 * 1 2 3 26 26 H 1.08996 * 109.47492 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47421 * 300.00575 * 1 2 3 28 28 H 1.07998 * 119.57102 * 179.97438 * 5 4 3 29 29 H 0.96996 * 120.00151 * 184.31833 * 7 6 5 30 30 H 1.07999 * 119.99355 * 359.97438 * 9 8 7 31 31 H 1.07997 * 119.68242 * 179.74026 * 10 9 8 32 32 H 1.08003 * 119.69400 * 180.02562 * 11 10 9 33 33 H 1.07998 * 120.02840 * 180.02562 * 12 11 10 34 34 H 0.96999 * 120.00097 * 3.92648 * 17 16 14 35 35 H 1.08000 * 120.82050 * 179.72898 * 22 6 5 36 36 H 0.96997 * 119.99850 * 180.25577 * 24 23 22 37 37 H 0.96997 * 119.99806 * 0.25462 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2105 0.0000 4 7 1.3194 2.3137 0.0005 5 6 1.8738 3.5115 0.0000 6 6 3.2542 3.6570 -0.0005 7 7 3.8313 4.9302 -0.0015 8 6 3.0271 6.0558 0.0883 9 6 2.8754 6.8974 -1.0055 10 6 2.0778 8.0206 -0.9076 11 6 1.4163 8.3181 0.2774 12 6 1.5428 7.5063 1.3664 13 6 2.3492 6.3549 1.2947 14 6 2.4850 5.5103 2.4155 15 1 3.3501 4.8705 2.5079 16 6 1.4991 5.5010 3.4079 17 7 0.2432 5.6792 3.0845 18 14 1.9746 5.2344 5.1946 19 1 0.7554 5.2678 6.0416 20 1 2.6403 3.9147 5.3380 21 1 2.9061 6.3081 5.6244 22 6 4.0579 2.5182 -0.0059 23 6 3.4398 1.2747 -0.0001 24 7 4.2041 0.1024 -0.0001 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.2453 4.3898 0.0001 29 1 4.7944 5.0261 -0.0652 30 1 3.3854 6.6765 -1.9314 31 1 1.9669 8.6737 -1.7605 32 1 0.7960 9.2003 0.3370 33 1 1.0240 7.7463 2.2827 34 1 -0.0105 5.7607 2.1518 35 1 5.1347 2.6009 -0.0108 36 1 3.7653 -0.7627 0.0002 37 1 5.1726 0.1549 -0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001203507943.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:13 Heat of formation + Delta-G solvation = 19.066829 kcal Electronic energy + Delta-G solvation = -22246.764099 eV Core-core repulsion = 18988.662125 eV Total energy + Delta-G solvation = -3258.101974 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.122 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.03057 -38.37226 -37.07391 -34.91328 -34.25651 -33.88980 -30.27812 -29.45031 -28.36225 -27.60608 -26.31251 -24.93623 -22.71349 -21.96570 -21.07298 -20.21055 -17.97895 -17.71225 -17.55634 -16.60902 -15.67560 -15.41939 -15.08056 -14.82279 -14.52516 -14.42388 -13.96190 -13.48276 -13.18865 -13.01463 -12.66017 -12.32933 -12.00178 -11.98646 -11.47252 -11.34073 -11.09043 -10.92555 -10.79874 -10.69494 -10.44602 -10.11261 -9.82234 -9.39440 -9.07249 -8.90745 -7.82585 -7.71762 -7.47094 -7.26594 -6.29395 -4.47037 2.02936 2.18515 2.70310 2.77260 3.12849 3.24196 3.32795 3.68976 3.96058 4.05564 4.42108 4.48140 4.62838 5.30425 5.37135 5.50455 5.66845 5.71723 5.79104 5.97182 6.01756 6.06983 6.15076 6.20981 6.46605 6.71379 6.86350 6.98212 7.09949 7.26275 7.45504 7.49820 7.66473 7.73837 7.88228 7.94417 8.03448 8.06615 8.13548 8.38137 8.46212 8.73259 8.78545 8.92699 9.90457 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.013359 B = 0.006800 C = 0.005548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2095.409613 B = 4116.856590 C = 5045.587045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 O -0.326 6.326 3 C 0.173 3.827 4 N -0.465 5.465 5 C 0.043 3.957 6 C 0.209 3.791 7 N -0.654 5.654 8 C -0.015 4.015 9 C -0.071 4.071 10 C -0.260 4.260 11 C -0.080 4.080 12 C -0.214 4.214 13 C 0.097 3.903 14 C -0.497 4.497 15 H 0.078 0.922 16 C 0.046 3.954 17 N -0.768 5.768 18 Si 1.056 2.944 19 H -0.273 1.273 20 H -0.276 1.276 21 H -0.273 1.273 22 C -0.226 4.226 23 C 0.196 3.804 24 N -0.873 5.873 25 H 0.050 0.950 26 H 0.083 0.917 27 H 0.052 0.948 28 H 0.154 0.846 29 H 0.389 0.611 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.103 0.897 34 H 0.301 0.699 35 H 0.128 0.872 36 H 0.400 0.600 37 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.513 -7.125 -3.305 9.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 O -0.235 6.235 3 C -0.011 4.011 4 N -0.185 5.185 5 C -0.120 4.120 6 C 0.102 3.898 7 N -0.275 5.275 8 C -0.109 4.109 9 C -0.091 4.091 10 C -0.280 4.280 11 C -0.098 4.098 12 C -0.233 4.233 13 C 0.093 3.907 14 C -0.524 4.524 15 H 0.096 0.904 16 C -0.180 4.180 17 N -0.389 5.389 18 Si 0.879 3.121 19 H -0.198 1.198 20 H -0.201 1.201 21 H -0.198 1.198 22 C -0.261 4.261 23 C 0.090 3.910 24 N -0.414 5.414 25 H 0.069 0.931 26 H 0.101 0.899 27 H 0.071 0.929 28 H 0.171 0.829 29 H 0.224 0.776 30 H 0.108 0.892 31 H 0.107 0.893 32 H 0.106 0.894 33 H 0.121 0.879 34 H 0.114 0.886 35 H 0.146 0.854 36 H 0.229 0.771 37 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 2.845 -7.360 -1.773 8.087 hybrid contribution 1.847 0.138 -1.542 2.410 sum 4.691 -7.222 -3.315 9.228 Atomic orbital electron populations 1.22592 0.78572 1.01373 1.02055 1.85998 1.21663 1.25029 1.90837 1.18880 0.87234 0.85104 1.09845 1.66995 1.39677 0.98232 1.13577 1.21680 0.91214 0.93037 1.06101 1.18509 0.92991 0.85486 0.92857 1.41010 1.06899 1.00871 1.78705 1.17147 1.08468 0.91741 0.93498 1.20720 0.97532 0.95279 0.95536 1.20099 1.08192 1.01548 0.98127 1.20372 0.97897 0.97796 0.93775 1.20755 1.07223 0.97080 0.98275 1.17742 0.90908 0.91462 0.90629 1.20356 1.07806 1.20999 1.03191 0.90387 1.26990 0.92453 0.91730 1.06829 1.70504 1.17781 1.25677 1.24900 0.83761 0.76977 0.77947 0.73388 1.19750 1.20098 1.19846 1.20102 0.99070 0.89252 1.17717 1.17336 0.87767 0.87539 0.98380 1.42149 1.07699 1.05300 1.86273 0.93136 0.89896 0.92879 0.82852 0.77603 0.89189 0.89280 0.89360 0.87937 0.88607 0.85436 0.77119 0.77928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.74 10.38 101.05 1.05 1.79 16 2 O -0.33 -5.63 9.74 -19.28 -0.19 -5.82 16 3 C 0.17 3.37 7.51 -16.95 -0.13 3.24 16 4 N -0.46 -9.98 9.20 -12.97 -0.12 -10.10 16 5 C 0.04 0.95 9.64 -17.28 -0.17 0.79 16 6 C 0.21 4.22 5.81 -83.59 -0.49 3.73 16 7 N -0.65 -12.92 4.79 -7.94 -0.04 -12.96 16 8 C -0.01 -0.33 4.85 -83.30 -0.40 -0.74 16 9 C -0.07 -1.50 9.96 -39.41 -0.39 -1.89 16 10 C -0.26 -5.51 10.03 -39.37 -0.40 -5.90 16 11 C -0.08 -1.76 9.96 -39.98 -0.40 -2.16 16 12 C -0.21 -5.16 8.16 -39.29 -0.32 -5.48 16 13 C 0.10 2.37 4.47 -106.63 -0.48 1.90 16 14 C -0.50 -12.40 7.36 -37.92 -0.28 -12.68 16 15 H 0.08 1.99 7.47 -52.49 -0.39 1.60 16 16 C 0.05 1.12 4.70 -17.33 -0.08 1.04 16 17 N -0.77 -19.59 12.44 55.55 0.69 -18.90 16 18 Si 1.06 21.47 30.04 -169.99 -5.11 16.36 16 19 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 20 H -0.28 -5.49 7.11 56.52 0.40 -5.08 16 21 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 22 C -0.23 -3.96 9.91 -38.92 -0.39 -4.34 16 23 C 0.20 3.39 6.80 -83.43 -0.57 2.83 16 24 N -0.87 -11.29 9.10 32.58 0.30 -10.99 16 25 H 0.05 0.75 8.10 -51.93 -0.42 0.33 16 26 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.05 0.84 8.10 -51.93 -0.42 0.42 16 28 H 0.15 3.77 6.49 -52.49 -0.34 3.43 16 29 H 0.39 6.68 8.85 -40.82 -0.36 6.32 16 30 H 0.09 1.73 8.06 -52.49 -0.42 1.30 16 31 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 32 H 0.09 1.74 8.06 -52.48 -0.42 1.32 16 33 H 0.10 2.56 6.68 -52.49 -0.35 2.21 16 34 H 0.30 7.89 7.26 -40.82 -0.30 7.59 16 35 H 0.13 1.85 8.06 -52.49 -0.42 1.43 16 36 H 0.40 4.78 8.21 -40.82 -0.34 4.45 16 37 H 0.39 4.02 8.86 -40.82 -0.36 3.66 16 LS Contribution 316.57 15.07 4.77 4.77 Total: -1.00 -27.50 316.57 -7.31 -34.82 By element: Atomic # 1 Polarization: 24.88 SS G_CDS: -4.19 Total: 20.69 kcal Atomic # 6 Polarization: -14.45 SS G_CDS: -3.43 Total: -17.88 kcal Atomic # 7 Polarization: -53.78 SS G_CDS: 0.83 Total: -52.95 kcal Atomic # 8 Polarization: -5.63 SS G_CDS: -0.19 Total: -5.82 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.11 Total: 16.36 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -27.50 -7.31 -34.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203507943.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.883 kcal (2) G-P(sol) polarization free energy of solvation -27.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds