Wall clock time and date at job start Tue Mar 31 2020 05:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29027 * 124.91838 * 2 1 4 4 C 1.31782 * 117.12386 * 180.02562 * 3 2 1 5 5 C 1.50697 * 122.74809 * 179.97438 * 4 3 2 6 6 O 1.42901 * 109.47019 * 180.02562 * 5 4 3 7 7 C 1.42898 * 113.99914 * 174.45759 * 6 5 4 8 8 H 1.09007 * 109.47191 * 333.84079 * 7 6 5 9 9 C 1.50695 * 109.47152 * 213.84344 * 7 6 5 10 10 H 1.08007 * 120.00319 * 354.05928 * 9 7 6 11 11 C 1.37876 * 120.00668 * 174.05640 * 9 7 6 12 12 N 1.31518 * 119.99712 * 0.02562 * 11 9 7 13 13 Si 1.86800 * 120.00426 * 179.97438 * 11 9 7 14 14 H 1.48495 * 109.47001 * 90.00596 * 13 11 9 15 15 H 1.48500 * 109.47041 * 210.00162 * 13 11 9 16 16 H 1.48493 * 109.46942 * 330.00056 * 13 11 9 17 17 C 1.52996 * 109.47478 * 93.83994 * 7 6 5 18 18 N 1.46898 * 109.47099 * 58.71273 * 17 7 6 19 19 C 1.46896 * 109.47514 * 63.97763 * 18 17 7 20 20 C 1.46901 * 109.47043 * 183.98351 * 18 17 7 21 21 C 1.46900 * 109.46910 * 303.97813 * 18 17 7 22 22 C 1.33642 * 114.50121 * 0.22692 * 4 3 2 23 23 S 1.70981 * 124.91302 * 179.97438 * 2 1 3 24 24 H 1.08995 * 109.47169 * 90.00450 * 1 2 3 25 25 H 1.09000 * 109.47214 * 210.00966 * 1 2 3 26 26 H 1.09001 * 109.46853 * 330.00356 * 1 2 3 27 27 H 1.09004 * 109.47062 * 300.02646 * 5 4 3 28 28 H 1.09002 * 109.46871 * 60.02503 * 5 4 3 29 29 H 0.96999 * 120.00201 * 180.02562 * 12 11 9 30 30 H 1.09002 * 109.47327 * 178.70816 * 17 7 6 31 31 H 1.09000 * 109.47091 * 298.70539 * 17 7 6 32 32 H 1.09000 * 109.46587 * 40.81940 * 19 18 17 33 33 H 1.08998 * 109.47233 * 160.81625 * 19 18 17 34 34 H 1.08994 * 109.47336 * 280.82042 * 19 18 17 35 35 H 1.08997 * 109.47674 * 59.99515 * 20 18 17 36 36 H 1.08998 * 109.46989 * 179.97438 * 20 18 17 37 37 H 1.09006 * 109.47201 * 299.99294 * 20 18 17 38 38 H 1.09003 * 109.47353 * 81.63449 * 21 18 17 39 39 H 1.08996 * 109.47301 * 201.63874 * 21 18 17 40 40 H 1.09008 * 109.47154 * 321.63913 * 21 18 17 41 41 H 1.07996 * 126.03734 * 179.76810 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2456 1.0580 0.0000 4 6 3.5512 0.8793 -0.0005 5 6 4.5308 2.0244 -0.0012 6 8 5.8642 1.5106 -0.0022 7 6 6.8736 2.5141 -0.1290 8 1 6.4621 3.3800 -0.6478 9 6 8.0346 1.9623 -0.9155 10 1 8.0480 0.9203 -1.1994 11 6 9.0797 2.7875 -1.2728 12 7 9.0637 4.0562 -0.9268 13 14 10.5192 2.1032 -2.2471 14 1 10.2425 2.2383 -3.6997 15 1 11.7515 2.8581 -1.9056 16 1 10.7078 0.6693 -1.9103 17 6 7.3533 2.9337 1.2619 18 7 7.8797 1.7608 1.9728 19 6 9.0633 1.2513 1.2677 20 6 8.2519 2.1440 3.3412 21 6 6.8499 0.7143 2.0204 22 6 3.9354 -0.4007 -0.0058 23 16 2.4856 -1.4021 0.0006 24 1 -0.3633 -0.0001 -1.0276 25 1 -0.3633 -0.8899 0.5140 26 1 -0.3633 0.8900 0.5138 27 1 4.3757 2.6347 -0.8910 28 1 4.3771 2.6344 0.8890 29 1 9.7988 4.6369 -1.1784 30 1 8.1394 3.6825 1.1647 31 1 6.5185 3.3541 1.8227 32 1 9.6747 2.0890 0.9320 33 1 9.6458 0.6237 1.9421 34 1 8.7478 0.6635 0.4058 35 1 7.3736 2.5220 3.8644 36 1 8.6421 1.2736 3.8688 37 1 9.0161 2.9206 3.3060 38 1 6.8452 0.1660 1.0782 39 1 7.0668 0.0281 2.8390 40 1 5.8735 1.1722 2.1791 41 1 4.9545 -0.7582 -0.0107 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206447516.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:23 Heat of formation + Delta-G solvation = 106.427033 kcal Electronic energy + Delta-G solvation = -21819.326281 eV Core-core repulsion = 18752.226652 eV Total energy + Delta-G solvation = -3067.099628 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.138 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.14985 -40.88073 -38.51314 -35.13245 -33.48742 -31.36893 -30.17128 -29.89534 -29.37617 -28.25130 -27.45642 -24.52160 -23.69544 -22.84728 -20.62674 -19.23443 -18.79376 -18.24136 -18.12860 -17.54460 -16.83464 -16.64037 -16.44567 -15.64492 -15.54320 -15.13469 -14.81494 -14.62004 -14.44270 -14.05047 -13.91111 -13.84171 -13.74843 -13.49155 -13.42548 -13.13734 -13.10002 -12.90844 -12.72102 -12.48430 -12.17599 -12.06490 -11.65701 -11.13728 -10.62009 -10.52182 -10.34966 -10.16624 -9.59478 -7.98406 -6.06554 -0.23338 0.40642 0.65345 0.79088 1.78278 1.92473 2.03248 2.11283 2.40397 2.62241 2.65755 2.67928 2.83989 3.33262 3.38260 3.42700 3.52437 3.74653 3.82654 3.87979 3.97933 4.07621 4.11501 4.19993 4.25806 4.31702 4.35886 4.45189 4.46156 4.50298 4.54662 4.67607 4.85569 4.88715 4.94046 5.16008 5.23045 5.93003 6.11570 6.39268 6.77892 7.02437 7.62053 9.07395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.053 3.947 3 N -0.472 5.472 4 C 0.064 3.936 5 C 0.135 3.865 6 O -0.389 6.389 7 C 0.200 3.800 8 H 0.069 0.931 9 C -0.552 4.552 10 H 0.083 0.917 11 C 0.070 3.930 12 N -0.876 5.876 13 Si 0.900 3.100 14 H -0.267 1.267 15 H -0.277 1.277 16 H -0.265 1.265 17 C -0.021 4.021 18 N -0.248 5.248 19 C -0.034 4.034 20 C -0.042 4.042 21 C -0.026 4.026 22 C -0.236 4.236 23 S 0.114 5.886 24 H 0.088 0.912 25 H 0.082 0.918 26 H 0.090 0.910 27 H 0.074 0.926 28 H 0.061 0.939 29 H 0.283 0.717 30 H 0.145 0.855 31 H 0.087 0.913 32 H 0.116 0.884 33 H 0.079 0.921 34 H 0.152 0.848 35 H 0.107 0.893 36 H 0.108 0.892 37 H 0.112 0.888 38 H 0.134 0.866 39 H 0.090 0.910 40 H 0.105 0.895 41 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.762 -5.436 11.746 13.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.225 4.225 3 N -0.189 5.189 4 C -0.067 4.067 5 C 0.056 3.944 6 O -0.309 6.309 7 C 0.143 3.857 8 H 0.087 0.913 9 C -0.588 4.588 10 H 0.101 0.899 11 C -0.137 4.137 12 N -0.510 5.510 13 Si 0.725 3.275 14 H -0.192 1.192 15 H -0.202 1.202 16 H -0.190 1.190 17 C -0.142 4.142 18 N 0.094 4.906 19 C -0.175 4.175 20 C -0.184 4.184 21 C -0.167 4.167 22 C -0.375 4.375 23 S 0.368 5.632 24 H 0.107 0.893 25 H 0.101 0.899 26 H 0.109 0.891 27 H 0.092 0.908 28 H 0.079 0.921 29 H 0.094 0.906 30 H 0.163 0.837 31 H 0.106 0.894 32 H 0.135 0.865 33 H 0.097 0.903 34 H 0.169 0.831 35 H 0.125 0.875 36 H 0.127 0.873 37 H 0.131 0.869 38 H 0.152 0.848 39 H 0.109 0.891 40 H 0.124 0.876 41 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -3.067 -5.998 11.748 13.543 hybrid contribution 1.299 0.957 -0.638 1.735 sum -1.768 -5.041 11.110 12.327 Atomic orbital electron populations 1.20481 0.84932 1.04382 1.04216 1.27015 1.01826 0.90775 1.02923 1.65909 1.04190 1.31987 1.16804 1.19906 0.89752 0.94103 1.02939 1.20545 0.81177 0.91101 1.01587 1.87884 1.13321 1.35589 1.94077 1.20133 0.86782 0.90093 0.88691 0.91315 1.20969 1.02484 0.97887 1.37476 0.89949 1.24992 0.99265 0.94651 0.94771 1.69728 1.33508 1.04312 1.43458 0.86393 0.80175 0.79325 0.81652 1.19215 1.20189 1.18964 1.24745 1.03684 0.87344 0.98418 1.45704 1.15721 1.15865 1.13279 1.24744 0.86669 1.05217 1.00863 1.24018 1.05990 1.05979 0.82427 1.24221 0.92484 0.92160 1.07836 1.26781 1.03100 0.95454 1.12118 1.84153 0.98113 1.12734 1.68200 0.89329 0.89921 0.89137 0.90840 0.92062 0.90632 0.83731 0.89448 0.86521 0.90288 0.83069 0.87460 0.87291 0.86927 0.84752 0.89118 0.87626 0.80030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 0.15 10.46 36.01 0.38 0.53 16 2 C 0.05 0.04 7.39 -13.46 -0.10 -0.05 16 3 N -0.47 -1.27 10.53 -8.06 -0.08 -1.35 16 4 C 0.06 0.08 6.74 -84.23 -0.57 -0.48 16 5 C 0.14 0.01 6.05 36.00 0.22 0.23 16 6 O -0.39 0.31 4.72 -35.23 -0.17 0.14 16 7 C 0.20 0.17 2.24 -27.89 -0.06 0.10 16 8 H 0.07 0.29 7.66 -51.93 -0.40 -0.11 16 9 C -0.55 -2.00 5.29 -34.44 -0.18 -2.18 16 10 H 0.08 0.34 7.04 -52.48 -0.37 -0.03 16 11 C 0.07 0.41 3.65 -17.82 -0.07 0.34 16 12 N -0.88 -6.28 11.76 55.43 0.65 -5.63 16 13 Si 0.90 5.53 29.54 -169.99 -5.02 0.51 16 14 H -0.27 -2.29 7.11 56.52 0.40 -1.89 16 15 H -0.28 -1.98 7.11 56.52 0.40 -1.57 16 16 H -0.27 -1.42 7.11 56.52 0.40 -1.02 16 17 C -0.02 0.07 4.06 -3.83 -0.02 0.06 16 18 N -0.25 1.81 0.05 -395.63 -0.02 1.79 16 19 C -0.03 0.19 6.89 60.06 0.41 0.60 16 20 C -0.04 0.43 7.85 60.06 0.47 0.90 16 21 C -0.03 0.20 7.00 60.06 0.42 0.62 16 22 C -0.24 0.02 10.56 29.12 0.31 0.33 16 23 S 0.11 -0.05 23.18 -107.50 -2.49 -2.54 16 24 H 0.09 -0.22 8.14 -51.93 -0.42 -0.64 16 25 H 0.08 -0.29 8.14 -51.93 -0.42 -0.72 16 26 H 0.09 -0.17 8.14 -51.93 -0.42 -0.59 16 27 H 0.07 0.14 7.96 -51.93 -0.41 -0.28 16 28 H 0.06 -0.09 8.14 -51.93 -0.42 -0.51 16 29 H 0.28 2.25 8.31 -40.82 -0.34 1.91 16 30 H 0.15 -0.16 6.29 -51.93 -0.33 -0.49 16 31 H 0.09 -0.46 8.05 -51.93 -0.42 -0.88 16 32 H 0.12 -0.32 6.07 -51.93 -0.31 -0.63 16 33 H 0.08 -0.65 7.81 -51.93 -0.41 -1.06 16 34 H 0.15 -0.50 4.49 -51.93 -0.23 -0.74 16 35 H 0.11 -1.20 8.12 -51.93 -0.42 -1.62 16 36 H 0.11 -1.30 7.86 -51.93 -0.41 -1.71 16 37 H 0.11 -1.12 8.14 -51.93 -0.42 -1.54 16 38 H 0.13 -0.80 5.67 -51.93 -0.29 -1.10 16 39 H 0.09 -0.93 7.76 -51.93 -0.40 -1.34 16 40 H 0.11 -0.76 6.77 -51.92 -0.35 -1.12 16 41 H 0.18 -0.32 7.46 -52.49 -0.39 -0.71 16 LS Contribution 327.31 15.07 4.93 4.93 Total: 0.00 -12.16 327.31 -7.38 -19.54 By element: Atomic # 1 Polarization: -11.98 SS G_CDS: -6.40 Total: -18.38 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: 1.22 Total: 0.98 kcal Atomic # 7 Polarization: -5.73 SS G_CDS: 0.55 Total: -5.18 kcal Atomic # 8 Polarization: 0.31 SS G_CDS: -0.17 Total: 0.14 kcal Atomic # 14 Polarization: 5.53 SS G_CDS: -5.02 Total: 0.51 kcal Atomic # 16 Polarization: -0.05 SS G_CDS: -2.49 Total: -2.54 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -12.16 -7.38 -19.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206447516.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.968 kcal (2) G-P(sol) polarization free energy of solvation -12.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds