Wall clock time and date at job start Tue Mar 31 2020 05:23:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35853 * 116.99979 * 2 1 4 4 N 1.32095 * 119.63778 * 0.02562 * 3 2 1 5 5 C 1.31988 * 121.79675 * 180.02562 * 4 3 2 6 6 C 1.38799 * 120.85950 * 359.97438 * 5 4 3 7 7 N 1.39789 * 120.40296 * 179.97438 * 6 5 4 8 8 C 1.38630 * 119.99840 * 4.31750 * 7 6 5 9 9 C 1.38838 * 120.29665 * 250.03574 * 8 7 6 10 10 C 1.38101 * 120.01690 * 180.30470 * 9 8 7 11 11 C 1.38939 * 120.63599 * 359.71500 * 10 9 8 12 12 C 1.36416 * 120.61411 * 0.02562 * 11 10 9 13 13 C 1.40751 * 119.95172 * 359.97438 * 12 11 10 14 14 C 1.41000 * 120.30921 * 180.02562 * 13 12 11 15 15 H 1.08001 * 119.99600 * 203.25672 * 14 13 12 16 16 C 1.39889 * 120.00268 * 23.25736 * 14 13 12 17 17 N 1.30900 * 119.99768 * 34.20186 * 16 14 13 18 18 Si 1.86806 * 120.00344 * 214.20048 * 16 14 13 19 19 H 1.48492 * 109.47059 * 180.02562 * 18 16 14 20 20 H 1.48505 * 109.46852 * 300.00021 * 18 16 14 21 21 H 1.48500 * 109.46879 * 59.99968 * 18 16 14 22 22 C 1.39390 * 119.19190 * 0.25172 * 6 5 4 23 23 C 1.38864 * 118.35710 * 359.51168 * 22 6 5 24 24 N 1.39947 * 120.46603 * 180.23885 * 23 22 6 25 25 H 1.09004 * 109.46732 * 59.99606 * 1 2 3 26 26 H 1.08996 * 109.47492 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47421 * 300.00575 * 1 2 3 28 28 H 1.07998 * 119.57102 * 179.97438 * 5 4 3 29 29 H 0.96996 * 120.00151 * 184.31833 * 7 6 5 30 30 H 1.07999 * 119.99355 * 359.97438 * 9 8 7 31 31 H 1.07997 * 119.68242 * 179.74026 * 10 9 8 32 32 H 1.08003 * 119.69400 * 180.02562 * 11 10 9 33 33 H 1.07998 * 120.02840 * 180.02562 * 12 11 10 34 34 H 0.96999 * 120.00097 * 3.92648 * 17 16 14 35 35 H 1.08000 * 120.82050 * 179.72898 * 22 6 5 36 36 H 0.96997 * 119.99850 * 180.25577 * 24 23 22 37 37 H 0.96997 * 119.99806 * 0.25462 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2105 0.0000 4 7 1.3194 2.3137 0.0005 5 6 1.8738 3.5115 0.0000 6 6 3.2542 3.6570 -0.0005 7 7 3.8313 4.9302 -0.0015 8 6 3.0271 6.0558 0.0883 9 6 2.8754 6.8974 -1.0055 10 6 2.0778 8.0206 -0.9076 11 6 1.4163 8.3181 0.2774 12 6 1.5428 7.5063 1.3664 13 6 2.3492 6.3549 1.2947 14 6 2.4850 5.5103 2.4155 15 1 3.3501 4.8705 2.5079 16 6 1.4991 5.5010 3.4079 17 7 0.2432 5.6792 3.0845 18 14 1.9746 5.2344 5.1946 19 1 0.7554 5.2678 6.0416 20 1 2.6403 3.9147 5.3380 21 1 2.9061 6.3081 5.6244 22 6 4.0579 2.5182 -0.0059 23 6 3.4398 1.2747 -0.0001 24 7 4.2041 0.1024 -0.0001 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.2453 4.3898 0.0001 29 1 4.7944 5.0261 -0.0652 30 1 3.3854 6.6765 -1.9314 31 1 1.9669 8.6737 -1.7605 32 1 0.7960 9.2003 0.3370 33 1 1.0240 7.7463 2.2827 34 1 -0.0105 5.7607 2.1518 35 1 5.1347 2.6009 -0.0108 36 1 3.7653 -0.7627 0.0002 37 1 5.1726 0.1549 -0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001203507943.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:13 Heat of formation + Delta-G solvation = 0.150321 kcal Electronic energy + Delta-G solvation = -22247.584380 eV Core-core repulsion = 18988.662125 eV Total energy + Delta-G solvation = -3258.922256 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.122 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.51532 -40.02111 -38.54853 -36.37709 -35.83803 -35.58182 -31.82443 -31.24587 -29.77229 -29.16078 -27.71847 -26.73827 -24.17634 -23.50563 -22.85668 -21.87139 -19.77445 -19.12187 -18.98564 -18.10416 -17.18806 -16.81288 -16.48454 -16.40186 -16.16563 -16.07237 -15.61603 -14.84909 -14.74123 -14.46945 -14.21178 -14.07356 -13.78554 -13.54109 -13.16817 -12.68136 -12.60110 -12.55068 -12.35531 -12.12797 -12.03371 -11.75327 -11.53380 -11.03161 -10.70313 -10.60603 -9.52301 -9.51119 -9.24920 -8.76899 -7.82043 -6.33797 0.55145 0.63827 0.96739 0.99898 1.45800 1.60595 1.73233 2.28609 2.34685 2.62699 2.71819 3.08017 3.09565 3.57179 3.79504 4.22121 4.24898 4.40226 4.46589 4.48461 4.56401 4.58318 4.66795 4.81271 4.83656 5.03563 5.19358 5.30210 5.41055 5.51176 5.66312 5.82608 5.92262 6.07033 6.23250 6.25161 6.36544 6.57473 6.67178 6.83983 6.95254 7.06031 7.18127 7.29904 7.98989 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.013359 B = 0.006800 C = 0.005548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2095.409613 B = 4116.856590 C = 5045.587045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 O -0.324 6.324 3 C 0.160 3.840 4 N -0.486 5.486 5 C 0.008 3.992 6 C 0.203 3.797 7 N -0.651 5.651 8 C -0.007 4.007 9 C -0.079 4.079 10 C -0.252 4.252 11 C -0.087 4.087 12 C -0.236 4.236 13 C 0.077 3.923 14 C -0.519 4.519 15 H 0.067 0.933 16 C 0.012 3.988 17 N -0.793 5.793 18 Si 1.100 2.900 19 H -0.272 1.272 20 H -0.267 1.267 21 H -0.260 1.260 22 C -0.221 4.221 23 C 0.207 3.793 24 N -0.849 5.849 25 H 0.043 0.957 26 H 0.126 0.874 27 H 0.034 0.966 28 H 0.117 0.883 29 H 0.404 0.596 30 H 0.116 0.884 31 H 0.119 0.881 32 H 0.110 0.890 33 H 0.083 0.917 34 H 0.284 0.716 35 H 0.164 0.836 36 H 0.409 0.591 37 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.569 -8.469 -4.083 11.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 O -0.233 6.233 3 C -0.026 4.026 4 N -0.207 5.207 5 C -0.154 4.154 6 C 0.096 3.904 7 N -0.274 5.274 8 C -0.102 4.102 9 C -0.099 4.099 10 C -0.271 4.271 11 C -0.105 4.105 12 C -0.256 4.256 13 C 0.073 3.927 14 C -0.546 4.546 15 H 0.085 0.915 16 C -0.208 4.208 17 N -0.414 5.414 18 Si 0.918 3.082 19 H -0.197 1.197 20 H -0.192 1.192 21 H -0.185 1.185 22 C -0.256 4.256 23 C 0.098 3.902 24 N -0.392 5.392 25 H 0.062 0.938 26 H 0.144 0.856 27 H 0.053 0.947 28 H 0.134 0.866 29 H 0.241 0.759 30 H 0.134 0.866 31 H 0.137 0.863 32 H 0.128 0.872 33 H 0.102 0.898 34 H 0.095 0.905 35 H 0.181 0.819 36 H 0.239 0.761 37 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 4.943 -8.724 -2.569 10.351 hybrid contribution 1.231 0.452 -1.491 1.986 sum 6.174 -8.272 -4.060 11.092 Atomic orbital electron populations 1.22788 0.77358 1.03779 1.00874 1.86003 1.22840 1.23793 1.90644 1.19272 0.88417 0.85159 1.09758 1.66840 1.40845 0.98657 1.14339 1.21192 0.91914 0.92358 1.09890 1.18524 0.92469 0.86325 0.93093 1.40897 1.07331 1.00201 1.79004 1.17317 1.07570 0.92237 0.93047 1.21047 0.97626 0.95077 0.96140 1.20509 1.06613 1.01530 0.98464 1.20652 0.98106 0.98198 0.93544 1.20745 1.08220 0.98052 0.98555 1.18023 0.91547 0.91608 0.91520 1.20281 1.07819 1.21975 1.04491 0.91528 1.28139 0.91969 0.90645 1.10014 1.70608 1.18521 1.28701 1.23562 0.83221 0.76939 0.78547 0.69465 1.19671 1.19173 1.18450 1.20389 1.00540 0.88180 1.16483 1.17432 0.87404 0.88920 0.96452 1.42096 1.08525 1.04254 1.84305 0.93773 0.85634 0.94671 0.86590 0.75908 0.86616 0.86298 0.87194 0.89833 0.90464 0.81869 0.76121 0.75820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.36 10.38 113.37 1.18 2.53 16 2 O -0.32 -10.70 9.74 -91.90 -0.89 -11.59 16 3 C 0.16 6.09 7.51 84.97 0.64 6.73 16 4 N -0.49 -21.42 9.20 -307.79 -2.83 -24.26 16 5 C 0.01 0.37 9.64 84.80 0.82 1.19 16 6 C 0.20 8.13 5.81 38.28 0.22 8.36 16 7 N -0.65 -25.38 4.79 -179.04 -0.86 -26.23 16 8 C -0.01 -0.33 4.85 39.03 0.19 -0.14 16 9 C -0.08 -3.26 9.96 22.38 0.22 -3.04 16 10 C -0.25 -10.28 10.03 22.41 0.22 -10.05 16 11 C -0.09 -3.82 9.96 22.01 0.22 -3.60 16 12 C -0.24 -11.80 8.16 22.46 0.18 -11.61 16 13 C 0.08 3.91 4.47 -21.17 -0.09 3.81 16 14 C -0.52 -26.86 7.36 23.35 0.17 -26.69 16 15 H 0.07 3.50 7.47 -2.91 -0.02 3.48 16 16 C 0.01 0.63 4.70 85.23 0.40 1.03 16 17 N -0.79 -42.73 12.44 21.82 0.27 -42.45 16 18 Si 1.10 44.21 30.04 68.60 2.06 46.27 16 19 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 20 H -0.27 -10.24 7.11 99.48 0.71 -9.53 16 21 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 22 C -0.22 -7.22 9.91 22.70 0.22 -6.99 16 23 C 0.21 6.68 6.80 38.31 0.26 6.94 16 24 N -0.85 -18.83 9.10 -50.84 -0.46 -19.29 16 25 H 0.04 1.31 8.10 -2.38 -0.02 1.29 16 26 H 0.13 2.48 8.14 -2.39 -0.02 2.46 16 27 H 0.03 1.12 8.10 -2.39 -0.02 1.10 16 28 H 0.12 6.14 6.49 -2.91 -0.02 6.12 16 29 H 0.40 13.20 8.85 -92.71 -0.82 12.38 16 30 H 0.12 4.15 8.06 -2.91 -0.02 4.13 16 31 H 0.12 4.14 8.06 -2.91 -0.02 4.11 16 32 H 0.11 4.26 8.06 -2.91 -0.02 4.24 16 33 H 0.08 4.41 6.68 -2.91 -0.02 4.39 16 34 H 0.28 16.02 7.26 -92.71 -0.67 15.35 16 35 H 0.16 4.07 8.06 -2.91 -0.02 4.05 16 36 H 0.41 8.24 8.21 -92.71 -0.76 7.48 16 37 H 0.41 6.57 8.86 -92.71 -0.82 5.75 16 Total: -1.00 -62.42 316.57 0.98 -61.44 By element: Atomic # 1 Polarization: 48.80 SS G_CDS: -1.17 Total: 47.64 kcal Atomic # 6 Polarization: -36.37 SS G_CDS: 4.86 Total: -31.52 kcal Atomic # 7 Polarization: -108.35 SS G_CDS: -3.88 Total: -112.24 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: -0.89 Total: -11.59 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.06 Total: 46.27 kcal Total: -62.42 0.98 -61.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203507943.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.590 kcal (2) G-P(sol) polarization free energy of solvation -62.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds