Wall clock time and date at job start Tue Mar 31 2020 06:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34224 * 117.00408 * 2 1 4 4 O 1.20825 * 120.00115 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00191 * 180.02562 * 3 2 1 6 6 N 1.46496 * 109.47299 * 180.02562 * 5 3 2 7 7 C 1.46761 * 124.35011 * 269.95411 * 6 5 3 8 8 C 1.54484 * 105.47576 * 163.00531 * 7 6 5 9 9 H 1.09000 * 110.99729 * 267.28243 * 8 7 6 10 10 O 1.42899 * 110.97033 * 143.53460 * 8 7 6 11 11 C 1.42905 * 113.99778 * 156.16933 * 10 8 7 12 12 C 1.53002 * 109.47079 * 180.02562 * 11 10 8 13 13 C 1.52996 * 109.46969 * 179.97438 * 12 11 10 14 14 C 1.50699 * 109.46861 * 179.97438 * 13 12 11 15 15 H 1.07996 * 120.00370 * 359.97438 * 14 13 12 16 16 C 1.37884 * 120.00200 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99569 * 359.97438 * 16 14 13 18 18 Si 1.86790 * 120.00138 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47573 * 89.99885 * 18 16 14 20 20 H 1.48500 * 109.47098 * 209.99844 * 18 16 14 21 21 H 1.48499 * 109.47317 * 329.99495 * 18 16 14 22 22 C 1.54624 * 101.76503 * 25.41330 * 8 7 6 23 23 C 1.34422 * 124.35064 * 89.97964 * 6 5 3 24 24 O 1.21276 * 124.94164 * 0.41835 * 23 6 5 25 25 H 1.09003 * 109.46414 * 299.99510 * 1 2 3 26 26 H 1.08997 * 109.47038 * 59.99348 * 1 2 3 27 27 H 1.08996 * 109.47643 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47398 * 60.00323 * 5 3 2 29 29 H 1.08999 * 109.47600 * 300.00763 * 5 3 2 30 30 H 1.08995 * 110.24903 * 44.00558 * 7 6 5 31 31 H 1.09001 * 110.24860 * 282.00072 * 7 6 5 32 32 H 1.09004 * 109.47054 * 299.99711 * 11 10 8 33 33 H 1.09000 * 109.47187 * 59.99767 * 11 10 8 34 34 H 1.09004 * 109.46930 * 299.99773 * 12 11 10 35 35 H 1.09004 * 109.47059 * 59.99375 * 12 11 10 36 36 H 1.08996 * 109.47452 * 300.00062 * 13 12 11 37 37 H 1.09000 * 109.47054 * 59.99902 * 13 12 11 38 38 H 0.97002 * 119.99797 * 180.02562 * 17 16 14 39 39 H 1.09005 * 110.48778 * 93.87834 * 22 8 7 40 40 H 1.09000 * 110.48946 * 216.52667 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4035 2.2093 0.0005 5 6 3.5664 1.2747 -0.0006 6 7 3.9818 2.6795 0.0002 7 6 4.2171 3.4741 -1.2111 8 6 4.1990 4.9476 -0.7474 9 1 3.2009 5.3751 -0.8435 10 8 5.1565 5.7233 -1.4710 11 6 4.8594 7.1204 -1.5143 12 6 5.9445 7.8482 -2.3104 13 6 5.6260 9.3439 -2.3573 14 6 6.6952 10.0608 -3.1409 15 1 7.5196 9.5052 -3.5628 16 6 6.6215 11.4262 -3.3182 17 7 5.6179 12.1028 -2.8039 18 14 7.9464 12.3146 -4.2901 19 1 7.5635 12.3576 -5.7243 20 1 8.0931 13.6997 -3.7752 21 1 9.2359 11.5929 -4.1434 22 6 4.6036 4.8154 0.7391 23 6 4.1970 3.4063 1.1103 24 8 4.0825 2.9924 2.2445 25 1 -0.3632 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 3.9558 0.7808 -0.8909 29 1 3.9565 0.7803 0.8890 30 1 3.4243 3.2977 -1.9379 31 1 5.1871 3.2264 -1.6423 32 1 3.8931 7.2717 -1.9956 33 1 4.8256 7.5163 -0.4993 34 1 6.9110 7.6970 -1.8295 35 1 5.9778 7.4521 -3.3254 36 1 4.6597 9.4948 -2.8383 37 1 5.5925 9.7402 -1.3424 38 1 5.5658 13.0633 -2.9290 39 1 5.6798 4.9447 0.8545 40 1 4.0637 5.5410 1.3474 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205662827.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:47 Heat of formation + Delta-G solvation = -168.742633 kcal Electronic energy + Delta-G solvation = -22005.231367 eV Core-core repulsion = 18399.383692 eV Total energy + Delta-G solvation = -3605.847674 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.20732 -40.24756 -37.96701 -36.94503 -36.07684 -33.99361 -32.64022 -31.32669 -29.00789 -27.84900 -27.04716 -26.35695 -23.05912 -22.06786 -21.80634 -20.28236 -19.73329 -18.27691 -17.53773 -17.21347 -16.92214 -16.52440 -16.22022 -15.78686 -15.31393 -14.92986 -14.47153 -14.23515 -14.00748 -13.97193 -13.80176 -13.37215 -13.02828 -12.62708 -12.56675 -12.45558 -12.22016 -11.72286 -11.59588 -11.20578 -11.18850 -10.98914 -10.92083 -10.58448 -10.48384 -10.26854 -9.86034 -9.48508 -9.33311 -9.23755 -9.13586 -8.37736 -6.02943 -4.05350 1.78824 1.89240 2.41301 2.73758 3.31227 3.37454 3.40854 3.61316 4.13339 4.28796 4.36096 4.44894 4.59725 4.71609 4.72151 4.77108 4.80743 5.05174 5.13045 5.24049 5.33197 5.36265 5.48436 5.61738 5.72456 5.79681 5.90457 6.00391 6.11443 6.60662 6.62196 6.66480 7.04022 7.32037 7.37647 7.62743 7.74751 7.81978 7.96257 8.38546 9.01305 9.58890 11.08542 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.038141 B = 0.002416 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.938956 B =11588.209181 C =11799.123360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.361 6.361 3 C 0.439 3.561 4 O -0.494 6.494 5 C 0.138 3.862 6 N -0.608 5.608 7 C 0.109 3.891 8 C 0.081 3.919 9 H 0.086 0.914 10 O -0.372 6.372 11 C 0.061 3.939 12 C -0.107 4.107 13 C 0.023 3.977 14 C -0.520 4.520 15 H 0.057 0.943 16 C 0.056 3.944 17 N -0.896 5.896 18 Si 0.894 3.106 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.273 1.273 22 C -0.178 4.178 23 C 0.532 3.468 24 O -0.527 6.527 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.102 0.898 28 H 0.127 0.873 29 H 0.128 0.872 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.048 0.952 33 H 0.048 0.952 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.017 0.983 37 H 0.017 0.983 38 H 0.261 0.739 39 H 0.120 0.880 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.395 -24.931 4.372 26.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.277 6.277 3 C 0.279 3.721 4 O -0.380 6.380 5 C 0.013 3.987 6 N -0.344 5.344 7 C -0.013 4.013 8 C 0.022 3.978 9 H 0.104 0.896 10 O -0.291 6.291 11 C -0.015 4.015 12 C -0.145 4.145 13 C -0.014 4.014 14 C -0.558 4.558 15 H 0.075 0.925 16 C -0.146 4.146 17 N -0.535 5.535 18 Si 0.722 3.278 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.198 1.198 22 C -0.219 4.219 23 C 0.321 3.679 24 O -0.402 6.402 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.121 0.879 28 H 0.145 0.855 29 H 0.145 0.855 30 H 0.104 0.896 31 H 0.110 0.890 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.035 0.965 37 H 0.036 0.964 38 H 0.070 0.930 39 H 0.138 0.862 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -7.613 -24.796 4.905 26.399 hybrid contribution 0.052 0.775 -0.444 0.895 sum -7.561 -24.021 4.461 25.575 Atomic orbital electron populations 1.23285 0.75976 1.03786 1.02719 1.86483 1.23756 1.33244 1.84204 1.24532 0.92911 0.81761 0.72883 1.90705 1.66842 1.36361 1.44073 1.20754 0.86995 0.83500 1.07425 1.47949 1.67582 1.10542 1.08340 1.22124 1.03210 0.89623 0.86380 1.22731 0.93971 0.91356 0.89738 0.89604 1.87930 1.47428 1.20146 1.73607 1.22934 0.99899 0.78525 1.00146 1.21668 0.96483 0.97782 0.98586 1.19050 0.97224 0.87729 0.97403 1.21206 1.08686 0.92402 1.33533 0.92505 1.25035 0.95884 0.97730 0.95903 1.69964 1.30648 1.07673 1.45220 0.86558 0.82142 0.78935 0.80156 1.20647 1.21232 1.19828 1.22959 1.05507 0.94587 0.98805 1.20929 0.74978 0.88051 0.83948 1.90725 1.52248 1.76167 1.21101 0.91826 0.91786 0.87916 0.85516 0.85469 0.89605 0.88979 0.93338 0.93350 0.92451 0.92468 0.96453 0.96424 0.92953 0.86216 0.87468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.23 10.56 101.05 1.07 1.30 16 2 O -0.36 -3.06 10.56 -39.24 -0.41 -3.47 16 3 C 0.44 4.40 8.03 36.01 0.29 4.69 16 4 O -0.49 -6.68 16.18 -18.75 -0.30 -6.98 16 5 C 0.14 1.05 6.53 -5.20 -0.03 1.02 16 6 N -0.61 -6.21 2.42 -173.79 -0.42 -6.63 16 7 C 0.11 1.02 7.11 -3.12 -0.02 1.00 16 8 C 0.08 0.94 3.60 -25.10 -0.09 0.85 16 9 H 0.09 0.98 7.90 -51.93 -0.41 0.57 16 10 O -0.37 -5.38 10.09 -35.23 -0.36 -5.73 16 11 C 0.06 0.99 5.82 37.16 0.22 1.21 16 12 C -0.11 -2.17 5.52 -26.73 -0.15 -2.31 16 13 C 0.02 0.58 4.97 -27.89 -0.14 0.44 16 14 C -0.52 -14.56 9.11 -34.44 -0.31 -14.88 16 15 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 16 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 17 N -0.90 -26.69 13.29 55.43 0.74 -25.96 16 18 Si 0.89 21.50 29.54 -169.99 -5.02 16.47 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 21 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 22 C -0.18 -2.07 6.62 -26.74 -0.18 -2.24 16 23 C 0.53 6.86 8.02 -10.86 -0.09 6.77 16 24 O -0.53 -8.51 17.59 5.56 0.10 -8.41 16 25 H 0.06 0.44 8.13 -51.93 -0.42 0.02 16 26 H 0.06 0.41 8.13 -51.93 -0.42 -0.02 16 27 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.13 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.13 0.88 7.92 -51.93 -0.41 0.47 16 30 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.09 0.76 8.10 -51.93 -0.42 0.34 16 32 H 0.05 0.77 8.11 -51.93 -0.42 0.35 16 33 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 36 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 39 H 0.12 1.34 8.10 -51.93 -0.42 0.92 16 40 H 0.11 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 348.05 15.07 5.24 5.24 Total: -1.00 -34.84 348.05 -6.25 -41.09 By element: Atomic # 1 Polarization: 1.32 SS G_CDS: -6.27 Total: -4.95 kcal Atomic # 6 Polarization: -1.14 SS G_CDS: 0.46 Total: -0.68 kcal Atomic # 7 Polarization: -32.90 SS G_CDS: 0.32 Total: -32.59 kcal Atomic # 8 Polarization: -23.62 SS G_CDS: -0.98 Total: -24.59 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -34.84 -6.25 -41.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205662827.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.652 kcal (2) G-P(sol) polarization free energy of solvation -34.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds