Wall clock time and date at job start Tue Mar 31 2020 06:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45196 * 109.47616 * 2 1 4 4 C 1.34231 * 117.00151 * 179.97438 * 3 2 1 5 5 O 1.20822 * 119.99947 * 359.97438 * 4 3 2 6 6 C 1.50702 * 119.99761 * 180.02562 * 4 3 2 7 7 C 1.52997 * 109.46973 * 180.02562 * 6 4 3 8 8 H 1.08996 * 109.47298 * 54.99538 * 7 6 4 9 9 C 1.50698 * 109.47298 * 175.00108 * 7 6 4 10 10 H 1.08004 * 119.99854 * 239.99965 * 9 7 6 11 11 C 1.37873 * 120.00226 * 59.99503 * 9 7 6 12 12 N 1.31515 * 119.99970 * 0.02562 * 11 9 7 13 13 Si 1.86803 * 120.00142 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.47145 * 90.00051 * 13 11 9 15 15 H 1.48501 * 109.46885 * 209.99900 * 13 11 9 16 16 H 1.48496 * 109.47100 * 329.99768 * 13 11 9 17 17 O 1.42906 * 109.46852 * 294.99703 * 7 6 4 18 18 C 1.42903 * 113.99640 * 149.99817 * 17 7 6 19 19 C 1.53006 * 109.46700 * 179.97438 * 18 17 7 20 20 H 1.08995 * 110.21574 * 53.07418 * 19 18 17 21 21 C 1.54480 * 110.24341 * 175.00238 * 19 18 17 22 22 C 1.54637 * 101.79655 * 144.39766 * 21 19 18 23 23 C 1.51339 * 104.16489 * 335.24730 * 22 21 19 24 24 O 1.21283 * 124.92513 * 196.22783 * 23 22 21 25 25 N 1.34412 * 110.13391 * 16.20052 * 23 22 21 26 26 H 1.09007 * 109.46879 * 59.99890 * 1 2 3 27 27 H 1.08993 * 109.47737 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46809 * 300.00428 * 1 2 3 29 29 H 1.08997 * 109.47158 * 239.99106 * 2 1 3 30 30 H 1.09007 * 109.46879 * 120.00110 * 2 1 3 31 31 H 1.08994 * 109.47151 * 59.99782 * 6 4 3 32 32 H 1.09003 * 109.47162 * 300.00082 * 6 4 3 33 33 H 0.97002 * 120.00262 * 179.97438 * 12 11 9 34 34 H 1.09003 * 109.46851 * 60.00472 * 18 17 7 35 35 H 1.08994 * 109.47391 * 299.99992 * 18 17 7 36 36 H 1.09002 * 110.96988 * 262.53624 * 21 19 18 37 37 H 1.09003 * 110.97155 * 26.26136 * 21 19 18 38 38 H 1.09001 * 110.48391 * 93.89928 * 22 21 19 39 39 H 1.08997 * 110.48457 * 216.54082 * 22 21 19 40 40 H 0.97001 * 124.35121 * 180.45650 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5447 0.0005 5 8 4.0808 0.5864 0.0015 6 6 3.9209 2.9373 0.0012 7 6 5.4487 2.8571 0.0010 8 1 5.7807 2.2498 -0.8410 9 6 6.0246 4.2443 -0.1221 10 1 6.6593 4.4931 -0.9598 11 6 5.7410 5.1959 0.8344 12 7 4.9683 4.8929 1.8546 13 14 6.4542 6.9156 0.6813 14 1 5.5191 7.7723 -0.0914 15 1 6.6499 7.4927 2.0355 16 1 7.7604 6.8490 -0.0219 17 8 5.8946 2.2630 1.2219 18 6 7.1177 1.5341 1.1007 19 6 7.4976 0.9456 2.4611 20 1 6.6655 0.3715 2.8687 21 6 8.7492 0.0504 2.3256 22 6 9.4788 0.3228 3.6615 23 6 8.9864 1.6912 4.0801 24 8 9.5134 2.3926 4.9175 25 7 7.8807 2.0165 3.3886 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5140 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 3.5846 3.4691 0.8911 32 1 3.5852 3.4697 -0.8888 33 1 4.7691 5.5623 2.5278 34 1 7.9079 2.2040 0.7617 35 1 6.9902 0.7278 0.3785 36 1 8.4703 -0.9999 2.2405 37 1 9.3601 0.3596 1.4774 38 1 9.2045 -0.4252 4.4054 39 1 10.5583 0.3346 3.5111 40 1 7.3980 2.8519 3.4895 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222580357.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:56 Heat of formation + Delta-G solvation = -180.139525 kcal Electronic energy + Delta-G solvation = -23358.970607 eV Core-core repulsion = 19752.628726 eV Total energy + Delta-G solvation = -3606.341881 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.89095 -39.71075 -37.08591 -36.12765 -35.45412 -32.90891 -31.57805 -30.93302 -30.28844 -28.47939 -26.11890 -23.68132 -23.09350 -21.63400 -20.92285 -20.02973 -19.78670 -17.17081 -16.81346 -16.53388 -16.29691 -16.09099 -15.54106 -15.01894 -14.65744 -14.45909 -13.85583 -13.71906 -13.46354 -13.19002 -12.89782 -12.80281 -12.46956 -12.38199 -12.13053 -11.81625 -11.69520 -11.30826 -11.14997 -11.04722 -10.92079 -10.80432 -10.63966 -10.52423 -10.13075 -9.93928 -9.60760 -9.47373 -9.27069 -8.67715 -8.56385 -8.00700 -6.14083 -4.32801 2.97521 3.05703 3.21751 3.32049 3.32934 3.37326 3.89042 4.31121 4.49827 4.70956 4.81150 5.07556 5.10874 5.15045 5.24534 5.38933 5.48351 5.49401 5.71247 5.73990 5.87012 5.88846 5.94192 5.96400 6.07967 6.15811 6.29548 6.44709 6.60493 6.65786 6.90589 7.03939 7.30544 7.43268 7.58215 7.73389 8.05894 8.50229 8.58313 8.70688 8.91047 9.44110 10.87202 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.010957 B = 0.006300 C = 0.004366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2554.886716 B = 4443.147234 C = 6412.082572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.060 3.940 3 O -0.368 6.368 4 C 0.459 3.541 5 O -0.518 6.518 6 C -0.102 4.102 7 C 0.235 3.765 8 H 0.015 0.985 9 C -0.559 4.559 10 H 0.060 0.940 11 C 0.088 3.912 12 N -0.858 5.858 13 Si 0.888 3.112 14 H -0.279 1.279 15 H -0.284 1.284 16 H -0.274 1.274 17 O -0.364 6.364 18 C 0.068 3.932 19 C 0.135 3.865 20 H 0.083 0.917 21 C -0.127 4.127 22 C -0.155 4.155 23 C 0.512 3.488 24 O -0.553 6.553 25 N -0.706 5.706 26 H 0.063 0.937 27 H 0.072 0.928 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.138 0.862 32 H 0.093 0.907 33 H 0.264 0.736 34 H 0.045 0.955 35 H 0.043 0.957 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.099 0.901 39 H 0.097 0.903 40 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.454 -10.400 -2.263 10.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.015 4.015 3 O -0.286 6.286 4 C 0.304 3.696 5 O -0.406 6.406 6 C -0.140 4.140 7 C 0.178 3.822 8 H 0.033 0.967 9 C -0.597 4.597 10 H 0.078 0.922 11 C -0.119 4.119 12 N -0.494 5.494 13 Si 0.715 3.285 14 H -0.204 1.204 15 H -0.210 1.210 16 H -0.199 1.199 17 O -0.283 6.283 18 C -0.011 4.011 19 C 0.030 3.970 20 H 0.100 0.900 21 C -0.165 4.165 22 C -0.195 4.195 23 C 0.297 3.703 24 O -0.433 6.433 25 N -0.361 5.361 26 H 0.083 0.917 27 H 0.091 0.909 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.155 0.845 32 H 0.112 0.888 33 H 0.074 0.926 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.107 0.893 37 H 0.102 0.898 38 H 0.118 0.882 39 H 0.115 0.885 40 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -2.131 -10.370 -1.508 10.693 hybrid contribution 0.182 1.096 -0.299 1.151 sum -1.949 -9.274 -1.807 9.647 Atomic orbital electron populations 1.21779 0.93411 1.02266 1.03316 1.22825 0.94795 0.81965 1.01890 1.86595 1.26444 1.30823 1.84775 1.24990 0.79259 0.94434 0.70884 1.90538 1.60225 1.43690 1.46114 1.21909 0.97803 0.87688 1.06605 1.19300 0.87886 0.91885 0.83092 0.96743 1.21466 1.32560 0.95860 1.09786 0.92204 1.24970 0.93929 0.98418 0.94561 1.69873 1.34717 1.33985 1.10842 0.86674 0.79716 0.84440 0.77638 1.20448 1.20977 1.19872 1.87963 1.36701 1.68628 1.34995 1.22371 0.90257 0.94800 0.93633 1.21725 0.96480 0.88081 0.90722 0.89955 1.22635 0.96050 1.00501 0.97364 1.22332 1.02297 0.96301 0.98577 1.20872 0.80595 0.88257 0.80539 1.90710 1.60959 1.57444 1.34146 1.46370 1.28279 1.21211 1.40238 0.91743 0.90904 0.91621 0.91994 0.91823 0.84482 0.88842 0.92608 0.93721 0.93855 0.89305 0.89842 0.88229 0.88460 0.73718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 10.29 37.16 0.38 -1.21 16 2 C 0.06 0.84 6.19 37.16 0.23 1.07 16 3 O -0.37 -6.66 10.22 -39.26 -0.40 -7.06 16 4 C 0.46 9.44 7.84 36.01 0.28 9.72 16 5 O -0.52 -11.31 15.17 -24.06 -0.36 -11.67 16 6 C -0.10 -2.25 5.22 -27.88 -0.15 -2.39 16 7 C 0.23 5.53 1.82 -27.89 -0.05 5.48 16 8 H 0.01 0.34 7.60 -51.93 -0.39 -0.05 16 9 C -0.56 -14.18 8.90 -34.44 -0.31 -14.48 16 10 H 0.06 1.52 7.81 -52.48 -0.41 1.11 16 11 C 0.09 2.23 5.24 -17.82 -0.09 2.14 16 12 N -0.86 -22.27 10.93 55.43 0.61 -21.67 16 13 Si 0.89 20.16 29.54 -169.99 -5.02 15.14 16 14 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 15 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 16 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 17 O -0.36 -8.43 8.61 -49.70 -0.43 -8.86 16 18 C 0.07 1.31 5.30 37.16 0.20 1.51 16 19 C 0.14 2.20 3.79 -67.01 -0.25 1.95 16 20 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 21 C -0.13 -1.54 6.68 -25.09 -0.17 -1.70 16 22 C -0.15 -1.94 6.86 -26.71 -0.18 -2.13 16 23 C 0.51 9.10 8.43 -10.84 -0.09 9.01 16 24 O -0.55 -11.99 18.03 5.56 0.10 -11.88 16 25 N -0.71 -12.91 5.88 -52.74 -0.31 -13.22 16 26 H 0.06 0.65 8.14 -51.92 -0.42 0.23 16 27 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.84 8.13 -51.93 -0.42 0.42 16 30 H 0.06 0.91 8.13 -51.92 -0.42 0.49 16 31 H 0.14 3.30 6.22 -51.93 -0.32 2.98 16 32 H 0.09 1.91 8.14 -51.93 -0.42 1.48 16 33 H 0.26 6.64 8.31 -40.82 -0.34 6.30 16 34 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.04 0.80 8.08 -51.93 -0.42 0.38 16 36 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.08 0.96 7.91 -51.93 -0.41 0.55 16 38 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.42 8.70 8.96 -40.82 -0.37 8.34 16 LS Contribution 340.71 15.07 5.13 5.13 Total: -1.00 -30.19 340.71 -6.99 -37.19 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -6.11 Total: 7.94 kcal Atomic # 6 Polarization: 9.16 SS G_CDS: -0.20 Total: 8.96 kcal Atomic # 7 Polarization: -35.18 SS G_CDS: 0.30 Total: -34.89 kcal Atomic # 8 Polarization: -38.38 SS G_CDS: -1.09 Total: -39.47 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.19 -6.99 -37.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222580357.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.954 kcal (2) G-P(sol) polarization free energy of solvation -30.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds