Wall clock time and date at job start Tue Mar 31 2020 05:48:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.47301 * 2 1 4 4 C 1.53000 * 109.47496 * 240.00182 * 2 1 3 5 5 O 1.45205 * 109.47619 * 120.00066 * 2 1 3 6 6 C 1.34587 * 116.99750 * 59.99756 * 5 2 1 7 7 O 1.21457 * 120.00103 * 0.02562 * 6 5 2 8 8 N 1.34780 * 119.99724 * 180.02562 * 6 5 2 9 9 C 1.46768 * 124.34717 * 180.02562 * 8 6 5 10 10 C 1.54479 * 105.47008 * 162.98138 * 9 8 6 11 11 H 1.08995 * 110.99962 * 267.27711 * 10 9 8 12 12 O 1.42905 * 110.96444 * 143.53364 * 10 9 8 13 13 C 1.42901 * 113.99619 * 156.16444 * 12 10 9 14 14 C 1.50702 * 109.47345 * 179.97438 * 13 12 10 15 15 H 1.08001 * 119.99699 * 0.02562 * 14 13 12 16 16 C 1.37871 * 120.00379 * 179.97438 * 14 13 12 17 17 N 1.31520 * 119.99795 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99962 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47186 * 90.00366 * 18 16 14 20 20 H 1.48508 * 109.46998 * 210.00026 * 18 16 14 21 21 H 1.48499 * 109.47190 * 330.00186 * 18 16 14 22 22 C 1.54623 * 101.76734 * 25.41638 * 10 9 8 23 23 C 1.34735 * 124.30183 * 359.96189 * 8 6 5 24 24 O 1.21240 * 125.12397 * 0.40824 * 23 8 6 25 25 H 1.08998 * 109.46770 * 299.99416 * 1 2 3 26 26 H 1.08992 * 109.47215 * 60.00200 * 1 2 3 27 27 H 1.09004 * 109.46687 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.46943 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.46504 * 300.00237 * 3 2 1 30 30 H 1.08996 * 109.46589 * 60.00041 * 3 2 1 31 31 H 1.09007 * 109.46875 * 300.00023 * 4 2 1 32 32 H 1.08999 * 109.47199 * 59.99217 * 4 2 1 33 33 H 1.08993 * 109.47876 * 180.02562 * 4 2 1 34 34 H 1.09000 * 110.24529 * 43.97939 * 9 8 6 35 35 H 1.09008 * 110.31722 * 282.02000 * 9 8 6 36 36 H 1.09003 * 109.47660 * 300.00055 * 13 12 10 37 37 H 1.08998 * 109.47148 * 59.99784 * 13 12 10 38 38 H 0.97002 * 119.99739 * 179.97438 * 17 16 14 39 39 H 1.09002 * 110.48860 * 93.88058 * 22 10 9 40 40 H 1.08998 * 110.48497 * 216.38951 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 8 2.0141 -0.6845 1.1856 6 6 1.6525 -1.9718 1.3383 7 8 0.9521 -2.5090 0.5039 8 7 2.0676 -2.6650 2.4171 9 6 1.7316 -4.0696 2.6785 10 6 2.7470 -4.5452 3.7411 11 1 3.6199 -4.9989 3.2718 12 8 2.1363 -5.4510 4.6624 13 6 3.0582 -6.3285 5.3121 14 6 2.3098 -7.2340 6.2561 15 1 1.2373 -7.1481 6.3502 16 6 2.9940 -8.1726 6.9989 17 7 4.2999 -8.2775 6.8839 18 14 2.0661 -9.2953 8.1685 19 1 1.6546 -10.5278 7.4496 20 1 2.9456 -9.6578 9.3089 21 1 0.8605 -8.5929 8.6769 22 6 3.1209 -3.2161 4.4372 23 6 2.8452 -2.1568 3.3930 24 8 3.2628 -1.0192 3.4309 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 -1.7489 -1.2492 32 1 1.6767 -0.2074 -2.1392 33 1 3.1300 -0.7216 -1.2491 34 1 1.8358 -4.6582 1.7670 35 1 0.7155 -4.1501 3.0648 36 1 3.5756 -6.9302 4.5647 37 1 3.7855 -5.7412 5.8726 38 1 4.7814 -8.9377 7.4068 39 1 2.4965 -3.0571 5.3164 40 1 4.1752 -3.2138 4.7137 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205621611.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:48 Heat of formation + Delta-G solvation = -178.520843 kcal Electronic energy + Delta-G solvation = -23018.371897 eV Core-core repulsion = 19412.100208 eV Total energy + Delta-G solvation = -3606.271689 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.88051 -41.11802 -38.98138 -38.41757 -36.87007 -35.26472 -34.82558 -32.55007 -29.55810 -28.56873 -28.41686 -28.33311 -25.30027 -24.55620 -22.92702 -22.24428 -20.36182 -19.27962 -18.64419 -18.59452 -17.85823 -17.43594 -16.72122 -16.43998 -16.28984 -16.04097 -15.84134 -15.47417 -15.36833 -14.83044 -14.55940 -14.50264 -14.11761 -13.58019 -13.42781 -13.19836 -13.13398 -12.98804 -12.95454 -12.82596 -12.71221 -12.60146 -12.51791 -12.26890 -11.92368 -11.67810 -11.51742 -11.27734 -11.23065 -10.89192 -10.82027 -10.25297 -8.28858 -6.39539 0.48817 0.62729 1.45291 1.45978 1.57852 1.72361 2.35238 2.43590 2.78475 3.06419 3.13191 3.41425 3.65026 3.72787 3.75876 3.87696 4.14189 4.27516 4.41538 4.46182 4.58050 4.59280 4.64097 4.68361 4.71762 4.78758 4.82282 4.82922 4.96393 5.08565 5.19920 5.22538 5.24813 5.25610 5.46037 5.59490 5.98745 6.48133 6.52170 6.77905 6.81648 7.31535 8.82661 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.042769 B = 0.003070 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.525875 B = 9116.946296 C = 9380.652015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.113 3.887 3 C -0.134 4.134 4 C -0.179 4.179 5 O -0.349 6.349 6 C 0.661 3.339 7 O -0.543 6.543 8 N -0.560 5.560 9 C 0.120 3.880 10 C 0.079 3.921 11 H 0.096 0.904 12 O -0.382 6.382 13 C 0.207 3.793 14 C -0.547 4.547 15 H 0.064 0.936 16 C 0.010 3.990 17 N -0.928 5.928 18 Si 0.976 3.024 19 H -0.270 1.270 20 H -0.279 1.279 21 H -0.265 1.265 22 C -0.171 4.171 23 C 0.533 3.467 24 O -0.500 6.500 25 H 0.059 0.941 26 H 0.101 0.899 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.112 0.888 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.101 0.899 33 H 0.060 0.940 34 H 0.115 0.885 35 H 0.104 0.896 36 H -0.002 1.002 37 H 0.001 0.999 38 H 0.270 0.730 39 H 0.128 0.872 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.382 15.477 -13.768 21.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.077 3.923 3 C -0.191 4.191 4 C -0.236 4.236 5 O -0.263 6.263 6 C 0.419 3.581 7 O -0.431 6.431 8 N -0.311 5.311 9 C 0.001 3.999 10 C 0.020 3.980 11 H 0.114 0.886 12 O -0.300 6.300 13 C 0.133 3.867 14 C -0.585 4.585 15 H 0.082 0.918 16 C -0.189 4.189 17 N -0.567 5.567 18 Si 0.799 3.201 19 H -0.196 1.196 20 H -0.204 1.204 21 H -0.189 1.189 22 C -0.211 4.211 23 C 0.323 3.677 24 O -0.372 6.372 25 H 0.078 0.922 26 H 0.120 0.880 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.130 0.870 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.119 0.881 33 H 0.079 0.921 34 H 0.133 0.867 35 H 0.122 0.878 36 H 0.015 0.985 37 H 0.018 0.982 38 H 0.079 0.921 39 H 0.146 0.854 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -4.439 15.971 -14.016 21.708 hybrid contribution 0.108 -0.742 0.603 0.962 sum -4.331 15.230 -13.412 20.751 Atomic orbital electron populations 1.22484 0.93194 1.03908 1.04044 1.22721 0.95263 0.93007 0.81326 1.21881 1.02263 0.90566 1.04410 1.22484 1.01652 1.02276 0.97194 1.86589 1.70413 1.21691 1.47630 1.18089 0.77836 0.81425 0.80799 1.90911 1.39282 1.70793 1.42153 1.46409 1.48886 1.15184 1.20619 1.22294 1.00999 0.76209 1.00436 1.22793 0.95717 0.89558 0.89943 0.88644 1.87883 1.35722 1.49470 1.56958 1.19987 0.88603 0.87222 0.90936 1.21393 0.95097 1.18119 1.23864 0.91763 1.25827 0.95830 0.98614 0.98625 1.70044 1.08147 1.36190 1.42323 0.85283 0.78369 0.78531 0.77871 1.19579 1.20389 1.18921 1.23024 1.06890 0.92864 0.98285 1.21611 0.75340 0.88368 0.82367 1.90753 1.50342 1.19971 1.76153 0.92212 0.88036 0.91719 0.91689 0.86959 0.91739 0.91686 0.88062 0.92134 0.86669 0.87758 0.98468 0.98158 0.92135 0.85382 0.85689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.41 8.37 71.98 0.60 -2.80 16 2 C 0.11 2.35 1.13 -10.79 -0.01 2.34 16 3 C -0.13 -2.05 8.85 71.98 0.64 -1.41 16 4 C -0.18 -3.37 8.37 71.98 0.60 -2.76 16 5 O -0.35 -10.10 8.32 -48.41 -0.40 -10.51 16 6 C 0.66 19.85 7.81 129.79 1.01 20.87 16 7 O -0.54 -16.74 12.10 19.98 0.24 -16.50 16 8 N -0.56 -16.25 3.00 -880.85 -2.64 -18.89 16 9 C 0.12 3.23 6.61 86.83 0.57 3.80 16 10 C 0.08 2.42 3.60 31.65 0.11 2.53 16 11 H 0.10 2.74 7.90 -2.39 -0.02 2.72 16 12 O -0.38 -15.61 10.07 -148.98 -1.50 -17.11 16 13 C 0.21 10.22 5.57 71.24 0.40 10.61 16 14 C -0.55 -29.93 9.43 25.60 0.24 -29.69 16 15 H 0.06 3.48 7.81 -2.91 -0.02 3.46 16 16 C 0.01 0.54 5.46 84.65 0.46 1.00 16 17 N -0.93 -52.61 13.29 21.45 0.28 -52.33 16 18 Si 0.98 42.20 29.54 68.60 2.03 44.23 16 19 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 20 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 21 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16 22 C -0.17 -4.80 6.61 30.59 0.20 -4.60 16 23 C 0.53 16.16 7.96 87.85 0.70 16.86 16 24 O -0.50 -17.66 16.51 16.48 0.27 -17.39 16 25 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.06 1.54 5.88 -2.39 -0.01 1.52 16 28 H 0.06 1.04 8.14 -2.39 -0.02 1.03 16 29 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.06 1.53 5.88 -2.38 -0.01 1.51 16 32 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.12 2.79 8.10 -2.39 -0.02 2.77 16 35 H 0.10 2.77 8.10 -2.38 -0.02 2.75 16 36 H 0.00 -0.13 8.11 -2.39 -0.02 -0.15 16 37 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 38 H 0.27 14.32 8.31 -92.71 -0.77 13.55 16 39 H 0.13 3.60 8.10 -2.39 -0.02 3.58 16 40 H 0.12 3.24 8.14 -2.39 -0.02 3.22 16 Total: -1.00 -65.81 335.40 4.84 -60.96 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: 1.03 Total: 10.78 kcal Atomic # 6 Polarization: 11.21 SS G_CDS: 5.53 Total: 16.75 kcal Atomic # 7 Polarization: -68.86 SS G_CDS: -2.35 Total: -71.22 kcal Atomic # 8 Polarization: -60.11 SS G_CDS: -1.39 Total: -61.50 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.23 kcal Total: -65.81 4.84 -60.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205621611.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.559 kcal (2) G-P(sol) polarization free energy of solvation -65.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds