Wall clock time and date at job start Tue Mar 31 2020 05:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47193 * 2 1 4 4 C 1.52999 * 109.47241 * 240.00421 * 2 1 3 5 5 O 1.45198 * 109.47200 * 119.99915 * 2 1 3 6 6 C 1.34588 * 116.99610 * 60.00237 * 5 2 1 7 7 O 1.21458 * 120.00287 * 0.27094 * 6 5 2 8 8 N 1.34784 * 119.99740 * 180.02562 * 6 5 2 9 9 C 1.46763 * 124.34846 * 179.97438 * 8 6 5 10 10 C 1.54482 * 105.47256 * 197.01753 * 9 8 6 11 11 H 1.09001 * 110.96816 * 92.70338 * 10 9 8 12 12 O 1.42900 * 110.96682 * 216.46533 * 10 9 8 13 13 C 1.42900 * 113.99668 * 210.00138 * 12 10 9 14 14 C 1.50705 * 109.47081 * 180.02562 * 13 12 10 15 15 H 1.08008 * 119.99580 * 359.97438 * 14 13 12 16 16 C 1.37872 * 120.00310 * 179.97438 * 14 13 12 17 17 N 1.31522 * 119.99542 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 120.00304 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47256 * 59.99679 * 18 16 14 20 20 H 1.48494 * 109.47527 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47128 * 300.00013 * 18 16 14 22 22 C 1.54629 * 101.76190 * 334.58236 * 10 9 8 23 23 C 1.34414 * 124.35045 * 359.69697 * 8 6 5 24 24 O 1.21228 * 124.94288 * 359.57556 * 23 8 6 25 25 H 1.09003 * 109.47498 * 300.00057 * 1 2 3 26 26 H 1.09009 * 109.46932 * 59.99941 * 1 2 3 27 27 H 1.08992 * 109.47540 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47442 * 179.97438 * 3 2 1 29 29 H 1.08998 * 109.47720 * 299.99885 * 3 2 1 30 30 H 1.09003 * 109.47242 * 60.00517 * 3 2 1 31 31 H 1.09005 * 109.47045 * 299.99806 * 4 2 1 32 32 H 1.08999 * 109.47468 * 59.99924 * 4 2 1 33 33 H 1.08998 * 109.47244 * 180.02562 * 4 2 1 34 34 H 1.09004 * 110.24375 * 316.01702 * 9 8 6 35 35 H 1.08992 * 110.24701 * 77.92288 * 9 8 6 36 36 H 1.09002 * 109.46673 * 299.99431 * 13 12 10 37 37 H 1.08991 * 109.47630 * 59.99970 * 13 12 10 38 38 H 0.97004 * 119.99622 * 180.02562 * 17 16 14 39 39 H 1.09000 * 110.47962 * 143.47871 * 22 10 9 40 40 H 1.08997 * 110.48522 * 265.98327 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6523 -1.9718 1.3382 7 8 0.9557 -2.5103 0.5015 8 7 2.0673 -2.6650 2.4171 9 6 1.7305 -4.0692 2.6789 10 6 2.0344 -4.2935 4.1769 11 1 1.1456 -4.1241 4.7848 12 8 2.5631 -5.6020 4.4011 13 6 2.2512 -6.1424 5.6866 14 6 2.8557 -7.5171 5.8138 15 1 3.4211 -7.9362 4.9945 16 6 2.6869 -8.2397 6.9758 17 7 1.9988 -7.7290 7.9735 18 14 3.4355 -9.9438 7.1331 19 1 4.9096 -9.8532 6.9779 20 1 3.1126 -10.5050 8.4695 21 1 2.8801 -10.8279 6.0771 22 6 3.1044 -3.2104 4.4471 23 6 2.8472 -2.1605 3.3887 24 8 3.2795 -1.0282 3.4144 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6767 -1.7489 -1.2493 32 1 1.6767 -0.2073 -2.1392 33 1 3.1300 -0.7215 -1.2490 34 1 0.6743 -4.2477 2.4774 35 1 2.3471 -4.7258 2.0652 36 1 2.6587 -5.4937 6.4620 37 1 1.1693 -6.2090 5.8001 38 1 1.8803 -8.2372 8.7913 39 1 2.9776 -2.7895 5.4445 40 1 4.1054 -3.6266 4.3341 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205621612.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:51 Heat of formation + Delta-G solvation = -159.335903 kcal Electronic energy + Delta-G solvation = -23013.296013 eV Core-core repulsion = 19407.856245 eV Total energy + Delta-G solvation = -3605.439768 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.71995 -39.98209 -37.58199 -37.18010 -35.51747 -34.27752 -32.87471 -31.24539 -27.91776 -27.62365 -27.61797 -26.99109 -24.09728 -22.63530 -21.71044 -21.13682 -19.29034 -18.05348 -17.36195 -16.86287 -16.55992 -16.09937 -15.50623 -15.08587 -14.96342 -14.61784 -14.47249 -14.19460 -14.07858 -13.75126 -13.30021 -13.21653 -12.71479 -12.60245 -12.37786 -12.15660 -12.12820 -11.86526 -11.78617 -11.70163 -11.46556 -10.99024 -10.90926 -10.73265 -10.58844 -10.53234 -10.19593 -10.03246 -9.65891 -9.29806 -9.05960 -8.37212 -6.22259 -4.25200 1.70596 1.73580 2.92763 3.26471 3.30100 3.32997 3.53004 4.04542 4.31281 4.43121 4.46211 4.52323 4.64533 4.66116 4.98107 5.15059 5.22450 5.27318 5.30027 5.46669 5.49028 5.52112 5.57218 5.59927 5.60792 5.76454 5.83686 5.88306 5.97732 6.03439 6.09418 6.21459 6.60386 6.88534 7.23339 7.65149 7.75991 7.92266 7.97302 8.29638 8.85426 9.40192 10.88876 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.042270 B = 0.003068 C = 0.002985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.255407 B = 9123.757998 C = 9379.224081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.128 3.872 3 C -0.139 4.139 4 C -0.184 4.184 5 O -0.333 6.333 6 C 0.664 3.336 7 O -0.537 6.537 8 N -0.559 5.559 9 C 0.110 3.890 10 C 0.084 3.916 11 H 0.086 0.914 12 O -0.372 6.372 13 C 0.193 3.807 14 C -0.521 4.521 15 H 0.068 0.932 16 C 0.059 3.941 17 N -0.897 5.897 18 Si 0.910 3.090 19 H -0.274 1.274 20 H -0.286 1.286 21 H -0.274 1.274 22 C -0.177 4.177 23 C 0.525 3.475 24 O -0.477 6.477 25 H 0.061 0.939 26 H 0.072 0.928 27 H 0.086 0.914 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.086 0.914 32 H 0.072 0.928 33 H 0.061 0.939 34 H 0.100 0.900 35 H 0.101 0.899 36 H 0.012 0.988 37 H 0.012 0.988 38 H 0.266 0.734 39 H 0.114 0.886 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.923 14.824 -13.659 20.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.091 3.909 3 C -0.196 4.196 4 C -0.241 4.241 5 O -0.247 6.247 6 C 0.421 3.579 7 O -0.424 6.424 8 N -0.310 5.310 9 C -0.010 4.010 10 C 0.024 3.976 11 H 0.104 0.896 12 O -0.291 6.291 13 C 0.120 3.880 14 C -0.559 4.559 15 H 0.086 0.914 16 C -0.143 4.143 17 N -0.535 5.535 18 Si 0.737 3.263 19 H -0.199 1.199 20 H -0.211 1.211 21 H -0.199 1.199 22 C -0.217 4.217 23 C 0.315 3.685 24 O -0.347 6.347 25 H 0.080 0.920 26 H 0.091 0.909 27 H 0.105 0.895 28 H 0.087 0.913 29 H 0.099 0.901 30 H 0.087 0.913 31 H 0.105 0.895 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.029 0.971 37 H 0.029 0.971 38 H 0.076 0.924 39 H 0.132 0.868 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -1.871 15.264 -13.947 20.761 hybrid contribution 0.127 -0.776 0.349 0.860 sum -1.744 14.488 -13.598 19.946 Atomic orbital electron populations 1.22523 0.93823 1.05011 1.02757 1.22233 0.94529 0.91979 0.82116 1.21833 1.02495 0.92166 1.03076 1.22527 1.01812 1.03364 0.96437 1.86578 1.70105 1.22129 1.45854 1.17995 0.77846 0.81042 0.80978 1.90912 1.39300 1.70532 1.41674 1.46301 1.48946 1.14939 1.20837 1.22424 1.03718 0.76991 0.97888 1.22625 0.95511 0.86335 0.93152 0.89624 1.87947 1.75297 1.26437 1.39396 1.20399 0.95690 0.93932 0.78021 1.20972 1.34243 0.99698 1.00997 0.91381 1.24936 0.95247 0.98904 0.95221 1.69941 1.40057 1.38317 1.05194 0.86367 0.79654 0.83047 0.77270 1.19948 1.21122 1.19932 1.23056 1.04217 0.95664 0.98783 1.21486 0.75924 0.88417 0.82684 1.90763 1.48717 1.19060 1.76175 0.91957 0.90873 0.89519 0.91303 0.90094 0.91309 0.89476 0.90881 0.91965 0.88128 0.88100 0.97052 0.97051 0.92412 0.86820 0.85625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.87 8.37 37.16 0.31 -1.56 16 2 C 0.13 1.43 1.13 -90.62 -0.10 1.32 16 3 C -0.14 -1.20 8.85 37.16 0.33 -0.87 16 4 C -0.18 -1.89 8.37 37.16 0.31 -1.58 16 5 O -0.33 -4.89 8.31 -47.06 -0.39 -5.28 16 6 C 0.66 10.12 7.81 54.06 0.42 10.54 16 7 O -0.54 -8.40 12.11 -19.24 -0.23 -8.63 16 8 N -0.56 -8.28 2.99 -119.59 -0.36 -8.63 16 9 C 0.11 1.53 6.60 -3.12 -0.02 1.51 16 10 C 0.08 1.31 3.65 -25.10 -0.09 1.22 16 11 H 0.09 1.26 7.83 -51.93 -0.41 0.85 16 12 O -0.37 -7.64 10.07 -35.23 -0.35 -8.00 16 13 C 0.19 4.73 5.53 36.01 0.20 4.93 16 14 C -0.52 -14.22 9.43 -34.44 -0.32 -14.54 16 15 H 0.07 1.84 7.81 -52.48 -0.41 1.43 16 16 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 17 N -0.90 -25.39 13.29 55.43 0.74 -24.65 16 18 Si 0.91 20.82 29.54 -169.99 -5.02 15.80 16 19 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 20 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 22 C -0.18 -2.52 6.61 -26.74 -0.18 -2.70 16 23 C 0.53 8.07 7.95 -10.86 -0.09 7.98 16 24 O -0.48 -8.45 16.49 -14.78 -0.24 -8.70 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.07 0.57 8.14 -51.92 -0.42 0.14 16 27 H 0.09 1.05 5.89 -51.93 -0.31 0.74 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.09 1.07 5.87 -51.93 -0.30 0.76 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.10 1.29 8.11 -51.93 -0.42 0.87 16 35 H 0.10 1.39 8.10 -51.93 -0.42 0.97 16 36 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.01 0.29 8.12 -51.93 -0.42 -0.13 16 38 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 39 H 0.11 1.49 8.14 -51.93 -0.42 1.07 16 40 H 0.13 1.78 8.10 -51.93 -0.42 1.36 16 LS Contribution 335.30 15.07 5.05 5.05 Total: -1.00 -30.96 335.30 -6.19 -37.15 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: -6.05 Total: -1.88 kcal Atomic # 6 Polarization: 7.09 SS G_CDS: 0.67 Total: 7.77 kcal Atomic # 7 Polarization: -33.66 SS G_CDS: 0.38 Total: -33.29 kcal Atomic # 8 Polarization: -29.38 SS G_CDS: -1.22 Total: -30.61 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.96 -6.19 -37.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205621612.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.183 kcal (2) G-P(sol) polarization free energy of solvation -30.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds