Wall clock time and date at job start Tue Mar 31 2020 05:23:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50697 * 119.99705 * 2 1 4 4 N 1.46501 * 109.47184 * 125.00125 * 3 2 1 5 5 C 1.34691 * 125.87201 * 124.99305 * 4 3 2 6 6 C 1.36625 * 107.59778 * 180.02562 * 5 4 3 7 7 C 1.48241 * 126.25017 * 180.02562 * 6 5 4 8 8 C 1.40134 * 119.52009 * 179.72816 * 7 6 5 9 9 C 1.38288 * 119.57280 * 180.27481 * 8 7 6 10 10 C 1.39142 * 118.64491 * 0.02562 * 9 8 7 11 11 O 1.35556 * 120.47862 * 180.02562 * 10 9 8 12 12 C 1.42900 * 116.99815 * 359.97438 * 11 10 9 13 13 C 1.41346 * 119.03959 * 359.97438 * 10 9 8 14 14 C 1.40968 * 119.83550 * 179.97438 * 13 10 9 15 15 H 1.07996 * 119.99607 * 0.02562 * 14 13 10 16 16 C 1.40007 * 120.00364 * 180.02562 * 14 13 10 17 17 N 1.30793 * 119.99825 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00169 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47067 * 89.99828 * 18 16 14 20 20 H 1.48494 * 109.46961 * 209.99860 * 18 16 14 21 21 H 1.48501 * 109.46982 * 329.99805 * 18 16 14 22 22 N 1.32174 * 119.52246 * 0.02562 * 7 6 5 23 23 C 1.40956 * 107.49302 * 0.26542 * 6 5 4 24 24 N 1.30623 * 108.06938 * 359.55135 * 23 6 5 25 25 H 1.07998 * 119.99575 * 180.02562 * 1 2 3 26 26 H 1.07998 * 119.99927 * 0.02562 * 1 2 3 27 27 H 1.07998 * 119.99927 * 179.97438 * 2 1 3 28 28 H 1.08988 * 109.47422 * 4.99721 * 3 2 1 29 29 H 1.09004 * 109.46944 * 244.99163 * 3 2 1 30 30 H 1.07999 * 126.19731 * 0.06490 * 5 4 3 31 31 H 1.08000 * 120.21009 * 0.27167 * 8 7 6 32 32 H 1.08003 * 120.67591 * 180.02562 * 9 8 7 33 33 H 1.09007 * 109.47040 * 179.97438 * 12 11 10 34 34 H 1.08994 * 109.47497 * 299.99667 * 12 11 10 35 35 H 1.08995 * 109.47219 * 60.00310 * 12 11 10 36 36 H 0.96999 * 119.99405 * 180.02562 * 17 16 14 37 37 H 1.08002 * 125.96148 * 179.69876 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3320 1.1314 5 6 4.3207 1.5511 1.0572 6 6 4.8205 1.4940 2.3274 7 6 6.2379 1.6778 2.7208 8 6 6.5954 1.5950 4.0732 9 6 7.9164 1.7719 4.4420 10 6 8.8572 2.0295 3.4497 11 8 10.1623 2.2085 3.7694 12 6 10.5093 2.1201 5.1528 13 6 8.4325 2.1007 2.1034 14 6 9.3713 2.3613 1.0847 15 1 10.4122 2.5055 1.3337 16 6 8.9544 2.4331 -0.2499 17 7 7.6938 2.2579 -0.5516 18 14 10.1984 2.7791 -1.5998 19 1 10.7536 1.4966 -2.1019 20 1 9.5322 3.5000 -2.7140 21 1 11.2985 3.6158 -1.0565 22 7 7.1451 1.9233 1.7915 23 6 3.7430 1.2228 3.1949 24 7 2.6564 1.1336 2.4756 25 1 -0.5399 -0.9353 0.0004 26 1 -0.5400 0.9353 -0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3586 2.1316 0.0895 29 1 2.6214 1.4026 -0.9314 30 1 4.8867 1.7388 0.1568 31 1 5.8441 1.3943 4.8227 32 1 8.2118 1.7115 5.4791 33 1 11.5810 2.2819 5.2696 34 1 9.9638 2.8791 5.7134 35 1 10.2483 1.1316 5.5305 36 1 7.4051 2.3073 -1.4763 37 1 3.8049 1.1109 4.2673 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222382935.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:34 Heat of formation + Delta-G solvation = 80.020198 kcal Electronic energy + Delta-G solvation = -21429.671230 eV Core-core repulsion = 18174.212392 eV Total energy + Delta-G solvation = -3255.458838 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.122 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.02567 -40.49345 -38.31004 -36.30987 -35.45189 -32.82828 -32.21136 -32.09663 -29.88510 -28.03090 -27.86075 -26.41537 -23.43857 -23.43166 -21.85104 -21.11956 -20.66059 -19.31305 -18.31929 -17.97321 -17.22983 -16.46546 -16.28313 -16.18390 -16.08412 -15.70744 -14.91904 -14.75797 -14.45315 -14.32174 -14.05715 -13.78028 -13.48810 -13.28855 -12.90980 -12.83888 -12.79230 -12.45933 -12.24556 -12.08031 -11.93998 -11.74977 -11.44310 -11.22043 -10.54582 -10.27179 -9.96242 -9.80040 -9.54894 -8.41139 -8.23893 -6.28511 0.60640 1.03237 1.08753 1.18388 1.44208 1.53092 1.57385 1.91475 2.14488 2.28951 2.91950 3.00500 3.61518 3.89726 4.02361 4.06789 4.08894 4.25523 4.31912 4.36800 4.43649 4.51364 4.59214 4.65662 4.75781 4.77278 4.90213 4.96502 5.16058 5.29799 5.39941 5.58580 5.60673 5.65837 5.73839 5.83264 6.16670 6.20657 6.38569 6.48582 6.79405 6.88376 7.23717 8.22468 8.52148 Molecular weight = 285.12amu Principal moments of inertia in cm(-1) A = 0.014649 B = 0.005213 C = 0.003893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.973450 B = 5370.231119 C = 7190.280643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.187 4.187 3 C 0.154 3.846 4 N -0.371 5.371 5 C 0.093 3.907 6 C -0.202 4.202 7 C 0.176 3.824 8 C -0.274 4.274 9 C -0.142 4.142 10 C -0.060 4.060 11 O -0.335 6.335 12 C 0.026 3.974 13 C 0.220 3.780 14 C -0.455 4.455 15 H 0.080 0.920 16 C 0.029 3.971 17 N -0.749 5.749 18 Si 0.982 3.018 19 H -0.265 1.265 20 H -0.265 1.265 21 H -0.263 1.263 22 N -0.484 5.484 23 C 0.063 3.937 24 N -0.314 5.314 25 H 0.116 0.884 26 H 0.113 0.887 27 H 0.101 0.899 28 H 0.101 0.899 29 H 0.119 0.881 30 H 0.179 0.821 31 H 0.129 0.871 32 H 0.136 0.864 33 H 0.112 0.888 34 H 0.050 0.950 35 H 0.050 0.950 36 H 0.278 0.722 37 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.145 -1.756 0.724 8.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.206 4.206 3 C 0.035 3.965 4 N -0.152 5.152 5 C -0.055 4.055 6 C -0.214 4.214 7 C 0.034 3.966 8 C -0.297 4.297 9 C -0.166 4.166 10 C -0.108 4.108 11 O -0.249 6.249 12 C -0.070 4.070 13 C 0.092 3.908 14 C -0.487 4.487 15 H 0.098 0.902 16 C -0.192 4.192 17 N -0.372 5.372 18 Si 0.803 3.197 19 H -0.190 1.190 20 H -0.189 1.189 21 H -0.187 1.187 22 N -0.199 5.199 23 C -0.124 4.124 24 N -0.134 5.134 25 H 0.134 0.866 26 H 0.131 0.869 27 H 0.119 0.881 28 H 0.119 0.881 29 H 0.137 0.863 30 H 0.196 0.804 31 H 0.146 0.854 32 H 0.154 0.846 33 H 0.130 0.870 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.088 0.912 37 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -9.742 -1.857 -0.547 9.932 hybrid contribution 1.793 0.113 0.713 1.933 sum -7.949 -1.744 0.166 8.140 Atomic orbital electron populations 1.24094 0.94865 1.03545 0.96024 1.22894 0.96860 0.97158 1.03716 1.21103 0.91889 0.97820 0.85679 1.48707 1.05773 1.54675 1.06074 1.22816 0.84301 0.98107 1.00291 1.18873 0.92668 1.16779 0.93100 1.19496 0.91604 0.95534 0.89963 1.21294 0.96062 1.16463 0.95901 1.21218 0.93532 1.03766 0.98067 1.20378 0.83750 1.11350 0.95294 1.85875 1.23239 1.88279 1.27534 1.23085 1.02293 1.00910 0.80663 1.18526 0.90411 0.92945 0.88891 1.19664 0.95144 1.42299 0.91586 0.90161 1.26794 0.97662 0.93258 1.01503 1.70200 1.16917 1.30130 1.19907 0.85220 0.78497 0.79165 0.76856 1.19004 1.18898 1.18705 1.68836 0.99624 1.18555 1.32910 1.24187 0.88624 0.98706 1.00869 1.77024 1.23550 1.25272 0.87592 0.86557 0.86880 0.88079 0.88080 0.86303 0.80376 0.85353 0.84603 0.86958 0.93121 0.93129 0.91151 0.77958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 14.32 67.77 0.97 -1.50 16 2 C -0.19 -4.06 9.69 25.64 0.25 -3.81 16 3 C 0.15 3.65 6.94 85.63 0.59 4.24 16 4 N -0.37 -12.41 3.66 -350.92 -1.28 -13.69 16 5 C 0.09 3.71 11.14 83.88 0.93 4.65 16 6 C -0.20 -8.70 6.06 -20.33 -0.12 -8.83 16 7 C 0.18 8.73 6.76 42.21 0.29 9.02 16 8 C -0.27 -12.25 9.61 22.74 0.22 -12.03 16 9 C -0.14 -6.32 9.11 22.50 0.21 -6.12 16 10 C -0.06 -3.05 6.74 23.25 0.16 -2.89 16 11 O -0.34 -15.57 9.61 -88.62 -0.85 -16.42 16 12 C 0.03 0.83 9.83 113.37 1.11 1.94 16 13 C 0.22 12.61 6.56 40.30 0.26 12.87 16 14 C -0.45 -25.64 8.94 23.37 0.21 -25.43 16 15 H 0.08 4.46 7.31 -2.91 -0.02 4.44 16 16 C 0.03 1.50 5.50 85.28 0.47 1.97 16 17 N -0.75 -39.00 11.45 21.84 0.25 -38.75 16 18 Si 0.98 38.83 29.56 68.60 2.03 40.86 16 19 H -0.27 -10.18 7.11 99.48 0.71 -9.47 16 20 H -0.26 -9.78 7.11 99.48 0.71 -9.08 16 21 H -0.26 -10.33 7.11 99.48 0.71 -9.63 16 22 N -0.48 -26.98 7.53 -177.84 -1.34 -28.32 16 23 C 0.06 2.30 11.40 85.54 0.98 3.27 16 24 N -0.31 -11.11 12.36 -56.41 -0.70 -11.81 16 25 H 0.12 1.60 8.06 -2.91 -0.02 1.57 16 26 H 0.11 1.57 7.84 -2.91 -0.02 1.55 16 27 H 0.10 2.41 8.06 -2.91 -0.02 2.39 16 28 H 0.10 2.03 7.79 -2.39 -0.02 2.01 16 29 H 0.12 2.39 8.07 -2.38 -0.02 2.37 16 30 H 0.18 7.44 8.06 -2.91 -0.02 7.41 16 31 H 0.13 4.76 7.00 -2.91 -0.02 4.74 16 32 H 0.14 4.97 6.43 -2.91 -0.02 4.95 16 33 H 0.11 2.86 8.14 -2.38 -0.02 2.84 16 34 H 0.05 1.50 7.69 -2.39 -0.02 1.48 16 35 H 0.05 1.50 7.69 -2.39 -0.02 1.48 16 36 H 0.28 12.89 8.29 -92.71 -0.77 12.12 16 37 H 0.20 6.00 7.31 -2.91 -0.02 5.98 16 Total: -1.00 -69.32 325.83 5.71 -63.61 By element: Atomic # 1 Polarization: 26.08 SS G_CDS: 1.08 Total: 27.17 kcal Atomic # 6 Polarization: -29.17 SS G_CDS: 6.52 Total: -22.65 kcal Atomic # 7 Polarization: -89.50 SS G_CDS: -3.07 Total: -92.57 kcal Atomic # 8 Polarization: -15.57 SS G_CDS: -0.85 Total: -16.42 kcal Atomic # 14 Polarization: 38.83 SS G_CDS: 2.03 Total: 40.86 kcal Total: -69.32 5.71 -63.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222382935.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.630 kcal (2) G-P(sol) polarization free energy of solvation -69.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds