Wall clock time and date at job start Tue Mar 31 2020 05:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47193 * 2 1 4 4 C 1.52999 * 109.47241 * 240.00421 * 2 1 3 5 5 O 1.45198 * 109.47200 * 119.99915 * 2 1 3 6 6 C 1.34588 * 116.99610 * 60.00237 * 5 2 1 7 7 O 1.21458 * 120.00287 * 0.27094 * 6 5 2 8 8 N 1.34784 * 119.99740 * 180.02562 * 6 5 2 9 9 C 1.46763 * 124.34846 * 179.97438 * 8 6 5 10 10 C 1.54482 * 105.47256 * 197.01753 * 9 8 6 11 11 H 1.09001 * 110.96816 * 92.70338 * 10 9 8 12 12 O 1.42900 * 110.96682 * 216.46533 * 10 9 8 13 13 C 1.42900 * 113.99668 * 210.00138 * 12 10 9 14 14 C 1.50705 * 109.47081 * 180.02562 * 13 12 10 15 15 H 1.08008 * 119.99580 * 359.97438 * 14 13 12 16 16 C 1.37872 * 120.00310 * 179.97438 * 14 13 12 17 17 N 1.31522 * 119.99542 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 120.00304 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47256 * 59.99679 * 18 16 14 20 20 H 1.48494 * 109.47527 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47128 * 300.00013 * 18 16 14 22 22 C 1.54629 * 101.76190 * 334.58236 * 10 9 8 23 23 C 1.34414 * 124.35045 * 359.69697 * 8 6 5 24 24 O 1.21228 * 124.94288 * 359.57556 * 23 8 6 25 25 H 1.09003 * 109.47498 * 300.00057 * 1 2 3 26 26 H 1.09009 * 109.46932 * 59.99941 * 1 2 3 27 27 H 1.08992 * 109.47540 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47442 * 179.97438 * 3 2 1 29 29 H 1.08998 * 109.47720 * 299.99885 * 3 2 1 30 30 H 1.09003 * 109.47242 * 60.00517 * 3 2 1 31 31 H 1.09005 * 109.47045 * 299.99806 * 4 2 1 32 32 H 1.08999 * 109.47468 * 59.99924 * 4 2 1 33 33 H 1.08998 * 109.47244 * 180.02562 * 4 2 1 34 34 H 1.09004 * 110.24375 * 316.01702 * 9 8 6 35 35 H 1.08992 * 110.24701 * 77.92288 * 9 8 6 36 36 H 1.09002 * 109.46673 * 299.99431 * 13 12 10 37 37 H 1.08991 * 109.47630 * 59.99970 * 13 12 10 38 38 H 0.97004 * 119.99622 * 180.02562 * 17 16 14 39 39 H 1.09000 * 110.47962 * 143.47871 * 22 10 9 40 40 H 1.08997 * 110.48522 * 265.98327 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6523 -1.9718 1.3382 7 8 0.9557 -2.5103 0.5015 8 7 2.0673 -2.6650 2.4171 9 6 1.7305 -4.0692 2.6789 10 6 2.0344 -4.2935 4.1769 11 1 1.1456 -4.1241 4.7848 12 8 2.5631 -5.6020 4.4011 13 6 2.2512 -6.1424 5.6866 14 6 2.8557 -7.5171 5.8138 15 1 3.4211 -7.9362 4.9945 16 6 2.6869 -8.2397 6.9758 17 7 1.9988 -7.7290 7.9735 18 14 3.4355 -9.9438 7.1331 19 1 4.9096 -9.8532 6.9779 20 1 3.1126 -10.5050 8.4695 21 1 2.8801 -10.8279 6.0771 22 6 3.1044 -3.2104 4.4471 23 6 2.8472 -2.1605 3.3887 24 8 3.2795 -1.0282 3.4144 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6767 -1.7489 -1.2493 32 1 1.6767 -0.2073 -2.1392 33 1 3.1300 -0.7215 -1.2490 34 1 0.6743 -4.2477 2.4774 35 1 2.3471 -4.7258 2.0652 36 1 2.6587 -5.4937 6.4620 37 1 1.1693 -6.2090 5.8001 38 1 1.8803 -8.2372 8.7913 39 1 2.9776 -2.7895 5.4445 40 1 4.1054 -3.6266 4.3341 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205621612.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:51 Heat of formation + Delta-G solvation = -178.123357 kcal Electronic energy + Delta-G solvation = -23014.110698 eV Core-core repulsion = 19407.856245 eV Total energy + Delta-G solvation = -3606.254453 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.90048 -41.12478 -38.97877 -38.41694 -36.87339 -35.26715 -34.82612 -32.56904 -29.52752 -28.57732 -28.41805 -28.33401 -25.31716 -24.54954 -22.94723 -22.24667 -20.36127 -19.27814 -18.65432 -18.58447 -17.85920 -17.43673 -16.70694 -16.44652 -16.27922 -16.03641 -15.85467 -15.45374 -15.36747 -14.84894 -14.56066 -14.49815 -14.11993 -13.55198 -13.43038 -13.19646 -13.13068 -12.98948 -12.95441 -12.85453 -12.69557 -12.60356 -12.51634 -12.26220 -11.93873 -11.67751 -11.51833 -11.29394 -11.23155 -10.88489 -10.82427 -10.24526 -8.28676 -6.39515 0.49105 0.63026 1.45282 1.47863 1.56129 1.72926 2.35327 2.44463 2.78893 3.06502 3.14243 3.40326 3.64968 3.72641 3.76051 3.87616 4.14911 4.27121 4.42007 4.46331 4.57824 4.58791 4.64016 4.68131 4.71621 4.78708 4.82156 4.83075 4.96615 5.08517 5.20064 5.22372 5.25008 5.25846 5.46107 5.59348 5.98781 6.48067 6.52896 6.77786 6.81422 7.31502 8.82617 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.042270 B = 0.003068 C = 0.002985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.255407 B = 9123.757998 C = 9379.224081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.112 3.888 3 C -0.134 4.134 4 C -0.179 4.179 5 O -0.349 6.349 6 C 0.661 3.339 7 O -0.543 6.543 8 N -0.559 5.559 9 C 0.118 3.882 10 C 0.079 3.921 11 H 0.096 0.904 12 O -0.381 6.381 13 C 0.207 3.793 14 C -0.548 4.548 15 H 0.064 0.936 16 C 0.010 3.990 17 N -0.928 5.928 18 Si 0.976 3.024 19 H -0.267 1.267 20 H -0.280 1.280 21 H -0.267 1.267 22 C -0.168 4.168 23 C 0.532 3.468 24 O -0.501 6.501 25 H 0.060 0.940 26 H 0.101 0.899 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.112 0.888 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.101 0.899 33 H 0.059 0.941 34 H 0.114 0.886 35 H 0.104 0.896 36 H 0.000 1.000 37 H -0.002 1.002 38 H 0.270 0.730 39 H 0.127 0.873 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.820 15.115 -14.625 21.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.077 3.923 3 C -0.191 4.191 4 C -0.236 4.236 5 O -0.263 6.263 6 C 0.418 3.582 7 O -0.431 6.431 8 N -0.310 5.310 9 C -0.002 4.002 10 C 0.020 3.980 11 H 0.114 0.886 12 O -0.300 6.300 13 C 0.132 3.868 14 C -0.586 4.586 15 H 0.083 0.917 16 C -0.189 4.189 17 N -0.567 5.567 18 Si 0.799 3.201 19 H -0.192 1.192 20 H -0.205 1.205 21 H -0.192 1.192 22 C -0.208 4.208 23 C 0.322 3.678 24 O -0.374 6.374 25 H 0.079 0.921 26 H 0.119 0.881 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.130 0.870 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.120 0.880 33 H 0.078 0.922 34 H 0.132 0.868 35 H 0.122 0.878 36 H 0.018 0.982 37 H 0.016 0.984 38 H 0.079 0.921 39 H 0.145 0.855 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -1.775 15.567 -14.939 21.649 hybrid contribution 0.063 -0.767 0.563 0.954 sum -1.712 14.800 -14.376 20.703 Atomic orbital electron populations 1.22482 0.93127 1.03910 1.04086 1.22718 0.95305 0.93000 0.81301 1.21880 1.02243 0.90550 1.04437 1.22487 1.01619 1.02277 0.97260 1.86591 1.70363 1.21699 1.47615 1.18099 0.77786 0.81399 0.80877 1.90912 1.39579 1.70803 1.41851 1.46337 1.48741 1.15113 1.20805 1.22359 1.04594 0.76710 0.96572 1.22792 0.96211 0.84456 0.94585 0.88603 1.87886 1.75813 1.28904 1.37362 1.20000 0.94369 0.93046 0.79336 1.21371 1.34705 1.01259 1.01267 0.91737 1.25827 0.95453 1.02843 0.94745 1.70040 1.41024 1.39920 1.05711 0.85337 0.79027 0.78195 0.77522 1.19181 1.20468 1.19166 1.22988 1.03840 0.94765 0.99164 1.21551 0.75422 0.88085 0.82716 1.90750 1.49784 1.20059 1.76758 0.92113 0.88057 0.91726 0.91734 0.86955 0.91682 0.91726 0.88041 0.92207 0.86816 0.87806 0.98210 0.98433 0.92125 0.85532 0.85305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.38 8.37 71.98 0.60 -2.78 16 2 C 0.11 2.36 1.13 -10.80 -0.01 2.34 16 3 C -0.13 -2.05 8.85 71.98 0.64 -1.41 16 4 C -0.18 -3.42 8.37 71.98 0.60 -2.82 16 5 O -0.35 -10.10 8.31 -48.39 -0.40 -10.50 16 6 C 0.66 19.91 7.81 129.79 1.01 20.93 16 7 O -0.54 -16.84 12.11 19.98 0.24 -16.60 16 8 N -0.56 -16.25 2.99 -881.33 -2.63 -18.89 16 9 C 0.12 3.17 6.60 86.83 0.57 3.75 16 10 C 0.08 2.41 3.65 31.65 0.12 2.53 16 11 H 0.10 2.76 7.83 -2.39 -0.02 2.74 16 12 O -0.38 -15.57 10.07 -148.98 -1.50 -17.08 16 13 C 0.21 10.22 5.53 71.24 0.39 10.61 16 14 C -0.55 -30.00 9.43 25.60 0.24 -29.76 16 15 H 0.06 3.48 7.81 -2.91 -0.02 3.46 16 16 C 0.01 0.56 5.46 84.65 0.46 1.02 16 17 N -0.93 -52.63 13.29 21.45 0.28 -52.34 16 18 Si 0.98 42.17 29.54 68.60 2.03 44.20 16 19 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 20 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 21 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 22 C -0.17 -4.65 6.61 30.59 0.20 -4.45 16 23 C 0.53 16.05 7.95 87.90 0.70 16.75 16 24 O -0.50 -17.62 16.49 16.62 0.27 -17.35 16 25 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.10 1.30 8.14 -2.38 -0.02 1.28 16 27 H 0.06 1.52 5.89 -2.39 -0.01 1.51 16 28 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.06 1.54 5.87 -2.38 -0.01 1.53 16 32 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.11 2.80 8.11 -2.39 -0.02 2.78 16 35 H 0.10 2.78 8.10 -2.39 -0.02 2.76 16 36 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 37 H 0.00 -0.11 8.12 -2.39 -0.02 -0.13 16 38 H 0.27 14.37 8.31 -92.71 -0.77 13.60 16 39 H 0.13 3.20 8.14 -2.39 -0.02 3.18 16 40 H 0.13 3.55 8.10 -2.39 -0.02 3.53 16 Total: -1.00 -65.80 335.30 4.85 -60.95 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: 1.03 Total: 10.89 kcal Atomic # 6 Polarization: 11.18 SS G_CDS: 5.53 Total: 16.72 kcal Atomic # 7 Polarization: -68.88 SS G_CDS: -2.35 Total: -71.23 kcal Atomic # 8 Polarization: -60.13 SS G_CDS: -1.39 Total: -61.52 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.20 kcal Total: -65.80 4.85 -60.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205621612.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.172 kcal (2) G-P(sol) polarization free energy of solvation -65.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds