Wall clock time and date at job start Tue Mar 31 2020 06:15:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34236 * 116.99982 * 2 1 4 4 O 1.20822 * 119.99963 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00055 * 180.02562 * 3 2 1 6 6 N 1.46495 * 109.47147 * 179.97438 * 5 3 2 7 7 C 1.46762 * 124.34859 * 269.94896 * 6 5 3 8 8 C 1.54479 * 105.47503 * 197.04008 * 7 6 5 9 9 H 1.08997 * 111.00119 * 92.71598 * 8 7 6 10 10 O 1.42905 * 110.96900 * 216.46701 * 8 7 6 11 11 C 1.42899 * 113.99778 * 203.83110 * 10 8 7 12 12 C 1.52999 * 109.46889 * 179.97438 * 11 10 8 13 13 C 1.53002 * 109.47128 * 179.97438 * 12 11 10 14 14 C 1.50698 * 109.47403 * 180.02562 * 13 12 11 15 15 H 1.08003 * 120.00089 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00281 * 180.02562 * 14 13 12 17 17 N 1.31516 * 120.00144 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 119.99918 * 359.97438 * 16 14 13 19 19 H 1.48491 * 109.47174 * 89.99914 * 18 16 14 20 20 H 1.48500 * 109.47028 * 210.00294 * 18 16 14 21 21 H 1.48508 * 109.47177 * 329.99897 * 18 16 14 22 22 C 1.54624 * 101.76173 * 334.57969 * 8 7 6 23 23 C 1.34417 * 124.35035 * 89.97026 * 6 5 3 24 24 O 1.21273 * 124.94383 * 359.54265 * 23 6 5 25 25 H 1.08999 * 109.47014 * 300.00581 * 1 2 3 26 26 H 1.09007 * 109.47027 * 60.00331 * 1 2 3 27 27 H 1.08995 * 109.47119 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47277 * 59.99459 * 5 3 2 29 29 H 1.09001 * 109.46630 * 299.99742 * 5 3 2 30 30 H 1.09002 * 110.24940 * 78.03350 * 7 6 5 31 31 H 1.09007 * 110.24593 * 316.03810 * 7 6 5 32 32 H 1.08997 * 109.47171 * 299.99768 * 11 10 8 33 33 H 1.08997 * 109.47442 * 59.99964 * 11 10 8 34 34 H 1.08997 * 109.47286 * 300.00017 * 12 11 10 35 35 H 1.09008 * 109.47201 * 60.00236 * 12 11 10 36 36 H 1.09005 * 109.47059 * 299.99976 * 13 12 11 37 37 H 1.08999 * 109.46874 * 59.99868 * 13 12 11 38 38 H 0.96993 * 120.00083 * 179.97438 * 17 16 14 39 39 H 1.09007 * 110.48273 * 143.47727 * 22 8 7 40 40 H 1.09000 * 110.49123 * 265.98933 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9817 2.6798 -0.0011 7 6 4.2171 3.4733 -1.2131 8 6 5.0343 4.6998 -0.7504 9 1 6.1043 4.5150 -0.8462 10 8 4.6535 5.8711 -1.4752 11 6 5.6632 6.8812 -1.5193 12 6 5.1492 8.0816 -2.3166 13 6 6.2301 9.1635 -2.3633 14 6 5.7236 10.3462 -3.1481 15 1 4.7299 10.3282 -3.5708 16 6 6.5286 11.4511 -3.3264 17 7 6.0867 12.4830 -4.0116 18 14 8.2470 11.4826 -2.5946 19 1 9.2134 10.9288 -3.5766 20 1 8.6204 12.8823 -2.2679 21 1 8.2733 10.6617 -1.3573 22 6 4.6226 4.8106 0.7358 23 6 4.1966 3.4075 1.1084 24 8 4.0673 2.9991 2.2429 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 3.9558 0.7809 -0.8908 29 1 3.9563 0.7807 0.8892 30 1 3.2686 3.7930 -1.6448 31 1 4.7862 2.8929 -1.9393 32 1 5.9069 7.1960 -0.5046 33 1 6.5561 6.4817 -2.0001 34 1 4.9058 7.7666 -3.3313 35 1 4.2561 8.4814 -1.8361 36 1 6.4730 9.4785 -1.3485 37 1 7.1234 8.7640 -2.8435 38 1 6.6530 13.2605 -4.1367 39 1 5.4705 5.1260 1.3441 40 1 3.7918 5.5068 0.8508 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205662825.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:43 Heat of formation + Delta-G solvation = -189.646853 kcal Electronic energy + Delta-G solvation = -22039.593302 eV Core-core repulsion = 18432.839153 eV Total energy + Delta-G solvation = -3606.754149 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.03107 -41.09170 -39.09908 -37.74906 -37.10509 -35.79324 -33.98024 -33.04267 -29.77179 -29.20118 -28.29043 -27.46643 -24.52535 -22.96288 -22.60143 -21.85831 -20.63958 -19.07347 -18.91740 -18.34772 -18.09437 -17.72829 -17.17471 -16.76957 -16.54123 -16.27618 -15.87401 -15.30440 -15.15046 -14.70582 -14.69525 -14.62598 -14.35465 -14.08185 -13.73656 -13.58490 -13.21419 -13.04352 -12.99717 -12.57456 -12.54375 -11.95434 -11.88975 -11.83396 -11.77313 -11.70388 -11.60305 -11.28636 -11.20358 -10.74334 -10.47639 -10.05446 -8.27187 -6.32435 1.03788 1.11802 1.39409 1.42303 1.53899 1.54764 2.02837 2.39174 2.56418 3.08170 3.30596 3.45559 3.69966 3.85767 4.00027 4.11341 4.24087 4.24831 4.26819 4.27721 4.34619 4.50803 4.56176 4.62952 4.66031 4.71504 4.79214 4.92387 4.94414 5.08032 5.19682 5.28786 5.51358 5.60511 5.67280 5.77785 6.24653 6.33012 6.58252 6.76558 6.89541 7.32067 8.89907 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.035685 B = 0.002568 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.464427 B =10901.006929 C =11327.378494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.358 6.358 3 C 0.437 3.563 4 O -0.540 6.540 5 C 0.134 3.866 6 N -0.603 5.603 7 C 0.108 3.892 8 C 0.082 3.918 9 H 0.119 0.881 10 O -0.387 6.387 11 C 0.070 3.930 12 C -0.098 4.098 13 C -0.008 4.008 14 C -0.536 4.536 15 H 0.026 0.974 16 C -0.002 4.002 17 N -0.955 5.955 18 Si 0.957 3.043 19 H -0.263 1.263 20 H -0.288 1.288 21 H -0.240 1.240 22 C -0.180 4.180 23 C 0.525 3.475 24 O -0.569 6.569 25 H 0.052 0.948 26 H 0.061 0.939 27 H 0.136 0.864 28 H 0.175 0.825 29 H 0.138 0.862 30 H 0.070 0.930 31 H 0.132 0.868 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.052 0.948 35 H 0.045 0.955 36 H 0.025 0.975 37 H 0.029 0.971 38 H 0.266 0.734 39 H 0.120 0.880 40 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.654 -29.953 7.672 30.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.274 6.274 3 C 0.279 3.721 4 O -0.429 6.429 5 C 0.011 3.989 6 N -0.336 5.336 7 C -0.014 4.014 8 C 0.023 3.977 9 H 0.136 0.864 10 O -0.306 6.306 11 C -0.006 4.006 12 C -0.136 4.136 13 C -0.045 4.045 14 C -0.574 4.574 15 H 0.045 0.955 16 C -0.198 4.198 17 N -0.596 5.596 18 Si 0.780 3.220 19 H -0.188 1.188 20 H -0.214 1.214 21 H -0.163 1.163 22 C -0.220 4.220 23 C 0.315 3.685 24 O -0.448 6.448 25 H 0.071 0.929 26 H 0.080 0.920 27 H 0.154 0.846 28 H 0.192 0.808 29 H 0.155 0.845 30 H 0.089 0.911 31 H 0.150 0.850 32 H 0.078 0.922 33 H 0.091 0.909 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.044 0.956 37 H 0.047 0.953 38 H 0.075 0.925 39 H 0.138 0.862 40 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -2.123 -29.768 8.096 30.922 hybrid contribution -0.187 0.981 0.164 1.012 sum -2.311 -28.787 8.260 30.038 Atomic orbital electron populations 1.23522 0.74969 1.05794 1.02116 1.86485 1.24811 1.32399 1.83665 1.25132 0.94007 0.81433 0.71495 1.90710 1.68015 1.37838 1.46351 1.21185 0.85239 0.82300 1.10135 1.48023 1.66341 1.11446 1.07830 1.22267 1.01374 0.91340 0.86399 1.22972 1.00399 0.85667 0.88632 0.86371 1.87937 1.41854 1.26678 1.74161 1.22656 0.90497 0.87481 0.99993 1.21284 0.98860 0.93897 0.99518 1.19447 0.95538 0.93103 0.96438 1.21507 1.01152 1.01204 1.33543 0.95523 1.26136 1.03710 0.94763 0.95219 1.70088 1.39441 1.07173 1.42848 0.85560 0.78416 0.77669 0.80393 1.18796 1.21389 1.16288 1.22977 1.05101 0.94193 0.99757 1.21134 0.75021 0.88419 0.83944 1.90698 1.54561 1.76809 1.22725 0.92911 0.92042 0.84561 0.80753 0.84458 0.91118 0.84984 0.92167 0.90937 0.92908 0.93648 0.95618 0.95252 0.92526 0.86156 0.87802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.56 113.37 1.20 1.55 16 2 O -0.36 -5.60 10.57 -51.48 -0.54 -6.14 16 3 C 0.44 8.38 8.03 71.24 0.57 8.95 16 4 O -0.54 -15.22 16.18 21.98 0.36 -14.87 16 5 C 0.13 1.62 6.52 85.63 0.56 2.18 16 6 N -0.60 -10.52 2.42 -822.33 -1.99 -12.51 16 7 C 0.11 1.60 7.11 86.83 0.62 2.22 16 8 C 0.08 1.43 3.60 31.65 0.11 1.55 16 9 H 0.12 1.40 7.90 -2.39 -0.02 1.38 16 10 O -0.39 -9.91 10.09 -148.98 -1.50 -11.41 16 11 C 0.07 1.89 5.82 71.98 0.42 2.30 16 12 C -0.10 -3.70 5.52 30.59 0.17 -3.53 16 13 C -0.01 -0.35 4.04 29.85 0.12 -0.23 16 14 C -0.54 -30.95 9.66 25.60 0.25 -30.70 16 15 H 0.03 1.71 7.99 -2.91 -0.02 1.69 16 16 C 0.00 -0.12 5.47 84.65 0.46 0.34 16 17 N -0.95 -60.30 13.96 21.45 0.30 -60.00 16 18 Si 0.96 43.14 27.47 68.60 1.88 45.03 16 19 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 20 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 21 H -0.24 -9.74 6.54 99.48 0.65 -9.09 16 22 C -0.18 -3.69 6.62 30.59 0.20 -3.49 16 23 C 0.53 12.54 8.02 87.90 0.71 13.24 16 24 O -0.57 -17.89 17.60 -3.01 -0.05 -17.94 16 25 H 0.05 0.76 8.13 -2.39 -0.02 0.74 16 26 H 0.06 0.79 8.13 -2.38 -0.02 0.77 16 27 H 0.14 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.18 0.40 8.14 -2.39 -0.02 0.38 16 29 H 0.14 1.46 7.93 -2.39 -0.02 1.44 16 30 H 0.07 1.37 8.10 -2.39 -0.02 1.35 16 31 H 0.13 0.91 8.14 -2.38 -0.02 0.89 16 32 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.07 1.65 8.11 -2.39 -0.02 1.63 16 34 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.04 1.84 8.14 -2.38 -0.02 1.82 16 36 H 0.03 1.11 7.20 -2.38 -0.02 1.09 16 37 H 0.03 1.22 7.57 -2.39 -0.02 1.20 16 38 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 39 H 0.12 2.08 8.14 -2.38 -0.02 2.06 16 40 H 0.10 2.48 8.10 -2.39 -0.02 2.46 16 Total: -1.00 -82.17 344.46 4.80 -77.37 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: 0.97 Total: 6.10 kcal Atomic # 6 Polarization: -11.00 SS G_CDS: 5.38 Total: -5.61 kcal Atomic # 7 Polarization: -70.82 SS G_CDS: -1.69 Total: -72.51 kcal Atomic # 8 Polarization: -48.62 SS G_CDS: -1.74 Total: -50.36 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 1.88 Total: 45.03 kcal Total: -82.17 4.80 -77.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205662825.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.280 kcal (2) G-P(sol) polarization free energy of solvation -82.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds