Wall clock time and date at job start Tue Mar 31 2020 05:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47299 * 2 1 4 4 C 1.53005 * 109.47124 * 119.99972 * 2 1 3 5 5 N 1.46900 * 109.47260 * 179.38650 * 4 2 1 6 6 C 1.46897 * 111.00148 * 156.71943 * 5 4 2 7 7 C 1.50708 * 109.46890 * 288.17774 * 6 5 4 8 8 H 1.08001 * 119.99963 * 4.89729 * 7 6 5 9 9 C 1.37876 * 119.99779 * 184.89465 * 7 6 5 10 10 N 1.31511 * 120.00061 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99598 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.47497 * 0.02562 * 11 9 7 13 13 H 1.48505 * 109.46754 * 120.00245 * 11 9 7 14 14 H 1.48496 * 109.47156 * 240.00127 * 11 9 7 15 15 C 1.46903 * 110.99871 * 280.67385 * 5 4 2 16 16 C 1.50697 * 109.47501 * 78.47649 * 15 5 4 17 17 N 1.30851 * 125.89210 * 255.76313 * 16 15 5 18 18 N 1.40088 * 108.22337 * 180.13620 * 17 16 15 19 19 C 1.46501 * 126.03854 * 179.87630 * 18 17 16 20 20 C 1.35046 * 107.92323 * 359.61290 * 18 17 16 21 21 C 1.35369 * 107.72985 * 0.22771 * 20 18 17 22 22 Cl 1.73603 * 126.04644 * 179.97438 * 21 20 18 23 23 H 1.09004 * 109.46785 * 299.99734 * 1 2 3 24 24 H 1.08996 * 109.46858 * 59.99529 * 1 2 3 25 25 H 1.08996 * 109.46968 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47204 * 240.00004 * 2 1 3 27 27 H 1.08994 * 109.47404 * 304.89422 * 3 2 1 28 28 H 1.09007 * 109.46802 * 64.89023 * 3 2 1 29 29 H 1.08999 * 109.47298 * 184.89063 * 3 2 1 30 30 H 1.09006 * 109.46748 * 59.38685 * 4 2 1 31 31 H 1.08996 * 109.47413 * 299.39225 * 4 2 1 32 32 H 1.09002 * 109.47227 * 48.17131 * 6 5 4 33 33 H 1.08998 * 109.47323 * 168.17589 * 6 5 4 34 34 H 0.97006 * 119.99784 * 180.02562 * 10 9 7 35 35 H 1.08998 * 109.46948 * 318.47331 * 15 5 4 36 36 H 1.08998 * 109.46755 * 198.48081 * 15 5 4 37 37 H 1.08999 * 109.46842 * 269.68849 * 19 18 17 38 38 H 1.09004 * 109.46626 * 29.68824 * 19 18 17 39 39 H 1.08993 * 109.47180 * 149.68528 * 19 18 17 40 40 H 1.08001 * 126.13029 * 180.20923 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5090 -0.7341 1.2419 6 6 4.0409 -0.8944 2.6018 7 6 3.8221 0.3777 3.3798 8 1 3.2670 1.1921 2.9382 9 6 4.3305 0.5016 4.6554 10 7 5.0068 -0.4900 5.1930 11 14 4.0599 2.0785 5.6195 12 1 3.2745 3.0332 4.7968 13 1 3.3163 1.7738 6.8683 14 1 5.3733 2.6820 5.9601 15 6 4.0218 -1.7820 0.3492 16 6 3.9338 -1.3120 -1.0799 17 7 3.0471 -1.6981 -1.9613 18 7 3.3087 -1.0332 -3.1662 19 6 2.5533 -1.1792 -4.4129 20 6 4.3768 -0.2295 -2.9740 21 6 4.7827 -0.3830 -1.6917 22 17 6.1204 0.4286 -0.9395 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.6070 1.9810 -0.8428 28 1 1.7500 1.9304 0.9306 29 1 3.1265 1.4437 -0.0876 30 1 1.6677 -1.7457 1.2547 31 1 1.6857 -0.2012 2.1392 32 1 3.5265 -1.7171 3.0986 33 1 5.1080 -1.1105 2.5514 34 1 5.3642 -0.4029 6.0906 35 1 3.4263 -2.6868 0.4714 36 1 5.0613 -1.9949 0.5984 37 1 2.9915 -1.9775 -5.0119 38 1 1.5165 -1.4249 -4.1827 39 1 2.5896 -0.2440 -4.9714 40 1 4.8267 0.4190 -3.7111 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205083458.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:57 Heat of formation + Delta-G solvation = 57.057928 kcal Electronic energy + Delta-G solvation = -21457.068924 eV Core-core repulsion = 18334.014612 eV Total energy + Delta-G solvation = -3123.054312 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.130 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.30331 -38.98261 -37.14531 -35.56215 -34.78368 -33.83627 -31.05707 -29.88396 -28.36080 -27.86868 -26.63671 -25.32350 -22.67054 -22.11383 -21.03478 -20.56783 -18.47079 -17.90590 -17.04289 -16.52544 -16.24567 -15.70285 -15.56812 -15.21181 -15.13105 -14.70464 -14.23498 -13.91463 -13.83494 -13.73052 -13.38811 -13.20256 -13.01815 -12.80585 -12.68597 -12.57512 -12.46931 -12.41230 -12.17535 -11.99946 -11.71038 -11.41906 -11.37687 -11.24004 -11.20083 -10.55468 -10.00577 -9.22572 -8.95271 -8.13375 -6.20756 0.79697 1.23666 1.41740 1.42845 1.54403 1.57653 1.99701 2.44774 3.18324 3.35617 3.71552 3.78739 4.07146 4.14293 4.22205 4.35820 4.45363 4.51546 4.57333 4.66309 4.67492 4.76845 4.85436 4.89542 4.94128 5.00801 5.09551 5.16380 5.23718 5.29857 5.33565 5.36716 5.65047 5.70267 5.74195 6.04525 6.13180 6.42811 6.61330 6.68375 6.94232 7.47243 8.97632 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.018805 B = 0.005769 C = 0.005090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.594036 B = 4852.388684 C = 5499.487994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.103 4.103 3 C -0.118 4.118 4 C 0.074 3.926 5 N -0.516 5.516 6 C 0.213 3.787 7 C -0.504 4.504 8 H 0.060 0.940 9 C 0.004 3.996 10 N -0.935 5.935 11 Si 0.961 3.039 12 H -0.266 1.266 13 H -0.280 1.280 14 H -0.280 1.280 15 C 0.129 3.871 16 C 0.103 3.897 17 N -0.304 5.304 18 N -0.364 5.364 19 C 0.095 3.905 20 C 0.081 3.919 21 C -0.188 4.188 22 Cl -0.050 7.050 23 H 0.047 0.953 24 H 0.065 0.935 25 H 0.051 0.949 26 H 0.091 0.909 27 H 0.051 0.949 28 H 0.031 0.969 29 H 0.047 0.953 30 H 0.016 0.984 31 H 0.054 0.946 32 H -0.040 1.040 33 H 0.009 0.991 34 H 0.262 0.738 35 H 0.040 0.960 36 H 0.078 0.922 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.120 0.880 40 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.786 0.836 -21.433 21.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.122 4.122 3 C -0.175 4.175 4 C -0.055 4.055 5 N -0.240 5.240 6 C 0.087 3.913 7 C -0.543 4.543 8 H 0.078 0.922 9 C -0.194 4.194 10 N -0.576 5.576 11 Si 0.786 3.214 12 H -0.190 1.190 13 H -0.206 1.206 14 H -0.206 1.206 15 C -0.001 4.001 16 C -0.062 4.062 17 N -0.129 5.129 18 N -0.146 5.146 19 C -0.044 4.044 20 C -0.068 4.068 21 C -0.226 4.226 22 Cl -0.022 7.022 23 H 0.066 0.934 24 H 0.084 0.916 25 H 0.070 0.930 26 H 0.108 0.892 27 H 0.070 0.930 28 H 0.050 0.950 29 H 0.067 0.933 30 H 0.034 0.966 31 H 0.072 0.928 32 H -0.022 1.022 33 H 0.027 0.973 34 H 0.071 0.929 35 H 0.058 0.942 36 H 0.097 0.903 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.139 0.861 40 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -5.526 0.542 -21.775 22.472 hybrid contribution 0.756 0.236 1.676 1.854 sum -4.771 0.778 -20.099 20.672 Atomic orbital electron populations 1.21724 0.94646 1.01329 1.01630 1.21441 0.95501 0.96751 0.98525 1.21491 1.01063 0.95416 0.99562 1.22105 0.87380 0.97356 0.98624 1.61861 1.07562 1.44712 1.09846 1.19394 0.93480 0.94775 0.83670 1.21393 1.33329 1.00895 0.98663 0.92188 1.25785 0.95127 0.99733 0.98742 1.70087 1.37932 1.33464 1.16127 0.85456 0.77894 0.79697 0.78318 1.18979 1.20595 1.20599 1.20349 1.00592 0.92496 0.86679 1.21907 0.92780 0.95952 0.95545 1.77292 1.22467 1.21452 0.91708 1.48618 1.23772 1.31944 1.10266 1.22307 0.96766 1.05741 0.79567 1.22662 0.90610 0.96890 0.96644 1.20772 1.00170 1.07001 0.94682 1.98334 1.43627 1.78140 1.82064 0.93415 0.91635 0.92999 0.89166 0.93047 0.94968 0.93339 0.96573 0.92774 1.02216 0.97251 0.92913 0.94223 0.90345 0.88962 0.89035 0.86129 0.76368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.84 9.19 71.98 0.66 -3.18 16 2 C -0.10 -3.52 2.65 -10.79 -0.03 -3.55 16 3 C -0.12 -4.13 8.97 71.98 0.65 -3.48 16 4 C 0.07 3.03 4.26 86.30 0.37 3.40 16 5 N -0.52 -22.94 3.70 -905.35 -3.35 -26.29 16 6 C 0.21 11.53 4.71 85.56 0.40 11.93 16 7 C -0.50 -28.97 8.39 25.60 0.21 -28.75 16 8 H 0.06 3.44 7.58 -2.91 -0.02 3.42 16 9 C 0.00 0.21 5.46 84.65 0.46 0.67 16 10 N -0.93 -57.05 13.29 21.45 0.28 -56.77 16 11 Si 0.96 45.50 29.54 68.60 2.03 47.53 16 12 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 13 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 14 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 15 C 0.13 5.09 5.44 85.56 0.47 5.56 16 16 C 0.10 3.50 4.95 43.11 0.21 3.71 16 17 N -0.30 -9.17 10.49 -47.34 -0.50 -9.66 16 18 N -0.36 -7.74 4.02 -369.44 -1.48 -9.23 16 19 C 0.10 0.94 11.47 127.77 1.47 2.41 16 20 C 0.08 1.73 11.47 83.54 0.96 2.68 16 21 C -0.19 -5.67 6.64 22.02 0.15 -5.52 16 22 Cl -0.05 -1.64 29.14 -2.72 -0.08 -1.72 16 23 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 24 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 25 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.09 3.03 4.00 -2.39 -0.01 3.02 16 27 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.03 1.20 8.14 -2.38 -0.02 1.18 16 29 H 0.05 1.90 7.78 -2.39 -0.02 1.88 16 30 H 0.02 0.66 7.62 -2.38 -0.02 0.64 16 31 H 0.05 2.48 6.95 -2.39 -0.02 2.47 16 32 H -0.04 -2.33 8.05 -2.39 -0.02 -2.35 16 33 H 0.01 0.55 7.66 -2.39 -0.02 0.53 16 34 H 0.26 15.06 8.31 -92.70 -0.77 14.29 16 35 H 0.04 1.55 7.63 -2.39 -0.02 1.53 16 36 H 0.08 3.20 7.60 -2.39 -0.02 3.18 16 37 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.12 0.43 8.14 -2.39 -0.02 0.41 16 40 H 0.22 2.67 8.06 -2.91 -0.02 2.65 16 Total: -1.00 -69.93 341.47 3.89 -66.04 By element: Atomic # 1 Polarization: 3.21 SS G_CDS: 1.01 Total: 4.23 kcal Atomic # 6 Polarization: -20.10 SS G_CDS: 5.98 Total: -14.13 kcal Atomic # 7 Polarization: -96.91 SS G_CDS: -5.05 Total: -101.95 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Atomic # 17 Polarization: -1.64 SS G_CDS: -0.08 Total: -1.72 kcal Total: -69.93 3.89 -66.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205083458.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.096 kcal (2) G-P(sol) polarization free energy of solvation -69.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds