Wall clock time and date at job start Tue Mar 31 2020 06:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34224 * 117.00408 * 2 1 4 4 O 1.20825 * 120.00115 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00191 * 180.02562 * 3 2 1 6 6 N 1.46496 * 109.47299 * 180.02562 * 5 3 2 7 7 C 1.46761 * 124.35011 * 269.95411 * 6 5 3 8 8 C 1.54484 * 105.47576 * 163.00531 * 7 6 5 9 9 H 1.09000 * 110.99729 * 267.28243 * 8 7 6 10 10 O 1.42899 * 110.97033 * 143.53460 * 8 7 6 11 11 C 1.42905 * 113.99778 * 156.16933 * 10 8 7 12 12 C 1.53002 * 109.47079 * 180.02562 * 11 10 8 13 13 C 1.52996 * 109.46969 * 179.97438 * 12 11 10 14 14 C 1.50699 * 109.46861 * 179.97438 * 13 12 11 15 15 H 1.07996 * 120.00370 * 359.97438 * 14 13 12 16 16 C 1.37884 * 120.00200 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99569 * 359.97438 * 16 14 13 18 18 Si 1.86790 * 120.00138 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47573 * 89.99885 * 18 16 14 20 20 H 1.48500 * 109.47098 * 209.99844 * 18 16 14 21 21 H 1.48499 * 109.47317 * 329.99495 * 18 16 14 22 22 C 1.54624 * 101.76503 * 25.41330 * 8 7 6 23 23 C 1.34422 * 124.35064 * 89.97964 * 6 5 3 24 24 O 1.21276 * 124.94164 * 0.41835 * 23 6 5 25 25 H 1.09003 * 109.46414 * 299.99510 * 1 2 3 26 26 H 1.08997 * 109.47038 * 59.99348 * 1 2 3 27 27 H 1.08996 * 109.47643 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47398 * 60.00323 * 5 3 2 29 29 H 1.08999 * 109.47600 * 300.00763 * 5 3 2 30 30 H 1.08995 * 110.24903 * 44.00558 * 7 6 5 31 31 H 1.09001 * 110.24860 * 282.00072 * 7 6 5 32 32 H 1.09004 * 109.47054 * 299.99711 * 11 10 8 33 33 H 1.09000 * 109.47187 * 59.99767 * 11 10 8 34 34 H 1.09004 * 109.46930 * 299.99773 * 12 11 10 35 35 H 1.09004 * 109.47059 * 59.99375 * 12 11 10 36 36 H 1.08996 * 109.47452 * 300.00062 * 13 12 11 37 37 H 1.09000 * 109.47054 * 59.99902 * 13 12 11 38 38 H 0.97002 * 119.99797 * 180.02562 * 17 16 14 39 39 H 1.09005 * 110.48778 * 93.87834 * 22 8 7 40 40 H 1.09000 * 110.48946 * 216.52667 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4035 2.2093 0.0005 5 6 3.5664 1.2747 -0.0006 6 7 3.9818 2.6795 0.0002 7 6 4.2171 3.4741 -1.2111 8 6 4.1990 4.9476 -0.7474 9 1 3.2009 5.3751 -0.8435 10 8 5.1565 5.7233 -1.4710 11 6 4.8594 7.1204 -1.5143 12 6 5.9445 7.8482 -2.3104 13 6 5.6260 9.3439 -2.3573 14 6 6.6952 10.0608 -3.1409 15 1 7.5196 9.5052 -3.5628 16 6 6.6215 11.4262 -3.3182 17 7 5.6179 12.1028 -2.8039 18 14 7.9464 12.3146 -4.2901 19 1 7.5635 12.3576 -5.7243 20 1 8.0931 13.6997 -3.7752 21 1 9.2359 11.5929 -4.1434 22 6 4.6036 4.8154 0.7391 23 6 4.1970 3.4063 1.1103 24 8 4.0825 2.9924 2.2445 25 1 -0.3632 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 3.9558 0.7808 -0.8909 29 1 3.9565 0.7803 0.8890 30 1 3.4243 3.2977 -1.9379 31 1 5.1871 3.2264 -1.6423 32 1 3.8931 7.2717 -1.9956 33 1 4.8256 7.5163 -0.4993 34 1 6.9110 7.6970 -1.8295 35 1 5.9778 7.4521 -3.3254 36 1 4.6597 9.4948 -2.8383 37 1 5.5925 9.7402 -1.3424 38 1 5.5658 13.0633 -2.9290 39 1 5.6798 4.9447 0.8545 40 1 4.0637 5.5410 1.3474 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205662827.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:46 Heat of formation + Delta-G solvation = -191.460311 kcal Electronic energy + Delta-G solvation = -22006.216479 eV Core-core repulsion = 18399.383692 eV Total energy + Delta-G solvation = -3606.832787 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.04145 -41.08855 -39.11117 -37.74295 -37.09602 -35.80926 -33.90219 -32.89347 -29.73890 -28.98512 -28.17881 -27.45295 -24.85834 -22.93548 -22.64842 -21.96927 -20.63999 -19.03950 -18.62906 -18.33655 -17.99345 -17.65087 -17.26980 -16.79702 -16.52347 -16.43916 -15.95869 -15.28899 -15.12836 -14.70622 -14.62456 -14.42945 -14.16900 -14.04824 -13.72749 -13.55453 -13.20406 -13.01740 -12.96333 -12.65372 -12.50645 -12.30757 -11.95040 -11.87124 -11.77663 -11.71930 -11.46086 -11.25033 -11.15056 -10.54594 -10.50757 -10.06370 -8.19466 -6.29928 1.03765 1.10852 1.42480 1.43507 1.54485 1.55229 2.01335 2.40375 2.55490 3.14379 3.26623 3.42335 3.70643 3.82734 3.98389 4.11169 4.23241 4.25010 4.27991 4.28575 4.33891 4.49651 4.55872 4.64263 4.67454 4.71016 4.78529 4.97738 5.02060 5.17681 5.22408 5.28926 5.53020 5.74209 5.75951 5.85973 6.15384 6.29002 6.58525 6.86750 6.88351 7.39262 8.92452 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.038141 B = 0.002416 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.938956 B =11588.209181 C =11799.123360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.359 6.359 3 C 0.439 3.561 4 O -0.536 6.536 5 C 0.134 3.866 6 N -0.603 5.603 7 C 0.115 3.885 8 C 0.077 3.923 9 H 0.088 0.912 10 O -0.375 6.375 11 C 0.072 3.928 12 C -0.096 4.096 13 C 0.025 3.975 14 C -0.542 4.542 15 H 0.061 0.939 16 C -0.002 4.002 17 N -0.933 5.933 18 Si 0.966 3.034 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.263 1.263 22 C -0.177 4.177 23 C 0.527 3.473 24 O -0.567 6.567 25 H 0.053 0.947 26 H 0.062 0.938 27 H 0.135 0.865 28 H 0.173 0.827 29 H 0.136 0.864 30 H 0.101 0.899 31 H 0.111 0.889 32 H 0.054 0.946 33 H 0.051 0.949 34 H 0.056 0.944 35 H 0.058 0.942 36 H -0.003 1.003 37 H -0.004 1.004 38 H 0.264 0.736 39 H 0.124 0.876 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.578 -26.569 3.190 27.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.274 6.274 3 C 0.282 3.718 4 O -0.426 6.426 5 C 0.011 3.989 6 N -0.337 5.337 7 C -0.007 4.007 8 C 0.019 3.981 9 H 0.106 0.894 10 O -0.293 6.293 11 C -0.004 4.004 12 C -0.134 4.134 13 C -0.012 4.012 14 C -0.580 4.580 15 H 0.080 0.920 16 C -0.200 4.200 17 N -0.574 5.574 18 Si 0.790 3.210 19 H -0.197 1.197 20 H -0.209 1.209 21 H -0.187 1.187 22 C -0.217 4.217 23 C 0.316 3.684 24 O -0.446 6.446 25 H 0.072 0.928 26 H 0.081 0.919 27 H 0.153 0.847 28 H 0.190 0.810 29 H 0.154 0.846 30 H 0.119 0.881 31 H 0.129 0.871 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.015 0.985 37 H 0.014 0.986 38 H 0.072 0.928 39 H 0.142 0.858 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -6.796 -26.485 3.691 27.591 hybrid contribution -0.272 1.200 -0.065 1.232 sum -7.068 -25.285 3.626 26.504 Atomic orbital electron populations 1.23530 0.74865 1.05790 1.02208 1.86485 1.24887 1.32395 1.83639 1.24990 0.93757 0.81502 0.71564 1.90693 1.67895 1.37680 1.46298 1.21154 0.85554 0.82241 1.09995 1.48011 1.66366 1.11552 1.07753 1.22185 1.04823 0.87676 0.86041 1.22867 0.93340 0.92460 0.89478 0.89424 1.87882 1.48386 1.18918 1.74139 1.22591 0.98514 0.79668 0.99668 1.21387 0.97698 0.94818 0.99470 1.18940 0.95686 0.91142 0.95423 1.21675 1.09406 0.93140 1.33785 0.92047 1.25984 0.98255 0.98753 0.96968 1.70091 1.32610 1.08069 1.46588 0.85435 0.79346 0.77514 0.78693 1.19734 1.20882 1.18725 1.22940 1.05746 0.94210 0.98843 1.21082 0.74696 0.88616 0.83957 1.90699 1.54305 1.76956 1.22689 0.92821 0.91883 0.84678 0.81015 0.84639 0.88073 0.87142 0.92804 0.93040 0.92478 0.92277 0.98496 0.98591 0.92768 0.85825 0.87602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.56 113.37 1.20 1.53 16 2 O -0.36 -5.48 10.56 -51.36 -0.54 -6.02 16 3 C 0.44 8.19 8.03 71.24 0.57 8.76 16 4 O -0.54 -14.24 16.18 21.97 0.36 -13.88 16 5 C 0.13 1.71 6.53 85.63 0.56 2.27 16 6 N -0.60 -11.15 2.42 -822.33 -1.99 -13.14 16 7 C 0.11 1.84 7.11 86.83 0.62 2.46 16 8 C 0.08 1.67 3.60 31.65 0.11 1.78 16 9 H 0.09 1.89 7.90 -2.39 -0.02 1.87 16 10 O -0.37 -10.15 10.09 -148.98 -1.50 -11.65 16 11 C 0.07 2.29 5.82 71.98 0.42 2.71 16 12 C -0.10 -3.83 5.52 30.59 0.17 -3.66 16 13 C 0.03 1.30 4.97 29.85 0.15 1.45 16 14 C -0.54 -30.49 9.11 25.60 0.23 -30.25 16 15 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 16 C 0.00 -0.11 5.46 84.66 0.46 0.35 16 17 N -0.93 -56.33 13.29 21.45 0.28 -56.04 16 18 Si 0.97 43.86 29.54 68.60 2.03 45.89 16 19 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 20 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 21 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 22 C -0.18 -3.97 6.62 30.59 0.20 -3.77 16 23 C 0.53 13.21 8.02 87.90 0.71 13.92 16 24 O -0.57 -18.39 17.59 -3.02 -0.05 -18.44 16 25 H 0.05 0.73 8.13 -2.39 -0.02 0.71 16 26 H 0.06 0.74 8.13 -2.39 -0.02 0.72 16 27 H 0.14 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.17 0.63 8.14 -2.38 -0.02 0.62 16 29 H 0.14 1.60 7.92 -2.39 -0.02 1.58 16 30 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.11 1.44 8.10 -2.39 -0.02 1.42 16 32 H 0.05 1.66 8.11 -2.38 -0.02 1.65 16 33 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.06 2.26 8.14 -2.38 -0.02 2.24 16 35 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 36 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 37 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 38 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 39 H 0.12 2.66 8.10 -2.38 -0.02 2.64 16 40 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16 Total: -1.00 -75.92 348.05 4.99 -70.93 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: 1.02 Total: 4.81 kcal Atomic # 6 Polarization: -7.85 SS G_CDS: 5.40 Total: -2.46 kcal Atomic # 7 Polarization: -67.47 SS G_CDS: -1.71 Total: -69.18 kcal Atomic # 8 Polarization: -48.25 SS G_CDS: -1.74 Total: -50.00 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -75.92 4.99 -70.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205662827.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.534 kcal (2) G-P(sol) polarization free energy of solvation -75.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds