Wall clock time and date at job start Tue Mar 31 2020 05:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29027 * 124.91838 * 2 1 4 4 C 1.31782 * 117.12386 * 180.02562 * 3 2 1 5 5 C 1.50697 * 122.74809 * 179.97438 * 4 3 2 6 6 O 1.42901 * 109.47019 * 180.02562 * 5 4 3 7 7 C 1.42898 * 113.99914 * 174.45759 * 6 5 4 8 8 H 1.09007 * 109.47191 * 333.84079 * 7 6 5 9 9 C 1.50695 * 109.47152 * 213.84344 * 7 6 5 10 10 H 1.08007 * 120.00319 * 354.05928 * 9 7 6 11 11 C 1.37876 * 120.00668 * 174.05640 * 9 7 6 12 12 N 1.31518 * 119.99712 * 0.02562 * 11 9 7 13 13 Si 1.86800 * 120.00426 * 179.97438 * 11 9 7 14 14 H 1.48495 * 109.47001 * 90.00596 * 13 11 9 15 15 H 1.48500 * 109.47041 * 210.00162 * 13 11 9 16 16 H 1.48493 * 109.46942 * 330.00056 * 13 11 9 17 17 C 1.52996 * 109.47478 * 93.83994 * 7 6 5 18 18 N 1.46898 * 109.47099 * 58.71273 * 17 7 6 19 19 C 1.46896 * 109.47514 * 63.97763 * 18 17 7 20 20 C 1.46901 * 109.47043 * 183.98351 * 18 17 7 21 21 C 1.46900 * 109.46910 * 303.97813 * 18 17 7 22 22 C 1.33642 * 114.50121 * 0.22692 * 4 3 2 23 23 S 1.70981 * 124.91302 * 179.97438 * 2 1 3 24 24 H 1.08995 * 109.47169 * 90.00450 * 1 2 3 25 25 H 1.09000 * 109.47214 * 210.00966 * 1 2 3 26 26 H 1.09001 * 109.46853 * 330.00356 * 1 2 3 27 27 H 1.09004 * 109.47062 * 300.02646 * 5 4 3 28 28 H 1.09002 * 109.46871 * 60.02503 * 5 4 3 29 29 H 0.96999 * 120.00201 * 180.02562 * 12 11 9 30 30 H 1.09002 * 109.47327 * 178.70816 * 17 7 6 31 31 H 1.09000 * 109.47091 * 298.70539 * 17 7 6 32 32 H 1.09000 * 109.46587 * 40.81940 * 19 18 17 33 33 H 1.08998 * 109.47233 * 160.81625 * 19 18 17 34 34 H 1.08994 * 109.47336 * 280.82042 * 19 18 17 35 35 H 1.08997 * 109.47674 * 59.99515 * 20 18 17 36 36 H 1.08998 * 109.46989 * 179.97438 * 20 18 17 37 37 H 1.09006 * 109.47201 * 299.99294 * 20 18 17 38 38 H 1.09003 * 109.47353 * 81.63449 * 21 18 17 39 39 H 1.08996 * 109.47301 * 201.63874 * 21 18 17 40 40 H 1.09008 * 109.47154 * 321.63913 * 21 18 17 41 41 H 1.07996 * 126.03734 * 179.76810 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2456 1.0580 0.0000 4 6 3.5512 0.8793 -0.0005 5 6 4.5308 2.0244 -0.0012 6 8 5.8642 1.5106 -0.0022 7 6 6.8736 2.5141 -0.1290 8 1 6.4621 3.3800 -0.6478 9 6 8.0346 1.9623 -0.9155 10 1 8.0480 0.9203 -1.1994 11 6 9.0797 2.7875 -1.2728 12 7 9.0637 4.0562 -0.9268 13 14 10.5192 2.1032 -2.2471 14 1 10.2425 2.2383 -3.6997 15 1 11.7515 2.8581 -1.9056 16 1 10.7078 0.6693 -1.9103 17 6 7.3533 2.9337 1.2619 18 7 7.8797 1.7608 1.9728 19 6 9.0633 1.2513 1.2677 20 6 8.2519 2.1440 3.3412 21 6 6.8499 0.7143 2.0204 22 6 3.9354 -0.4007 -0.0058 23 16 2.4856 -1.4021 0.0006 24 1 -0.3633 -0.0001 -1.0276 25 1 -0.3633 -0.8899 0.5140 26 1 -0.3633 0.8900 0.5138 27 1 4.3757 2.6347 -0.8910 28 1 4.3771 2.6344 0.8890 29 1 9.7988 4.6369 -1.1784 30 1 8.1394 3.6825 1.1647 31 1 6.5185 3.3541 1.8227 32 1 9.6747 2.0890 0.9320 33 1 9.6458 0.6237 1.9421 34 1 8.7478 0.6635 0.4058 35 1 7.3736 2.5220 3.8644 36 1 8.6421 1.2736 3.8688 37 1 9.0161 2.9206 3.3060 38 1 6.8452 0.1660 1.0782 39 1 7.0668 0.0281 2.8390 40 1 5.8735 1.1722 2.1791 41 1 4.9545 -0.7582 -0.0107 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206447516.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:22 Heat of formation + Delta-G solvation = 106.504939 kcal Electronic energy + Delta-G solvation = -21819.322902 eV Core-core repulsion = 18752.226652 eV Total energy + Delta-G solvation = -3067.096250 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.138 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.71108 -40.88650 -38.47986 -35.41149 -33.47294 -31.33763 -29.67534 -29.37537 -29.27280 -28.14586 -27.46278 -24.34116 -23.63129 -22.71228 -20.62958 -19.32293 -18.70045 -17.96258 -17.74773 -17.31533 -16.72254 -16.65537 -16.55690 -15.74357 -15.52282 -15.17177 -14.44889 -14.36582 -14.20032 -13.89753 -13.67317 -13.52045 -13.34307 -13.24865 -13.04937 -13.01354 -12.92653 -12.81158 -12.70685 -12.60711 -12.46898 -12.15537 -11.96845 -11.37150 -10.73293 -10.63745 -10.43557 -10.35064 -9.57966 -8.45171 -6.46417 -0.22390 0.44298 0.79768 1.19600 1.35150 1.48453 1.55607 1.74664 2.18101 2.52363 2.88471 3.15265 3.22929 3.30155 3.52707 4.05253 4.10632 4.13388 4.26669 4.29583 4.34487 4.38097 4.46109 4.49536 4.52015 4.61172 4.65951 4.71712 4.74004 4.79492 4.85943 4.95155 4.97631 5.01840 5.18678 5.22233 5.30396 5.54241 5.80965 6.22086 6.66147 6.77892 7.19739 8.59608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.038 3.962 3 N -0.506 5.506 4 C 0.047 3.953 5 C 0.141 3.859 6 O -0.375 6.375 7 C 0.201 3.799 8 H 0.031 0.969 9 C -0.527 4.527 10 H 0.080 0.920 11 C 0.054 3.946 12 N -0.898 5.898 13 Si 0.920 3.080 14 H -0.305 1.305 15 H -0.292 1.292 16 H -0.248 1.248 17 C -0.003 4.003 18 N -0.239 5.239 19 C -0.034 4.034 20 C -0.044 4.044 21 C -0.028 4.028 22 C -0.235 4.235 23 S 0.141 5.859 24 H 0.093 0.907 25 H 0.101 0.899 26 H 0.088 0.912 27 H 0.048 0.952 28 H 0.079 0.921 29 H 0.271 0.729 30 H 0.124 0.876 31 H 0.113 0.887 32 H 0.088 0.912 33 H 0.118 0.882 34 H 0.128 0.872 35 H 0.123 0.877 36 H 0.137 0.863 37 H 0.108 0.892 38 H 0.115 0.885 39 H 0.128 0.872 40 H 0.104 0.896 41 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.456 -7.232 14.248 16.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.239 4.239 3 N -0.223 5.223 4 C -0.084 4.084 5 C 0.061 3.939 6 O -0.294 6.294 7 C 0.144 3.856 8 H 0.048 0.952 9 C -0.564 4.564 10 H 0.098 0.902 11 C -0.150 4.150 12 N -0.535 5.535 13 Si 0.748 3.252 14 H -0.232 1.232 15 H -0.219 1.219 16 H -0.171 1.171 17 C -0.126 4.126 18 N 0.103 4.897 19 C -0.175 4.175 20 C -0.185 4.185 21 C -0.169 4.169 22 C -0.374 4.374 23 S 0.395 5.605 24 H 0.112 0.888 25 H 0.120 0.880 26 H 0.107 0.893 27 H 0.066 0.934 28 H 0.097 0.903 29 H 0.081 0.919 30 H 0.142 0.858 31 H 0.131 0.869 32 H 0.107 0.893 33 H 0.136 0.864 34 H 0.146 0.854 35 H 0.141 0.859 36 H 0.155 0.845 37 H 0.127 0.873 38 H 0.133 0.867 39 H 0.146 0.854 40 H 0.122 0.878 41 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -3.760 -7.832 14.269 16.706 hybrid contribution 1.455 1.397 -1.447 2.482 sum -2.305 -6.435 12.822 14.530 Atomic orbital electron populations 1.20603 0.83463 1.05263 1.04786 1.27466 1.02969 0.91031 1.02440 1.65923 1.04952 1.33289 1.18132 1.20000 0.89647 0.94775 1.03931 1.20452 0.81211 0.90935 1.01254 1.87913 1.12833 1.34600 1.94084 1.19852 0.86089 0.88667 0.90997 0.95156 1.21142 1.02229 0.97348 1.35723 0.90237 1.25043 0.99772 0.94656 0.95480 1.69795 1.33354 1.04724 1.45596 0.86137 0.79945 0.80032 0.79061 1.23241 1.21855 1.17149 1.24177 1.03781 0.88202 0.96452 1.45517 1.15191 1.14582 1.14374 1.24518 0.87248 1.04226 1.01553 1.24230 1.06802 1.07285 0.80204 1.24256 0.92192 0.92177 1.08271 1.26994 1.04077 0.95186 1.11142 1.84016 0.97332 1.11675 1.67441 0.88831 0.88014 0.89288 0.93381 0.90295 0.91910 0.85844 0.86859 0.89276 0.86361 0.85408 0.85866 0.84514 0.87345 0.86698 0.85409 0.87786 0.78583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 0.33 10.46 71.24 0.75 1.08 16 2 C 0.04 0.06 7.39 88.52 0.65 0.71 16 3 N -0.51 -2.93 10.53 -179.40 -1.89 -4.82 16 4 C 0.05 0.13 6.74 41.52 0.28 0.41 16 5 C 0.14 0.14 6.05 71.24 0.43 0.57 16 6 O -0.37 0.44 4.72 -148.98 -0.70 -0.26 16 7 C 0.20 0.58 2.24 29.85 0.07 0.64 16 8 H 0.03 0.34 7.66 -2.38 -0.02 0.32 16 9 C -0.53 -4.62 5.29 25.60 0.14 -4.49 16 10 H 0.08 0.73 7.04 -2.91 -0.02 0.71 16 11 C 0.05 0.75 3.65 84.65 0.31 1.06 16 12 N -0.90 -15.32 11.76 21.45 0.25 -15.06 16 13 Si 0.92 13.33 29.54 68.60 2.03 15.35 16 14 H -0.30 -6.26 7.11 99.48 0.71 -5.56 16 15 H -0.29 -4.91 7.11 99.48 0.71 -4.20 16 16 H -0.25 -2.77 7.11 99.48 0.71 -2.06 16 17 C 0.00 0.02 4.06 86.30 0.35 0.37 16 18 N -0.24 3.84 0.05 ******* -0.07 3.77 16 19 C -0.03 0.39 6.89 127.69 0.88 1.27 16 20 C -0.04 1.03 7.85 127.69 1.00 2.03 16 21 C -0.03 0.50 7.00 127.69 0.89 1.39 16 22 C -0.24 0.16 10.56 66.78 0.71 0.87 16 23 S 0.14 -0.23 23.18 -56.49 -1.31 -1.54 16 24 H 0.09 -0.48 8.14 -2.39 -0.02 -0.50 16 25 H 0.10 -0.84 8.14 -2.39 -0.02 -0.86 16 26 H 0.09 -0.34 8.14 -2.39 -0.02 -0.36 16 27 H 0.05 0.29 7.96 -2.38 -0.02 0.27 16 28 H 0.08 -0.23 8.14 -2.39 -0.02 -0.25 16 29 H 0.27 5.16 8.31 -92.71 -0.77 4.39 16 30 H 0.12 -0.15 6.29 -2.39 -0.02 -0.17 16 31 H 0.11 -1.34 8.05 -2.39 -0.02 -1.36 16 32 H 0.09 -0.41 6.07 -2.39 -0.01 -0.43 16 33 H 0.12 -2.25 7.81 -2.39 -0.02 -2.27 16 34 H 0.13 -0.85 4.49 -2.39 -0.01 -0.86 16 35 H 0.12 -3.16 8.12 -2.39 -0.02 -3.18 16 36 H 0.14 -3.84 7.86 -2.39 -0.02 -3.86 16 37 H 0.11 -2.33 8.14 -2.38 -0.02 -2.35 16 38 H 0.11 -1.52 5.67 -2.39 -0.01 -1.53 16 39 H 0.13 -3.14 7.76 -2.39 -0.02 -3.16 16 40 H 0.10 -1.73 6.77 -2.38 -0.02 -1.75 16 41 H 0.20 -0.89 7.46 -2.91 -0.02 -0.91 16 Total: 0.00 -32.31 327.31 5.77 -26.54 By element: Atomic # 1 Polarization: -30.92 SS G_CDS: 1.01 Total: -29.91 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: 6.45 Total: 5.92 kcal Atomic # 7 Polarization: -14.40 SS G_CDS: -1.71 Total: -16.11 kcal Atomic # 8 Polarization: 0.44 SS G_CDS: -0.70 Total: -0.26 kcal Atomic # 14 Polarization: 13.33 SS G_CDS: 2.03 Total: 15.35 kcal Atomic # 16 Polarization: -0.23 SS G_CDS: -1.31 Total: -1.54 kcal Total: -32.31 5.77 -26.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206447516.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.045 kcal (2) G-P(sol) polarization free energy of solvation -32.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds