Wall clock time and date at job start Tue Mar 31 2020 05:23:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50697 * 119.99705 * 2 1 4 4 N 1.46501 * 109.47184 * 125.00125 * 3 2 1 5 5 C 1.34691 * 125.87201 * 124.99305 * 4 3 2 6 6 C 1.36625 * 107.59778 * 180.02562 * 5 4 3 7 7 C 1.48241 * 126.25017 * 180.02562 * 6 5 4 8 8 C 1.40134 * 119.52009 * 179.72816 * 7 6 5 9 9 C 1.38288 * 119.57280 * 180.27481 * 8 7 6 10 10 C 1.39142 * 118.64491 * 0.02562 * 9 8 7 11 11 O 1.35556 * 120.47862 * 180.02562 * 10 9 8 12 12 C 1.42900 * 116.99815 * 359.97438 * 11 10 9 13 13 C 1.41346 * 119.03959 * 359.97438 * 10 9 8 14 14 C 1.40968 * 119.83550 * 179.97438 * 13 10 9 15 15 H 1.07996 * 119.99607 * 0.02562 * 14 13 10 16 16 C 1.40007 * 120.00364 * 180.02562 * 14 13 10 17 17 N 1.30793 * 119.99825 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00169 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47067 * 89.99828 * 18 16 14 20 20 H 1.48494 * 109.46961 * 209.99860 * 18 16 14 21 21 H 1.48501 * 109.46982 * 329.99805 * 18 16 14 22 22 N 1.32174 * 119.52246 * 0.02562 * 7 6 5 23 23 C 1.40956 * 107.49302 * 0.26542 * 6 5 4 24 24 N 1.30623 * 108.06938 * 359.55135 * 23 6 5 25 25 H 1.07998 * 119.99575 * 180.02562 * 1 2 3 26 26 H 1.07998 * 119.99927 * 0.02562 * 1 2 3 27 27 H 1.07998 * 119.99927 * 179.97438 * 2 1 3 28 28 H 1.08988 * 109.47422 * 4.99721 * 3 2 1 29 29 H 1.09004 * 109.46944 * 244.99163 * 3 2 1 30 30 H 1.07999 * 126.19731 * 0.06490 * 5 4 3 31 31 H 1.08000 * 120.21009 * 0.27167 * 8 7 6 32 32 H 1.08003 * 120.67591 * 180.02562 * 9 8 7 33 33 H 1.09007 * 109.47040 * 179.97438 * 12 11 10 34 34 H 1.08994 * 109.47497 * 299.99667 * 12 11 10 35 35 H 1.08995 * 109.47219 * 60.00310 * 12 11 10 36 36 H 0.96999 * 119.99405 * 180.02562 * 17 16 14 37 37 H 1.08002 * 125.96148 * 179.69876 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3320 1.1314 5 6 4.3207 1.5511 1.0572 6 6 4.8205 1.4940 2.3274 7 6 6.2379 1.6778 2.7208 8 6 6.5954 1.5950 4.0732 9 6 7.9164 1.7719 4.4420 10 6 8.8572 2.0295 3.4497 11 8 10.1623 2.2085 3.7694 12 6 10.5093 2.1201 5.1528 13 6 8.4325 2.1007 2.1034 14 6 9.3713 2.3613 1.0847 15 1 10.4122 2.5055 1.3337 16 6 8.9544 2.4331 -0.2499 17 7 7.6938 2.2579 -0.5516 18 14 10.1984 2.7791 -1.5998 19 1 10.7536 1.4966 -2.1019 20 1 9.5322 3.5000 -2.7140 21 1 11.2985 3.6158 -1.0565 22 7 7.1451 1.9233 1.7915 23 6 3.7430 1.2228 3.1949 24 7 2.6564 1.1336 2.4756 25 1 -0.5399 -0.9353 0.0004 26 1 -0.5400 0.9353 -0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3586 2.1316 0.0895 29 1 2.6214 1.4026 -0.9314 30 1 4.8867 1.7388 0.1568 31 1 5.8441 1.3943 4.8227 32 1 8.2118 1.7115 5.4791 33 1 11.5810 2.2819 5.2696 34 1 9.9638 2.8791 5.7134 35 1 10.2483 1.1316 5.5305 36 1 7.4051 2.3073 -1.4763 37 1 3.8049 1.1109 4.2673 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222382935.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:35 Heat of formation + Delta-G solvation = 98.355012 kcal Electronic energy + Delta-G solvation = -21428.876173 eV Core-core repulsion = 18174.212392 eV Total energy + Delta-G solvation = -3254.663781 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.122 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.57186 -38.74301 -36.59618 -35.25618 -33.64403 -31.51390 -30.57365 -30.32191 -28.29356 -26.64361 -26.28443 -24.90434 -21.78184 -21.69655 -20.58629 -19.67826 -19.38792 -17.55515 -16.65977 -16.37869 -15.55637 -15.20173 -14.90266 -14.69862 -14.68855 -14.10535 -13.60691 -13.12780 -13.11008 -12.80532 -12.45476 -12.23347 -12.09856 -11.89509 -11.41984 -11.24165 -11.19691 -11.17146 -10.64624 -10.50611 -10.39350 -10.21703 -9.76691 -9.61908 -9.41860 -8.89896 -8.26835 -8.02825 -7.69524 -6.66613 -6.41463 -4.35794 1.97777 2.29325 2.66865 2.89459 3.10382 3.11154 3.15279 3.18984 3.80638 3.98404 4.48245 4.67482 4.84229 4.86518 5.09086 5.44301 5.47355 5.62748 5.74447 5.74946 5.76480 5.91067 5.96491 5.97821 6.08024 6.21972 6.34292 6.42401 6.53049 6.55655 6.89628 7.00303 7.12247 7.23765 7.45284 7.55053 7.67858 7.97304 8.23592 8.26575 8.35737 8.74790 9.06190 10.08590 10.32509 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.014649 B = 0.005213 C = 0.003893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.973450 B = 5370.231119 C = 7190.280643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.161 4.161 3 C 0.165 3.835 4 N -0.382 5.382 5 C 0.093 3.907 6 C -0.170 4.170 7 C 0.198 3.802 8 C -0.276 4.276 9 C -0.143 4.143 10 C -0.039 4.039 11 O -0.310 6.310 12 C 0.034 3.966 13 C 0.258 3.742 14 C -0.415 4.415 15 H 0.089 0.911 16 C 0.070 3.930 17 N -0.722 5.722 18 Si 0.908 3.092 19 H -0.270 1.270 20 H -0.278 1.278 21 H -0.261 1.261 22 N -0.459 5.459 23 C 0.060 3.940 24 N -0.311 5.311 25 H 0.101 0.899 26 H 0.098 0.902 27 H 0.113 0.887 28 H 0.083 0.917 29 H 0.104 0.896 30 H 0.189 0.811 31 H 0.096 0.904 32 H 0.102 0.898 33 H 0.082 0.918 34 H 0.039 0.961 35 H 0.039 0.961 36 H 0.269 0.731 37 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.936 -1.634 0.336 7.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.180 4.180 3 C 0.043 3.957 4 N -0.164 5.164 5 C -0.053 4.053 6 C -0.181 4.181 7 C 0.055 3.945 8 C -0.299 4.299 9 C -0.167 4.167 10 C -0.087 4.087 11 O -0.223 6.223 12 C -0.062 4.062 13 C 0.131 3.869 14 C -0.447 4.447 15 H 0.107 0.893 16 C -0.154 4.154 17 N -0.344 5.344 18 Si 0.732 3.268 19 H -0.195 1.195 20 H -0.203 1.203 21 H -0.185 1.185 22 N -0.174 5.174 23 C -0.127 4.127 24 N -0.132 5.132 25 H 0.119 0.881 26 H 0.116 0.884 27 H 0.131 0.869 28 H 0.101 0.899 29 H 0.122 0.878 30 H 0.206 0.794 31 H 0.114 0.886 32 H 0.120 0.880 33 H 0.100 0.900 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.080 0.920 37 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -8.492 -1.725 -0.950 8.717 hybrid contribution 1.560 0.111 0.733 1.727 sum -6.932 -1.614 -0.216 7.121 Atomic orbital electron populations 1.23829 0.95578 1.02063 0.99455 1.23030 0.96195 0.98189 1.00602 1.20680 0.91925 0.96459 0.86597 1.48349 1.06150 1.56453 1.05441 1.22950 0.83073 0.98283 1.00958 1.18786 0.93259 1.14411 0.91676 1.18948 0.90550 0.95748 0.89240 1.20871 0.95190 1.18163 0.95721 1.20843 0.93941 1.05106 0.96824 1.20301 0.82355 1.10708 0.95376 1.85935 1.24227 1.88208 1.23950 1.22735 1.00198 0.99887 0.83408 1.18088 0.89710 0.91902 0.87245 1.19494 0.95388 1.39777 0.90071 0.89252 1.26013 0.95632 0.93809 0.99941 1.70141 1.15457 1.29919 1.18898 0.86318 0.81230 0.79310 0.79913 1.19513 1.20284 1.18527 1.68896 0.99340 1.17755 1.31454 1.23896 0.89706 0.99281 0.99838 1.77067 1.23657 1.25425 0.87034 0.88109 0.88357 0.86927 0.89906 0.87801 0.79393 0.88570 0.87996 0.89998 0.94250 0.94259 0.91993 0.80439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.67 14.32 29.01 0.42 -1.26 16 2 C -0.16 -1.88 9.69 -36.03 -0.35 -2.23 16 3 C 0.16 2.06 6.94 -5.19 -0.04 2.03 16 4 N -0.38 -6.54 3.66 -62.27 -0.23 -6.77 16 5 C 0.09 1.84 11.14 -16.88 -0.19 1.65 16 6 C -0.17 -3.63 6.06 -105.34 -0.64 -4.27 16 7 C 0.20 4.82 6.76 -82.90 -0.56 4.26 16 8 C -0.28 -6.26 9.61 -38.85 -0.37 -6.64 16 9 C -0.14 -3.24 9.11 -39.23 -0.36 -3.60 16 10 C -0.04 -0.98 6.74 -38.06 -0.26 -1.24 16 11 O -0.31 -7.12 9.61 -18.36 -0.18 -7.30 16 12 C 0.03 0.58 9.83 101.05 0.99 1.57 16 13 C 0.26 7.10 6.56 -84.86 -0.56 6.54 16 14 C -0.42 -11.18 8.94 -37.89 -0.34 -11.52 16 15 H 0.09 2.35 7.31 -52.49 -0.38 1.97 16 16 C 0.07 1.75 5.50 -17.33 -0.10 1.65 16 17 N -0.72 -18.17 11.45 55.55 0.64 -17.54 16 18 Si 0.91 18.49 29.56 -169.99 -5.02 13.47 16 19 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 20 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 21 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 22 N -0.46 -12.34 7.53 -7.56 -0.06 -12.39 16 23 C 0.06 1.13 11.40 -17.04 -0.19 0.94 16 24 N -0.31 -5.74 12.36 30.82 0.38 -5.36 16 25 H 0.10 0.85 8.06 -52.49 -0.42 0.43 16 26 H 0.10 0.85 7.84 -52.49 -0.41 0.44 16 27 H 0.11 1.38 8.06 -52.49 -0.42 0.95 16 28 H 0.08 0.93 7.79 -51.94 -0.40 0.52 16 29 H 0.10 1.10 8.07 -51.93 -0.42 0.68 16 30 H 0.19 3.76 8.06 -52.49 -0.42 3.34 16 31 H 0.10 1.90 7.00 -52.49 -0.37 1.53 16 32 H 0.10 1.99 6.43 -52.48 -0.34 1.65 16 33 H 0.08 1.13 8.14 -51.92 -0.42 0.70 16 34 H 0.04 0.62 7.69 -51.93 -0.40 0.22 16 35 H 0.04 0.62 7.69 -51.93 -0.40 0.22 16 36 H 0.27 6.08 8.29 -40.82 -0.34 5.75 16 37 H 0.18 2.84 7.31 -52.49 -0.38 2.46 16 LS Contribution 325.83 15.07 4.91 4.91 Total: -1.00 -30.86 325.83 -6.43 -37.28 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -4.33 Total: 5.81 kcal Atomic # 6 Polarization: -9.58 SS G_CDS: -2.54 Total: -12.11 kcal Atomic # 7 Polarization: -42.79 SS G_CDS: 0.73 Total: -42.05 kcal Atomic # 8 Polarization: -7.12 SS G_CDS: -0.18 Total: -7.30 kcal Atomic # 14 Polarization: 18.49 SS G_CDS: -5.02 Total: 13.47 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.86 -6.43 -37.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222382935.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.636 kcal (2) G-P(sol) polarization free energy of solvation -30.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds