Wall clock time and date at job start Tue Mar 31 2020 05:48:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.47301 * 2 1 4 4 C 1.53000 * 109.47496 * 240.00182 * 2 1 3 5 5 O 1.45205 * 109.47619 * 120.00066 * 2 1 3 6 6 C 1.34587 * 116.99750 * 59.99756 * 5 2 1 7 7 O 1.21457 * 120.00103 * 0.02562 * 6 5 2 8 8 N 1.34780 * 119.99724 * 180.02562 * 6 5 2 9 9 C 1.46768 * 124.34717 * 180.02562 * 8 6 5 10 10 C 1.54479 * 105.47008 * 162.98138 * 9 8 6 11 11 H 1.08995 * 110.99962 * 267.27711 * 10 9 8 12 12 O 1.42905 * 110.96444 * 143.53364 * 10 9 8 13 13 C 1.42901 * 113.99619 * 156.16444 * 12 10 9 14 14 C 1.50702 * 109.47345 * 179.97438 * 13 12 10 15 15 H 1.08001 * 119.99699 * 0.02562 * 14 13 12 16 16 C 1.37871 * 120.00379 * 179.97438 * 14 13 12 17 17 N 1.31520 * 119.99795 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99962 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47186 * 90.00366 * 18 16 14 20 20 H 1.48508 * 109.46998 * 210.00026 * 18 16 14 21 21 H 1.48499 * 109.47190 * 330.00186 * 18 16 14 22 22 C 1.54623 * 101.76734 * 25.41638 * 10 9 8 23 23 C 1.34735 * 124.30183 * 359.96189 * 8 6 5 24 24 O 1.21240 * 125.12397 * 0.40824 * 23 8 6 25 25 H 1.08998 * 109.46770 * 299.99416 * 1 2 3 26 26 H 1.08992 * 109.47215 * 60.00200 * 1 2 3 27 27 H 1.09004 * 109.46687 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.46943 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.46504 * 300.00237 * 3 2 1 30 30 H 1.08996 * 109.46589 * 60.00041 * 3 2 1 31 31 H 1.09007 * 109.46875 * 300.00023 * 4 2 1 32 32 H 1.08999 * 109.47199 * 59.99217 * 4 2 1 33 33 H 1.08993 * 109.47876 * 180.02562 * 4 2 1 34 34 H 1.09000 * 110.24529 * 43.97939 * 9 8 6 35 35 H 1.09008 * 110.31722 * 282.02000 * 9 8 6 36 36 H 1.09003 * 109.47660 * 300.00055 * 13 12 10 37 37 H 1.08998 * 109.47148 * 59.99784 * 13 12 10 38 38 H 0.97002 * 119.99739 * 179.97438 * 17 16 14 39 39 H 1.09002 * 110.48860 * 93.88058 * 22 10 9 40 40 H 1.08998 * 110.48497 * 216.38951 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 8 2.0141 -0.6845 1.1856 6 6 1.6525 -1.9718 1.3383 7 8 0.9521 -2.5090 0.5039 8 7 2.0676 -2.6650 2.4171 9 6 1.7316 -4.0696 2.6785 10 6 2.7470 -4.5452 3.7411 11 1 3.6199 -4.9989 3.2718 12 8 2.1363 -5.4510 4.6624 13 6 3.0582 -6.3285 5.3121 14 6 2.3098 -7.2340 6.2561 15 1 1.2373 -7.1481 6.3502 16 6 2.9940 -8.1726 6.9989 17 7 4.2999 -8.2775 6.8839 18 14 2.0661 -9.2953 8.1685 19 1 1.6546 -10.5278 7.4496 20 1 2.9456 -9.6578 9.3089 21 1 0.8605 -8.5929 8.6769 22 6 3.1209 -3.2161 4.4372 23 6 2.8452 -2.1568 3.3930 24 8 3.2628 -1.0192 3.4309 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 -1.7489 -1.2492 32 1 1.6767 -0.2074 -2.1392 33 1 3.1300 -0.7216 -1.2491 34 1 1.8358 -4.6582 1.7670 35 1 0.7155 -4.1501 3.0648 36 1 3.5756 -6.9302 4.5647 37 1 3.7855 -5.7412 5.8726 38 1 4.7814 -8.9377 7.4068 39 1 2.4965 -3.0571 5.3164 40 1 4.1752 -3.2138 4.7137 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205621611.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:48 Heat of formation + Delta-G solvation = -159.716863 kcal Electronic energy + Delta-G solvation = -23017.556495 eV Core-core repulsion = 19412.100208 eV Total energy + Delta-G solvation = -3605.456288 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.70095 -39.97304 -37.58330 -37.18212 -35.51442 -34.27675 -32.87231 -31.22511 -27.95054 -27.62470 -27.61976 -26.97506 -24.08362 -22.64679 -21.68202 -21.13370 -19.29063 -18.05609 -17.36036 -16.85742 -16.56015 -16.11025 -15.49984 -15.09504 -14.96154 -14.62618 -14.46229 -14.18945 -14.11335 -13.74845 -13.30141 -13.18919 -12.71434 -12.60285 -12.37900 -12.15747 -12.12998 -11.88473 -11.78767 -11.70148 -11.46187 -10.95921 -10.93767 -10.73266 -10.58911 -10.52603 -10.18772 -10.02653 -9.66047 -9.28567 -9.06258 -8.37711 -6.22419 -4.25227 1.70761 1.73020 2.92219 3.24613 3.30443 3.34757 3.52318 4.04288 4.31148 4.41973 4.46127 4.52306 4.65518 4.66680 4.97860 5.15025 5.22318 5.27099 5.30050 5.46721 5.49052 5.51999 5.57058 5.59751 5.60694 5.76376 5.83384 5.88873 5.98813 6.03401 6.09377 6.20998 6.59938 6.88543 7.23342 7.65392 7.75648 7.92192 7.97185 8.29687 8.85792 9.40238 10.88770 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.042769 B = 0.003070 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.525875 B = 9116.946296 C = 9380.652015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.128 3.872 3 C -0.139 4.139 4 C -0.184 4.184 5 O -0.333 6.333 6 C 0.664 3.336 7 O -0.537 6.537 8 N -0.560 5.560 9 C 0.113 3.887 10 C 0.084 3.916 11 H 0.085 0.915 12 O -0.373 6.373 13 C 0.193 3.807 14 C -0.520 4.520 15 H 0.068 0.932 16 C 0.058 3.942 17 N -0.896 5.896 18 Si 0.909 3.091 19 H -0.278 1.278 20 H -0.285 1.285 21 H -0.271 1.271 22 C -0.180 4.180 23 C 0.526 3.474 24 O -0.476 6.476 25 H 0.061 0.939 26 H 0.072 0.928 27 H 0.086 0.914 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.086 0.914 32 H 0.072 0.928 33 H 0.061 0.939 34 H 0.101 0.899 35 H 0.101 0.899 36 H 0.011 0.989 37 H 0.012 0.988 38 H 0.266 0.734 39 H 0.126 0.874 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.679 14.967 -13.208 20.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.092 3.908 3 C -0.196 4.196 4 C -0.241 4.241 5 O -0.247 6.247 6 C 0.421 3.579 7 O -0.425 6.425 8 N -0.311 5.311 9 C -0.007 4.007 10 C 0.024 3.976 11 H 0.103 0.897 12 O -0.291 6.291 13 C 0.120 3.880 14 C -0.558 4.558 15 H 0.087 0.913 16 C -0.143 4.143 17 N -0.535 5.535 18 Si 0.736 3.264 19 H -0.204 1.204 20 H -0.210 1.210 21 H -0.196 1.196 22 C -0.220 4.220 23 C 0.316 3.684 24 O -0.346 6.346 25 H 0.080 0.920 26 H 0.091 0.909 27 H 0.105 0.895 28 H 0.087 0.913 29 H 0.099 0.901 30 H 0.087 0.913 31 H 0.105 0.895 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.029 0.971 37 H 0.030 0.970 38 H 0.075 0.925 39 H 0.144 0.856 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -3.723 15.449 -13.431 20.807 hybrid contribution -0.098 -0.672 0.528 0.860 sum -3.821 14.777 -12.903 19.986 Atomic orbital electron populations 1.22524 0.93818 1.05038 1.02748 1.22237 0.94541 0.91975 0.82096 1.21833 1.02485 0.92172 1.03083 1.22525 1.01798 1.03347 0.96451 1.86577 1.70156 1.22108 1.45861 1.17990 0.77888 0.81070 0.80910 1.90911 1.39030 1.70527 1.41994 1.46376 1.49098 1.14980 1.20684 1.22349 1.01504 0.76450 1.00437 1.22621 0.94863 0.89920 0.90195 0.89738 1.87943 1.36045 1.49142 1.56013 1.20387 0.88799 0.87263 0.91596 1.21008 0.94964 1.17039 1.22807 0.91335 1.24938 0.94991 0.97271 0.97138 1.69950 1.06728 1.35414 1.41408 0.86314 0.79534 0.80523 0.80013 1.20392 1.21038 1.19562 1.23094 1.06094 0.94111 0.98664 1.21565 0.75810 0.88709 0.82363 1.90766 1.49239 1.18967 1.75595 0.91963 0.90876 0.89491 0.91305 0.90099 0.91300 0.89500 0.90877 0.91965 0.88100 0.88077 0.97072 0.97034 0.92473 0.85591 0.86841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.88 8.37 37.16 0.31 -1.57 16 2 C 0.13 1.42 1.13 -90.62 -0.10 1.32 16 3 C -0.14 -1.20 8.85 37.16 0.33 -0.87 16 4 C -0.18 -1.87 8.37 37.16 0.31 -1.56 16 5 O -0.33 -4.89 8.32 -47.03 -0.39 -5.29 16 6 C 0.66 10.10 7.81 54.06 0.42 10.52 16 7 O -0.54 -8.37 12.10 -19.24 -0.23 -8.61 16 8 N -0.56 -8.28 3.00 -119.49 -0.36 -8.64 16 9 C 0.11 1.56 6.61 -3.12 -0.02 1.54 16 10 C 0.08 1.31 3.60 -25.10 -0.09 1.22 16 11 H 0.08 1.24 7.90 -51.93 -0.41 0.83 16 12 O -0.37 -7.66 10.07 -35.23 -0.35 -8.01 16 13 C 0.19 4.72 5.57 36.01 0.20 4.92 16 14 C -0.52 -14.19 9.43 -34.44 -0.32 -14.51 16 15 H 0.07 1.86 7.81 -52.49 -0.41 1.45 16 16 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 17 N -0.90 -25.38 13.29 55.43 0.74 -24.65 16 18 Si 0.91 20.81 29.54 -169.99 -5.02 15.79 16 19 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 21 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 22 C -0.18 -2.58 6.61 -26.74 -0.18 -2.76 16 23 C 0.53 8.10 7.96 -10.72 -0.09 8.02 16 24 O -0.48 -8.45 16.51 -14.68 -0.24 -8.70 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.09 1.06 5.88 -51.93 -0.31 0.76 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.09 1.05 5.88 -51.92 -0.31 0.75 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.10 1.28 8.10 -51.93 -0.42 0.86 16 35 H 0.10 1.38 8.10 -51.92 -0.42 0.96 16 36 H 0.01 0.29 8.11 -51.93 -0.42 -0.13 16 37 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 39 H 0.13 1.81 8.10 -51.93 -0.42 1.39 16 40 H 0.11 1.51 8.14 -51.93 -0.42 1.09 16 LS Contribution 335.40 15.07 5.05 5.05 Total: -1.00 -30.98 335.40 -6.19 -37.16 By element: Atomic # 1 Polarization: 4.15 SS G_CDS: -6.05 Total: -1.91 kcal Atomic # 6 Polarization: 7.11 SS G_CDS: 0.68 Total: 7.79 kcal Atomic # 7 Polarization: -33.66 SS G_CDS: 0.38 Total: -33.29 kcal Atomic # 8 Polarization: -29.38 SS G_CDS: -1.22 Total: -30.60 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.98 -6.19 -37.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205621611.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.555 kcal (2) G-P(sol) polarization free energy of solvation -30.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds