Wall clock time and date at job start Tue Mar 31 2020 06:15:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34236 * 116.99982 * 2 1 4 4 O 1.20822 * 119.99963 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00055 * 180.02562 * 3 2 1 6 6 N 1.46495 * 109.47147 * 179.97438 * 5 3 2 7 7 C 1.46762 * 124.34859 * 269.94896 * 6 5 3 8 8 C 1.54479 * 105.47503 * 197.04008 * 7 6 5 9 9 H 1.08997 * 111.00119 * 92.71598 * 8 7 6 10 10 O 1.42905 * 110.96900 * 216.46701 * 8 7 6 11 11 C 1.42899 * 113.99778 * 203.83110 * 10 8 7 12 12 C 1.52999 * 109.46889 * 179.97438 * 11 10 8 13 13 C 1.53002 * 109.47128 * 179.97438 * 12 11 10 14 14 C 1.50698 * 109.47403 * 180.02562 * 13 12 11 15 15 H 1.08003 * 120.00089 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00281 * 180.02562 * 14 13 12 17 17 N 1.31516 * 120.00144 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 119.99918 * 359.97438 * 16 14 13 19 19 H 1.48491 * 109.47174 * 89.99914 * 18 16 14 20 20 H 1.48500 * 109.47028 * 210.00294 * 18 16 14 21 21 H 1.48508 * 109.47177 * 329.99897 * 18 16 14 22 22 C 1.54624 * 101.76173 * 334.57969 * 8 7 6 23 23 C 1.34417 * 124.35035 * 89.97026 * 6 5 3 24 24 O 1.21273 * 124.94383 * 359.54265 * 23 6 5 25 25 H 1.08999 * 109.47014 * 300.00581 * 1 2 3 26 26 H 1.09007 * 109.47027 * 60.00331 * 1 2 3 27 27 H 1.08995 * 109.47119 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47277 * 59.99459 * 5 3 2 29 29 H 1.09001 * 109.46630 * 299.99742 * 5 3 2 30 30 H 1.09002 * 110.24940 * 78.03350 * 7 6 5 31 31 H 1.09007 * 110.24593 * 316.03810 * 7 6 5 32 32 H 1.08997 * 109.47171 * 299.99768 * 11 10 8 33 33 H 1.08997 * 109.47442 * 59.99964 * 11 10 8 34 34 H 1.08997 * 109.47286 * 300.00017 * 12 11 10 35 35 H 1.09008 * 109.47201 * 60.00236 * 12 11 10 36 36 H 1.09005 * 109.47059 * 299.99976 * 13 12 11 37 37 H 1.08999 * 109.46874 * 59.99868 * 13 12 11 38 38 H 0.96993 * 120.00083 * 179.97438 * 17 16 14 39 39 H 1.09007 * 110.48273 * 143.47727 * 22 8 7 40 40 H 1.09000 * 110.49123 * 265.98933 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9817 2.6798 -0.0011 7 6 4.2171 3.4733 -1.2131 8 6 5.0343 4.6998 -0.7504 9 1 6.1043 4.5150 -0.8462 10 8 4.6535 5.8711 -1.4752 11 6 5.6632 6.8812 -1.5193 12 6 5.1492 8.0816 -2.3166 13 6 6.2301 9.1635 -2.3633 14 6 5.7236 10.3462 -3.1481 15 1 4.7299 10.3282 -3.5708 16 6 6.5286 11.4511 -3.3264 17 7 6.0867 12.4830 -4.0116 18 14 8.2470 11.4826 -2.5946 19 1 9.2134 10.9288 -3.5766 20 1 8.6204 12.8823 -2.2679 21 1 8.2733 10.6617 -1.3573 22 6 4.6226 4.8106 0.7358 23 6 4.1966 3.4075 1.1084 24 8 4.0673 2.9991 2.2429 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 3.9558 0.7809 -0.8908 29 1 3.9563 0.7807 0.8892 30 1 3.2686 3.7930 -1.6448 31 1 4.7862 2.8929 -1.9393 32 1 5.9069 7.1960 -0.5046 33 1 6.5561 6.4817 -2.0001 34 1 4.9058 7.7666 -3.3313 35 1 4.2561 8.4814 -1.8361 36 1 6.4730 9.4785 -1.3485 37 1 7.1234 8.7640 -2.8435 38 1 6.6530 13.2605 -4.1367 39 1 5.4705 5.1260 1.3441 40 1 3.7918 5.5068 0.8508 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205662825.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:44 Heat of formation + Delta-G solvation = -164.615900 kcal Electronic energy + Delta-G solvation = -22038.507879 eV Core-core repulsion = 18432.839153 eV Total energy + Delta-G solvation = -3605.668726 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.22585 -40.27590 -38.05880 -36.94692 -36.13445 -34.08226 -32.66120 -31.54156 -29.03910 -27.99219 -27.21511 -26.60727 -22.86807 -22.16214 -21.80942 -20.21532 -19.77661 -18.28647 -17.54899 -17.31198 -16.98697 -16.73241 -16.38283 -15.82687 -15.43421 -15.05620 -14.34507 -14.16097 -14.07454 -13.98766 -13.81718 -13.46446 -13.07219 -12.71624 -12.65515 -12.57580 -12.45153 -11.85054 -11.78990 -11.32127 -11.19716 -11.04014 -10.95047 -10.76064 -10.34087 -10.07664 -9.87562 -9.72589 -9.43517 -9.26401 -9.22814 -8.56520 -6.06328 -4.04996 1.79526 1.88137 2.34867 2.72842 3.28285 3.36077 3.38447 3.52406 4.08930 4.20603 4.35024 4.42456 4.54764 4.61624 4.72425 4.75152 4.81318 4.94175 5.11621 5.15252 5.26905 5.33894 5.41911 5.49768 5.63464 5.67982 5.88657 5.94617 5.98699 6.42605 6.45883 6.60221 6.81569 7.18251 7.31893 7.33363 7.35928 7.75751 7.77949 8.51573 8.98908 9.55248 11.07080 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.035685 B = 0.002568 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.464427 B =10901.006929 C =11327.378494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.361 6.361 3 C 0.438 3.562 4 O -0.491 6.491 5 C 0.138 3.862 6 N -0.608 5.608 7 C 0.106 3.894 8 C 0.082 3.918 9 H 0.087 0.913 10 O -0.369 6.369 11 C 0.059 3.941 12 C -0.101 4.101 13 C -0.011 4.011 14 C -0.521 4.521 15 H 0.073 0.927 16 C 0.065 3.935 17 N -0.902 5.902 18 Si 0.881 3.119 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.266 1.266 22 C -0.179 4.179 23 C 0.532 3.468 24 O -0.527 6.527 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.102 0.898 28 H 0.127 0.873 29 H 0.127 0.873 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.048 0.952 33 H 0.048 0.952 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.017 0.983 37 H 0.012 0.988 38 H 0.263 0.737 39 H 0.107 0.893 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.178 -27.338 7.244 28.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.278 6.278 3 C 0.278 3.722 4 O -0.377 6.377 5 C 0.014 3.986 6 N -0.344 5.344 7 C -0.016 4.016 8 C 0.022 3.978 9 H 0.105 0.895 10 O -0.288 6.288 11 C -0.017 4.017 12 C -0.139 4.139 13 C -0.048 4.048 14 C -0.559 4.559 15 H 0.091 0.909 16 C -0.136 4.136 17 N -0.541 5.541 18 Si 0.708 3.292 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.190 1.190 22 C -0.220 4.220 23 C 0.321 3.679 24 O -0.402 6.402 25 H 0.082 0.918 26 H 0.083 0.917 27 H 0.121 0.879 28 H 0.144 0.856 29 H 0.145 0.855 30 H 0.108 0.892 31 H 0.108 0.892 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.035 0.965 37 H 0.031 0.969 38 H 0.073 0.927 39 H 0.125 0.875 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -4.634 -27.095 7.695 28.545 hybrid contribution 0.786 0.219 0.360 0.892 sum -3.847 -26.876 8.055 28.320 Atomic orbital electron populations 1.23286 0.75954 1.03770 1.02758 1.86480 1.23778 1.33240 1.84257 1.24512 0.92896 0.81788 0.73018 1.90722 1.66794 1.36336 1.43857 1.20751 0.87149 0.83355 1.07345 1.47936 1.67613 1.10518 1.08316 1.22159 1.01850 0.91305 0.86320 1.22740 0.98434 0.86722 0.89863 0.89537 1.87978 1.41650 1.25641 1.73499 1.22936 0.90104 0.88630 1.00049 1.21475 1.00506 0.92642 0.99246 1.19519 0.94120 0.94092 0.97093 1.21096 1.02789 0.98772 1.33214 0.90883 1.25041 0.98335 0.95432 0.94769 1.69912 1.37252 1.06128 1.40835 0.86764 0.84953 0.77260 0.80197 1.20286 1.21355 1.19040 1.22972 1.05155 0.95207 0.98618 1.20891 0.75326 0.87741 0.83971 1.90727 1.52471 1.75943 1.21061 0.91834 0.91747 0.87921 0.85566 0.85501 0.89182 0.89157 0.93370 0.93334 0.91845 0.91822 0.96488 0.96935 0.92691 0.87508 0.86162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.24 10.56 101.05 1.07 1.30 16 2 O -0.36 -3.08 10.57 -39.27 -0.41 -3.50 16 3 C 0.44 4.43 8.03 36.01 0.29 4.72 16 4 O -0.49 -6.86 16.18 -18.75 -0.30 -7.16 16 5 C 0.14 1.01 6.52 -5.20 -0.03 0.98 16 6 N -0.61 -5.96 2.42 -173.79 -0.42 -6.39 16 7 C 0.11 0.94 7.11 -3.12 -0.02 0.92 16 8 C 0.08 0.84 3.60 -25.10 -0.09 0.75 16 9 H 0.09 0.73 7.90 -51.93 -0.41 0.32 16 10 O -0.37 -5.12 10.09 -35.23 -0.36 -5.48 16 11 C 0.06 0.88 5.82 37.16 0.22 1.10 16 12 C -0.10 -1.95 5.52 -26.73 -0.15 -2.09 16 13 C -0.01 -0.25 4.04 -27.88 -0.11 -0.36 16 14 C -0.52 -14.72 9.66 -34.44 -0.33 -15.06 16 15 H 0.07 2.23 7.99 -52.48 -0.42 1.81 16 16 C 0.07 1.89 5.47 -17.82 -0.10 1.80 16 17 N -0.90 -27.74 13.96 55.43 0.77 -26.96 16 18 Si 0.88 21.36 27.47 -169.99 -4.67 16.69 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.27 -6.13 6.54 56.52 0.37 -5.76 16 22 C -0.18 -1.96 6.62 -26.74 -0.18 -2.14 16 23 C 0.53 6.62 8.02 -10.86 -0.09 6.53 16 24 O -0.53 -8.31 17.60 5.56 0.10 -8.21 16 25 H 0.06 0.45 8.13 -51.93 -0.42 0.03 16 26 H 0.06 0.42 8.13 -51.93 -0.42 0.00 16 27 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.13 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.13 0.83 7.93 -51.93 -0.41 0.42 16 30 H 0.09 0.94 8.10 -51.93 -0.42 0.52 16 31 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.05 0.66 8.11 -51.93 -0.42 0.24 16 34 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.06 1.27 8.14 -51.92 -0.42 0.84 16 36 H 0.02 0.39 7.20 -51.93 -0.37 0.01 16 37 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 38 H 0.26 7.55 8.31 -40.82 -0.34 7.22 16 39 H 0.11 1.03 8.14 -51.92 -0.42 0.61 16 40 H 0.12 1.43 8.10 -51.93 -0.42 1.01 16 LS Contribution 344.46 15.07 5.19 5.19 Total: -1.00 -35.91 344.46 -5.87 -41.79 By element: Atomic # 1 Polarization: 1.83 SS G_CDS: -6.24 Total: -4.41 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: 0.47 Total: -1.56 kcal Atomic # 7 Polarization: -33.70 SS G_CDS: 0.35 Total: -33.35 kcal Atomic # 8 Polarization: -23.37 SS G_CDS: -0.98 Total: -24.34 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.67 Total: 16.69 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -35.91 -5.87 -41.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205662825.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.830 kcal (2) G-P(sol) polarization free energy of solvation -35.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds