Wall clock time and date at job start Tue Mar 31 2020 05:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47299 * 2 1 4 4 C 1.53005 * 109.47124 * 119.99972 * 2 1 3 5 5 N 1.46900 * 109.47260 * 179.38650 * 4 2 1 6 6 C 1.46897 * 111.00148 * 156.71943 * 5 4 2 7 7 C 1.50708 * 109.46890 * 288.17774 * 6 5 4 8 8 H 1.08001 * 119.99963 * 4.89729 * 7 6 5 9 9 C 1.37876 * 119.99779 * 184.89465 * 7 6 5 10 10 N 1.31511 * 120.00061 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99598 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.47497 * 0.02562 * 11 9 7 13 13 H 1.48505 * 109.46754 * 120.00245 * 11 9 7 14 14 H 1.48496 * 109.47156 * 240.00127 * 11 9 7 15 15 C 1.46903 * 110.99871 * 280.67385 * 5 4 2 16 16 C 1.50697 * 109.47501 * 78.47649 * 15 5 4 17 17 N 1.30851 * 125.89210 * 255.76313 * 16 15 5 18 18 N 1.40088 * 108.22337 * 180.13620 * 17 16 15 19 19 C 1.46501 * 126.03854 * 179.87630 * 18 17 16 20 20 C 1.35046 * 107.92323 * 359.61290 * 18 17 16 21 21 C 1.35369 * 107.72985 * 0.22771 * 20 18 17 22 22 Cl 1.73603 * 126.04644 * 179.97438 * 21 20 18 23 23 H 1.09004 * 109.46785 * 299.99734 * 1 2 3 24 24 H 1.08996 * 109.46858 * 59.99529 * 1 2 3 25 25 H 1.08996 * 109.46968 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47204 * 240.00004 * 2 1 3 27 27 H 1.08994 * 109.47404 * 304.89422 * 3 2 1 28 28 H 1.09007 * 109.46802 * 64.89023 * 3 2 1 29 29 H 1.08999 * 109.47298 * 184.89063 * 3 2 1 30 30 H 1.09006 * 109.46748 * 59.38685 * 4 2 1 31 31 H 1.08996 * 109.47413 * 299.39225 * 4 2 1 32 32 H 1.09002 * 109.47227 * 48.17131 * 6 5 4 33 33 H 1.08998 * 109.47323 * 168.17589 * 6 5 4 34 34 H 0.97006 * 119.99784 * 180.02562 * 10 9 7 35 35 H 1.08998 * 109.46948 * 318.47331 * 15 5 4 36 36 H 1.08998 * 109.46755 * 198.48081 * 15 5 4 37 37 H 1.08999 * 109.46842 * 269.68849 * 19 18 17 38 38 H 1.09004 * 109.46626 * 29.68824 * 19 18 17 39 39 H 1.08993 * 109.47180 * 149.68528 * 19 18 17 40 40 H 1.08001 * 126.13029 * 180.20923 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5090 -0.7341 1.2419 6 6 4.0409 -0.8944 2.6018 7 6 3.8221 0.3777 3.3798 8 1 3.2670 1.1921 2.9382 9 6 4.3305 0.5016 4.6554 10 7 5.0068 -0.4900 5.1930 11 14 4.0599 2.0785 5.6195 12 1 3.2745 3.0332 4.7968 13 1 3.3163 1.7738 6.8683 14 1 5.3733 2.6820 5.9601 15 6 4.0218 -1.7820 0.3492 16 6 3.9338 -1.3120 -1.0799 17 7 3.0471 -1.6981 -1.9613 18 7 3.3087 -1.0332 -3.1662 19 6 2.5533 -1.1792 -4.4129 20 6 4.3768 -0.2295 -2.9740 21 6 4.7827 -0.3830 -1.6917 22 17 6.1204 0.4286 -0.9395 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.6070 1.9810 -0.8428 28 1 1.7500 1.9304 0.9306 29 1 3.1265 1.4437 -0.0876 30 1 1.6677 -1.7457 1.2547 31 1 1.6857 -0.2012 2.1392 32 1 3.5265 -1.7171 3.0986 33 1 5.1080 -1.1105 2.5514 34 1 5.3642 -0.4029 6.0906 35 1 3.4263 -2.6868 0.4714 36 1 5.0613 -1.9949 0.5984 37 1 2.9915 -1.9775 -5.0119 38 1 1.5165 -1.4249 -4.1827 39 1 2.5896 -0.2440 -4.9714 40 1 4.8267 0.4190 -3.7111 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205083458.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:57 Heat of formation + Delta-G solvation = 75.941396 kcal Electronic energy + Delta-G solvation = -21456.250075 eV Core-core repulsion = 18334.014612 eV Total energy + Delta-G solvation = -3122.235463 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.130 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.19095 -37.36763 -35.94907 -33.98630 -33.33403 -32.14920 -29.96958 -28.33057 -26.67461 -26.51703 -25.36245 -23.60792 -21.14544 -20.81200 -19.72010 -19.12849 -17.05801 -16.16106 -15.71425 -14.98734 -14.66968 -14.34401 -14.12175 -14.02372 -13.66737 -13.21477 -12.93800 -12.84493 -12.52279 -12.26953 -12.03463 -11.67098 -11.42256 -11.32429 -11.19655 -11.08421 -10.85005 -10.72553 -10.59078 -10.30221 -10.18035 -10.05002 -9.90069 -9.63815 -9.19709 -8.76955 -8.35149 -8.11575 -7.16337 -5.94129 -3.93536 1.84468 2.22145 2.79400 3.07807 3.36592 3.44133 3.49507 4.49149 4.54554 4.76942 4.96180 5.00670 5.17021 5.23854 5.42310 5.46786 5.56464 5.62078 5.74981 5.89232 6.07263 6.09414 6.15772 6.24160 6.40549 6.43598 6.57753 6.60476 6.67658 6.73983 6.92499 7.11789 7.14325 7.35674 7.41133 7.76124 7.91420 8.18479 8.31620 8.62590 9.14330 9.69718 11.16755 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.018805 B = 0.005769 C = 0.005090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.594036 B = 4852.388684 C = 5499.487994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.110 4.110 3 C -0.127 4.127 4 C 0.070 3.930 5 N -0.519 5.519 6 C 0.196 3.804 7 C -0.495 4.495 8 H 0.064 0.936 9 C 0.055 3.945 10 N -0.900 5.900 11 Si 0.893 3.107 12 H -0.272 1.272 13 H -0.287 1.287 14 H -0.285 1.285 15 C 0.126 3.874 16 C 0.122 3.878 17 N -0.285 5.285 18 N -0.377 5.377 19 C 0.108 3.892 20 C 0.055 3.945 21 C -0.158 4.158 22 Cl -0.032 7.032 23 H 0.050 0.950 24 H 0.042 0.958 25 H 0.045 0.955 26 H 0.084 0.916 27 H 0.025 0.975 28 H 0.047 0.953 29 H 0.069 0.931 30 H 0.018 0.982 31 H 0.080 0.920 32 H -0.012 1.012 33 H 0.035 0.965 34 H 0.259 0.741 35 H 0.043 0.957 36 H 0.090 0.910 37 H 0.072 0.928 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.572 -0.528 -18.726 19.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.129 4.129 3 C -0.184 4.184 4 C -0.058 4.058 5 N -0.243 5.243 6 C 0.071 3.929 7 C -0.534 4.534 8 H 0.082 0.918 9 C -0.146 4.146 10 N -0.540 5.540 11 Si 0.722 3.278 12 H -0.197 1.197 13 H -0.213 1.213 14 H -0.211 1.211 15 C -0.005 4.005 16 C -0.045 4.045 17 N -0.109 5.109 18 N -0.159 5.159 19 C -0.033 4.033 20 C -0.092 4.092 21 C -0.197 4.197 22 Cl -0.003 7.003 23 H 0.069 0.931 24 H 0.061 0.939 25 H 0.064 0.936 26 H 0.102 0.898 27 H 0.045 0.955 28 H 0.066 0.934 29 H 0.088 0.912 30 H 0.036 0.964 31 H 0.098 0.902 32 H 0.006 0.994 33 H 0.053 0.947 34 H 0.069 0.931 35 H 0.061 0.939 36 H 0.108 0.892 37 H 0.091 0.909 38 H 0.107 0.893 39 H 0.104 0.896 40 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -4.285 -0.808 -19.039 19.532 hybrid contribution 0.414 0.732 0.994 1.302 sum -3.871 -0.076 -18.044 18.455 Atomic orbital electron populations 1.21773 0.96796 1.00599 1.00677 1.21479 0.93795 0.97475 1.00121 1.21596 1.02376 0.95025 0.99398 1.22114 0.88302 0.97394 0.98023 1.61911 1.06736 1.43611 1.12073 1.19768 0.95245 0.96434 0.81420 1.21173 1.33549 1.00509 0.98134 0.91752 1.24945 0.95474 0.96446 0.97716 1.69966 1.37017 1.31428 1.15634 0.86510 0.77810 0.83728 0.79788 1.19700 1.21307 1.21150 1.20502 1.01540 0.93196 0.85237 1.22397 0.91152 0.94391 0.96528 1.77387 1.22493 1.20596 0.90389 1.48157 1.24031 1.33613 1.10133 1.21803 0.97096 1.02990 0.81450 1.22093 0.91751 0.97981 0.97351 1.20633 0.99793 1.05998 0.93265 1.98347 1.42729 1.77807 1.81461 0.93114 0.93866 0.93562 0.89794 0.95548 0.93368 0.91200 0.96360 0.90206 0.99410 0.94701 0.93144 0.93924 0.89186 0.90915 0.89275 0.89630 0.80632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 9.19 37.16 0.34 -1.80 16 2 C -0.11 -1.92 2.65 -90.62 -0.24 -2.16 16 3 C -0.13 -2.28 8.97 37.16 0.33 -1.95 16 4 C 0.07 1.41 4.26 -3.82 -0.02 1.39 16 5 N -0.52 -11.06 3.70 -237.51 -0.88 -11.94 16 6 C 0.20 5.01 4.71 -4.97 -0.02 4.99 16 7 C -0.49 -13.74 8.39 -34.44 -0.29 -14.03 16 8 H 0.06 1.80 7.58 -52.49 -0.40 1.40 16 9 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 10 N -0.90 -26.71 13.29 55.43 0.74 -25.98 16 11 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 12 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 13 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 14 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 15 C 0.13 2.38 5.44 -4.98 -0.03 2.35 16 16 C 0.12 2.08 4.95 -82.38 -0.41 1.68 16 17 N -0.29 -4.53 10.49 33.68 0.35 -4.18 16 18 N -0.38 -4.67 4.02 -68.12 -0.27 -4.94 16 19 C 0.11 0.79 11.47 59.85 0.69 1.47 16 20 C 0.05 0.68 11.47 -17.16 -0.20 0.49 16 21 C -0.16 -2.48 6.64 -39.97 -0.27 -2.74 16 22 Cl -0.03 -0.52 29.14 -51.86 -1.51 -2.03 16 23 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 24 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.08 1.48 4.00 -51.93 -0.21 1.27 16 27 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.07 1.39 7.78 -51.93 -0.40 0.99 16 30 H 0.02 0.36 7.62 -51.93 -0.40 -0.03 16 31 H 0.08 1.76 6.95 -51.93 -0.36 1.40 16 32 H -0.01 -0.32 8.05 -51.93 -0.42 -0.74 16 33 H 0.03 0.95 7.66 -51.93 -0.40 0.56 16 34 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 35 H 0.04 0.79 7.63 -51.93 -0.40 0.40 16 36 H 0.09 1.71 7.60 -51.93 -0.39 1.32 16 37 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.18 1.52 8.06 -52.49 -0.42 1.10 16 LS Contribution 341.47 15.07 5.15 5.15 Total: -1.00 -31.21 341.47 -7.96 -39.18 By element: Atomic # 1 Polarization: 3.04 SS G_CDS: -6.31 Total: -3.27 kcal Atomic # 6 Polarization: -8.65 SS G_CDS: -0.20 Total: -8.86 kcal Atomic # 7 Polarization: -46.98 SS G_CDS: -0.06 Total: -47.04 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -1.51 Total: -2.03 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.21 -7.96 -39.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205083458.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.118 kcal (2) G-P(sol) polarization free energy of solvation -31.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds