Wall clock time and date at job start Tue Mar 31 2020 05:23:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35870 * 116.99510 * 2 1 4 4 N 1.32069 * 119.65050 * 359.97438 * 3 2 1 5 5 C 1.32016 * 121.79757 * 180.02562 * 4 3 2 6 6 C 1.38717 * 120.86552 * 0.02562 * 5 4 3 7 7 N 1.39981 * 120.40040 * 179.71806 * 6 5 4 8 8 C 1.39691 * 120.00281 * 154.91269 * 7 6 5 9 9 C 1.39359 * 119.95642 * 328.15759 * 8 7 6 10 10 C 1.38465 * 120.42550 * 179.71573 * 9 8 7 11 11 C 1.37701 * 120.32643 * 0.55467 * 10 9 8 12 12 C 1.40752 * 119.89315 * 359.72275 * 11 10 9 13 13 C 1.41410 * 120.20398 * 179.97438 * 12 11 10 14 14 H 1.08002 * 120.00037 * 207.52491 * 13 12 11 15 15 C 1.39928 * 120.00071 * 27.52662 * 13 12 11 16 16 N 1.30829 * 119.99849 * 12.26959 * 15 13 12 17 17 Si 1.86797 * 119.99864 * 192.26551 * 15 13 12 18 18 H 1.48499 * 109.47302 * 60.00275 * 17 15 13 19 19 H 1.48510 * 109.46866 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47254 * 299.99784 * 17 15 13 21 21 C 1.38302 * 119.95335 * 148.42492 * 8 7 6 22 22 C 1.39330 * 119.20110 * 0.02562 * 6 5 4 23 23 C 1.38891 * 118.36095 * 359.97438 * 22 6 5 24 24 N 1.39963 * 120.46538 * 179.97438 * 23 22 6 25 25 H 1.09000 * 109.47039 * 60.00245 * 1 2 3 26 26 H 1.09008 * 109.47100 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47542 * 300.00053 * 1 2 3 28 28 H 1.07992 * 119.56624 * 179.97438 * 5 4 3 29 29 H 0.96999 * 119.99351 * 334.92520 * 7 6 5 30 30 H 1.08004 * 119.78851 * 359.97438 * 9 8 7 31 31 H 1.08001 * 119.83909 * 180.25436 * 10 9 8 32 32 H 1.08001 * 120.05054 * 179.70071 * 11 10 9 33 33 H 0.97002 * 119.99658 * 180.02562 * 16 15 13 34 34 H 1.07997 * 120.16701 * 359.97438 * 21 8 7 35 35 H 1.08001 * 120.81334 * 179.97438 * 22 6 5 36 36 H 0.96995 * 119.99860 * 180.02562 * 24 23 22 37 37 H 0.97001 * 119.99713 * 0.02956 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2107 0.0000 4 7 1.3196 2.3138 -0.0005 5 6 1.8743 3.5118 -0.0010 6 6 3.2539 3.6572 -0.0016 7 7 3.8318 4.9321 -0.0081 8 6 5.1179 5.1187 0.5040 9 6 5.5689 4.3264 1.5581 10 6 6.8441 4.4991 2.0694 11 6 7.6771 5.4641 1.5488 12 6 7.2335 6.2757 0.4879 13 6 8.0833 7.2691 -0.0513 14 1 7.6603 8.1494 -0.5124 15 6 9.4722 7.1116 0.0126 16 7 9.9847 5.9550 0.3464 17 14 10.5946 8.5525 -0.3789 18 1 10.3163 9.6668 0.5625 19 1 12.0111 8.1286 -0.2401 20 1 10.3488 9.0075 -1.7710 21 6 5.9400 6.0931 -0.0320 22 6 4.0574 2.5189 -0.0022 23 6 3.4394 1.2751 -0.0016 24 7 4.2040 0.1028 -0.0026 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.2459 4.3900 -0.0019 29 1 3.3389 5.6861 -0.3681 30 1 4.9211 3.5701 1.9762 31 1 7.1854 3.8771 2.8836 32 1 8.6692 5.5981 1.9542 33 1 10.9475 5.8460 0.3910 34 1 5.5904 6.7104 -0.8463 35 1 5.1342 2.6019 -0.0030 36 1 3.7654 -0.7623 -0.0026 37 1 5.1726 0.1555 -0.0033 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001203508990.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:15 Heat of formation + Delta-G solvation = 3.502170 kcal Electronic energy + Delta-G solvation = -21265.422746 eV Core-core repulsion = 18006.645837 eV Total energy + Delta-G solvation = -3258.776908 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.122 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.66390 -39.93621 -38.61907 -36.72306 -35.97636 -34.93242 -31.91841 -31.35901 -30.21506 -28.99877 -27.52996 -27.17253 -24.21796 -23.68299 -22.55929 -22.03650 -19.47453 -19.19745 -18.69550 -18.21259 -17.25156 -16.88408 -16.72986 -16.47669 -16.25470 -16.11052 -15.21271 -14.96860 -14.69166 -14.51165 -14.27189 -14.04003 -13.72961 -13.40511 -13.20186 -12.84300 -12.74296 -12.59360 -12.30585 -12.24357 -12.06661 -11.80568 -11.44706 -11.25271 -11.02148 -10.71335 -9.71389 -9.37068 -8.63248 -8.53076 -7.87456 -6.35748 0.34151 0.42780 1.00008 1.25397 1.40446 1.51284 1.56524 2.21371 2.24803 2.51149 2.76457 2.89804 2.96903 3.65410 3.76354 4.07645 4.13513 4.40168 4.45597 4.54319 4.59052 4.64952 4.65960 4.85199 5.06523 5.10197 5.14131 5.19033 5.32198 5.41275 5.53822 5.88724 5.95881 6.13564 6.18861 6.22570 6.49157 6.60243 6.78235 6.86822 6.94442 6.97245 7.02614 7.10416 8.38010 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.037134 B = 0.003391 C = 0.003248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.843711 B = 8256.041685 C = 8618.037890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.324 6.324 3 C 0.192 3.808 4 N -0.477 5.477 5 C 0.010 3.990 6 C 0.167 3.833 7 N -0.672 5.672 8 C 0.195 3.805 9 C -0.262 4.262 10 C -0.086 4.086 11 C -0.203 4.203 12 C 0.103 3.897 13 C -0.499 4.499 14 H 0.075 0.925 15 C 0.034 3.966 16 N -0.828 5.828 17 Si 0.982 3.018 18 H -0.261 1.261 19 H -0.269 1.269 20 H -0.261 1.261 21 C -0.268 4.268 22 C -0.197 4.197 23 C 0.196 3.804 24 N -0.854 5.854 25 H 0.050 0.950 26 H 0.120 0.880 27 H 0.049 0.951 28 H 0.175 0.825 29 H 0.415 0.585 30 H 0.106 0.894 31 H 0.110 0.890 32 H 0.102 0.898 33 H 0.286 0.714 34 H 0.100 0.900 35 H 0.132 0.868 36 H 0.411 0.589 37 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.442 -8.565 -0.860 14.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.233 6.233 3 C 0.006 3.994 4 N -0.199 5.199 5 C -0.150 4.150 6 C 0.064 3.936 7 N -0.296 5.296 8 C 0.099 3.901 9 C -0.283 4.283 10 C -0.105 4.105 11 C -0.223 4.223 12 C 0.100 3.900 13 C -0.529 4.529 14 H 0.094 0.906 15 C -0.180 4.180 16 N -0.455 5.455 17 Si 0.803 3.197 18 H -0.185 1.185 19 H -0.193 1.193 20 H -0.186 1.186 21 C -0.291 4.291 22 C -0.232 4.232 23 C 0.086 3.914 24 N -0.395 5.395 25 H 0.069 0.931 26 H 0.138 0.862 27 H 0.068 0.932 28 H 0.192 0.808 29 H 0.252 0.748 30 H 0.124 0.876 31 H 0.128 0.872 32 H 0.120 0.880 33 H 0.097 0.903 34 H 0.118 0.882 35 H 0.150 0.850 36 H 0.242 0.758 37 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -11.978 -9.064 -0.792 15.041 hybrid contribution 1.466 0.818 -0.287 1.703 sum -10.512 -8.246 -1.080 13.403 Atomic orbital electron populations 1.22910 0.76497 1.04078 1.01695 1.86075 1.23623 1.23615 1.90004 1.19186 0.87657 0.85644 1.06943 1.67013 1.39587 0.98264 1.15009 1.21916 0.90290 0.94367 1.08454 1.18530 0.92774 0.85492 0.96819 1.41907 1.14714 1.07096 1.65925 1.17385 0.84230 0.96032 0.92450 1.20339 0.97920 1.07646 1.02434 1.20757 0.93684 0.97288 0.98728 1.21281 1.00225 1.01021 0.99798 1.17725 0.91273 0.91451 0.89559 1.19798 0.91765 1.05768 1.35566 0.90648 1.26714 1.00103 0.98834 0.92351 1.69867 1.14610 1.24728 1.36270 0.85255 0.76603 0.78097 0.79756 1.18487 1.19340 1.18550 1.20839 0.96601 1.06472 1.05191 1.20712 1.00469 0.89657 1.12324 1.17586 0.88093 0.88445 0.97245 1.42247 1.08682 1.04716 1.83869 0.93089 0.86201 0.93182 0.80781 0.74756 0.87636 0.87170 0.87995 0.90301 0.88168 0.85017 0.75832 0.76301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.81 10.38 113.37 1.18 1.99 16 2 O -0.32 -8.18 9.74 -92.09 -0.90 -9.07 16 3 C 0.19 5.63 7.51 84.96 0.64 6.27 16 4 N -0.48 -14.11 9.20 -307.87 -2.83 -16.94 16 5 C 0.01 0.29 11.09 84.78 0.94 1.23 16 6 C 0.17 5.38 6.07 38.22 0.23 5.61 16 7 N -0.67 -22.77 5.47 -180.32 -0.99 -23.75 16 8 C 0.19 8.21 5.94 38.17 0.23 8.44 16 9 C -0.26 -11.16 7.77 22.59 0.18 -10.98 16 10 C -0.09 -3.91 10.01 22.20 0.22 -3.69 16 11 C -0.20 -10.54 8.67 22.76 0.20 -10.34 16 12 C 0.10 5.46 5.56 -21.31 -0.12 5.34 16 13 C -0.50 -26.57 9.06 23.46 0.21 -26.35 16 14 H 0.08 3.85 7.88 -2.91 -0.02 3.83 16 15 C 0.03 1.71 5.23 85.25 0.45 2.16 16 16 N -0.83 -43.00 10.84 21.82 0.24 -42.76 16 17 Si 0.98 37.91 29.58 68.60 2.03 39.94 16 18 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 19 H -0.27 -9.85 7.11 99.48 0.71 -9.15 16 20 H -0.26 -9.79 7.11 99.48 0.71 -9.09 16 21 C -0.27 -12.75 9.70 22.86 0.22 -12.53 16 22 C -0.20 -6.50 7.84 22.69 0.18 -6.32 16 23 C 0.20 5.73 6.80 38.31 0.26 5.99 16 24 N -0.85 -19.40 9.10 -50.83 -0.46 -19.87 16 25 H 0.05 0.98 8.10 -2.39 -0.02 0.96 16 26 H 0.12 1.44 8.14 -2.38 -0.02 1.42 16 27 H 0.05 0.97 8.10 -2.39 -0.02 0.95 16 28 H 0.18 4.01 8.06 -2.91 -0.02 3.99 16 29 H 0.41 11.88 8.90 -92.71 -0.82 11.06 16 30 H 0.11 4.21 6.57 -2.91 -0.02 4.19 16 31 H 0.11 4.45 8.06 -2.91 -0.02 4.43 16 32 H 0.10 5.57 6.17 -2.91 -0.02 5.55 16 33 H 0.29 13.51 8.30 -92.71 -0.77 12.74 16 34 H 0.10 4.51 8.06 -2.91 -0.02 4.48 16 35 H 0.13 4.80 6.42 -2.91 -0.02 4.78 16 36 H 0.41 7.89 8.21 -92.71 -0.76 7.13 16 37 H 0.41 8.32 8.86 -92.71 -0.82 7.50 16 Total: -1.00 -60.84 316.69 0.83 -60.00 By element: Atomic # 1 Polarization: 46.92 SS G_CDS: -1.26 Total: 45.65 kcal Atomic # 6 Polarization: -38.21 SS G_CDS: 5.01 Total: -33.20 kcal Atomic # 7 Polarization: -99.27 SS G_CDS: -4.05 Total: -103.32 kcal Atomic # 8 Polarization: -8.18 SS G_CDS: -0.90 Total: -9.07 kcal Atomic # 14 Polarization: 37.91 SS G_CDS: 2.03 Total: 39.94 kcal Total: -60.84 0.83 -60.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203508990.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.505 kcal (2) G-P(sol) polarization free energy of solvation -60.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds