Wall clock time and date at job start Tue Mar 31 2020 06:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45196 * 109.47616 * 2 1 4 4 C 1.34231 * 117.00151 * 179.97438 * 3 2 1 5 5 O 1.20822 * 119.99947 * 359.97438 * 4 3 2 6 6 C 1.50702 * 119.99761 * 180.02562 * 4 3 2 7 7 C 1.52997 * 109.46973 * 180.02562 * 6 4 3 8 8 H 1.08996 * 109.47298 * 54.99538 * 7 6 4 9 9 C 1.50698 * 109.47298 * 175.00108 * 7 6 4 10 10 H 1.08004 * 119.99854 * 239.99965 * 9 7 6 11 11 C 1.37873 * 120.00226 * 59.99503 * 9 7 6 12 12 N 1.31515 * 119.99970 * 0.02562 * 11 9 7 13 13 Si 1.86803 * 120.00142 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.47145 * 90.00051 * 13 11 9 15 15 H 1.48501 * 109.46885 * 209.99900 * 13 11 9 16 16 H 1.48496 * 109.47100 * 329.99768 * 13 11 9 17 17 O 1.42906 * 109.46852 * 294.99703 * 7 6 4 18 18 C 1.42903 * 113.99640 * 149.99817 * 17 7 6 19 19 C 1.53006 * 109.46700 * 179.97438 * 18 17 7 20 20 H 1.08995 * 110.21574 * 53.07418 * 19 18 17 21 21 C 1.54480 * 110.24341 * 175.00238 * 19 18 17 22 22 C 1.54637 * 101.79655 * 144.39766 * 21 19 18 23 23 C 1.51339 * 104.16489 * 335.24730 * 22 21 19 24 24 O 1.21283 * 124.92513 * 196.22783 * 23 22 21 25 25 N 1.34412 * 110.13391 * 16.20052 * 23 22 21 26 26 H 1.09007 * 109.46879 * 59.99890 * 1 2 3 27 27 H 1.08993 * 109.47737 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46809 * 300.00428 * 1 2 3 29 29 H 1.08997 * 109.47158 * 239.99106 * 2 1 3 30 30 H 1.09007 * 109.46879 * 120.00110 * 2 1 3 31 31 H 1.08994 * 109.47151 * 59.99782 * 6 4 3 32 32 H 1.09003 * 109.47162 * 300.00082 * 6 4 3 33 33 H 0.97002 * 120.00262 * 179.97438 * 12 11 9 34 34 H 1.09003 * 109.46851 * 60.00472 * 18 17 7 35 35 H 1.08994 * 109.47391 * 299.99992 * 18 17 7 36 36 H 1.09002 * 110.96988 * 262.53624 * 21 19 18 37 37 H 1.09003 * 110.97155 * 26.26136 * 21 19 18 38 38 H 1.09001 * 110.48391 * 93.89928 * 22 21 19 39 39 H 1.08997 * 110.48457 * 216.54082 * 22 21 19 40 40 H 0.97001 * 124.35121 * 180.45650 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5447 0.0005 5 8 4.0808 0.5864 0.0015 6 6 3.9209 2.9373 0.0012 7 6 5.4487 2.8571 0.0010 8 1 5.7807 2.2498 -0.8410 9 6 6.0246 4.2443 -0.1221 10 1 6.6593 4.4931 -0.9598 11 6 5.7410 5.1959 0.8344 12 7 4.9683 4.8929 1.8546 13 14 6.4542 6.9156 0.6813 14 1 5.5191 7.7723 -0.0914 15 1 6.6499 7.4927 2.0355 16 1 7.7604 6.8490 -0.0219 17 8 5.8946 2.2630 1.2219 18 6 7.1177 1.5341 1.1007 19 6 7.4976 0.9456 2.4611 20 1 6.6655 0.3715 2.8687 21 6 8.7492 0.0504 2.3256 22 6 9.4788 0.3228 3.6615 23 6 8.9864 1.6912 4.0801 24 8 9.5134 2.3926 4.9175 25 7 7.8807 2.0165 3.3886 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5140 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 3.5846 3.4691 0.8911 32 1 3.5852 3.4697 -0.8888 33 1 4.7691 5.5623 2.5278 34 1 7.9079 2.2040 0.7617 35 1 6.9902 0.7278 0.3785 36 1 8.4703 -0.9999 2.2405 37 1 9.3601 0.3596 1.4774 38 1 9.2045 -0.4252 4.4054 39 1 10.5583 0.3346 3.5111 40 1 7.3980 2.8519 3.4895 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222580357.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:54 Heat of formation + Delta-G solvation = -199.898148 kcal Electronic energy + Delta-G solvation = -23359.827405 eV Core-core repulsion = 19752.628726 eV Total energy + Delta-G solvation = -3607.198679 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.33396 -41.18055 -38.73100 -37.60391 -37.03506 -34.77471 -32.80808 -32.12301 -31.90434 -29.92538 -27.98047 -25.03885 -24.38551 -23.18686 -22.20213 -21.43145 -21.32506 -18.87819 -18.29543 -18.16764 -17.77923 -17.48242 -17.12084 -16.64853 -16.28131 -16.04862 -15.36951 -15.07957 -14.94826 -14.63182 -14.22751 -14.08882 -13.74250 -13.58059 -13.44986 -13.24384 -12.97511 -12.83801 -12.78878 -12.57058 -12.46341 -12.39879 -12.09413 -11.88843 -11.73288 -11.42868 -11.28712 -11.09460 -10.89905 -10.61772 -10.02914 -9.80754 -8.09337 -6.33255 1.39389 1.42362 1.45340 1.50893 1.60072 1.93551 2.41077 2.50147 3.02039 3.30853 3.60191 3.63607 4.05186 4.05875 4.10636 4.19097 4.27388 4.39282 4.40110 4.54284 4.65901 4.67194 4.81057 4.84799 4.93529 4.96124 4.96669 5.06163 5.17145 5.18260 5.25704 5.49286 5.61621 5.78550 5.84610 6.14197 6.17863 6.60503 6.97458 7.08874 7.24627 7.47077 8.90211 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.010957 B = 0.006300 C = 0.004366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2554.886716 B = 4443.147234 C = 6412.082572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.050 3.950 3 O -0.372 6.372 4 C 0.466 3.534 5 O -0.533 6.533 6 C -0.099 4.099 7 C 0.234 3.766 8 H 0.010 0.990 9 C -0.574 4.574 10 H 0.052 0.948 11 C 0.054 3.946 12 N -0.875 5.875 13 Si 0.939 3.061 14 H -0.269 1.269 15 H -0.290 1.290 16 H -0.277 1.277 17 O -0.382 6.382 18 C 0.066 3.934 19 C 0.135 3.865 20 H 0.083 0.917 21 C -0.113 4.113 22 C -0.139 4.139 23 C 0.500 3.500 24 O -0.601 6.601 25 N -0.717 5.717 26 H 0.069 0.931 27 H 0.103 0.897 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.116 0.884 32 H 0.103 0.897 33 H 0.262 0.738 34 H 0.028 0.972 35 H 0.054 0.946 36 H 0.125 0.875 37 H 0.090 0.910 38 H 0.127 0.873 39 H 0.118 0.882 40 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.606 -12.249 -2.728 12.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.024 4.024 3 O -0.289 6.289 4 C 0.312 3.688 5 O -0.422 6.422 6 C -0.136 4.136 7 C 0.178 3.822 8 H 0.028 0.972 9 C -0.612 4.612 10 H 0.070 0.930 11 C -0.151 4.151 12 N -0.511 5.511 13 Si 0.766 3.234 14 H -0.194 1.194 15 H -0.216 1.216 16 H -0.202 1.202 17 O -0.302 6.302 18 C -0.013 4.013 19 C 0.030 3.970 20 H 0.101 0.899 21 C -0.151 4.151 22 C -0.179 4.179 23 C 0.289 3.711 24 O -0.484 6.484 25 N -0.369 5.369 26 H 0.088 0.912 27 H 0.122 0.878 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.134 0.866 32 H 0.121 0.879 33 H 0.072 0.928 34 H 0.047 0.953 35 H 0.072 0.928 36 H 0.144 0.856 37 H 0.109 0.891 38 H 0.145 0.855 39 H 0.137 0.863 40 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -2.304 -12.251 -2.002 12.625 hybrid contribution 0.160 1.623 -0.181 1.640 sum -2.143 -10.628 -2.183 11.060 Atomic orbital electron populations 1.21810 0.90337 1.04353 1.03517 1.23243 0.97186 0.79795 1.02142 1.86560 1.24706 1.33508 1.84151 1.24511 0.80140 0.93513 0.70682 1.90515 1.60865 1.43918 1.46952 1.21678 0.97099 0.88836 1.06023 1.19234 0.88821 0.91013 0.83170 0.97228 1.21667 1.32728 0.97109 1.09676 0.92963 1.25473 0.94248 1.00961 0.94392 1.69978 1.35383 1.34595 1.11167 0.85871 0.79046 0.81369 0.77135 1.19404 1.21563 1.20198 1.87927 1.38270 1.69130 1.34829 1.22541 0.88360 0.94422 0.95929 1.21871 0.98779 0.87857 0.88450 0.89892 1.22699 0.93550 1.01461 0.97343 1.22372 1.03394 0.92933 0.99167 1.21849 0.79859 0.89957 0.79480 1.90674 1.62118 1.59383 1.36198 1.46625 1.28454 1.20978 1.40804 0.91230 0.87824 0.91740 0.91344 0.92042 0.86600 0.87914 0.92809 0.95339 0.92776 0.85631 0.89107 0.85467 0.86330 0.75863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 10.29 71.98 0.74 -1.92 16 2 C 0.05 1.33 6.19 71.98 0.45 1.78 16 3 O -0.37 -13.15 10.22 -51.43 -0.53 -13.68 16 4 C 0.47 19.10 7.84 71.24 0.56 19.66 16 5 O -0.53 -23.05 15.17 27.05 0.41 -22.64 16 6 C -0.10 -4.39 5.22 29.85 0.16 -4.23 16 7 C 0.23 11.22 1.82 29.85 0.05 11.28 16 8 H 0.01 0.46 7.60 -2.39 -0.02 0.44 16 9 C -0.57 -29.64 8.90 25.60 0.23 -29.42 16 10 H 0.05 2.70 7.81 -2.91 -0.02 2.68 16 11 C 0.05 2.78 5.24 84.65 0.44 3.22 16 12 N -0.88 -46.34 10.93 21.45 0.23 -46.11 16 13 Si 0.94 41.87 29.54 68.60 2.03 43.90 16 14 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 15 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 16 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 17 O -0.38 -18.01 8.61 -135.15 -1.16 -19.17 16 18 C 0.07 2.52 5.30 71.98 0.38 2.90 16 19 C 0.14 4.24 3.79 45.45 0.17 4.42 16 20 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 21 C -0.11 -2.34 6.68 31.65 0.21 -2.13 16 22 C -0.14 -3.04 6.86 30.61 0.21 -2.83 16 23 C 0.50 17.52 8.43 87.92 0.74 18.26 16 24 O -0.60 -26.35 18.03 -3.04 -0.05 -26.40 16 25 N -0.72 -26.42 5.88 -439.37 -2.58 -29.01 16 26 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 27 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 29 H 0.07 1.74 8.13 -2.39 -0.02 1.73 16 30 H 0.06 1.67 8.13 -2.38 -0.02 1.65 16 31 H 0.12 5.72 6.22 -2.39 -0.01 5.71 16 32 H 0.10 4.25 8.14 -2.39 -0.02 4.23 16 33 H 0.26 13.47 8.31 -92.71 -0.77 12.70 16 34 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.05 1.95 8.08 -2.39 -0.02 1.93 16 36 H 0.13 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.09 1.80 7.91 -2.39 -0.02 1.78 16 38 H 0.13 2.17 8.14 -2.39 -0.02 2.15 16 39 H 0.12 2.18 8.14 -2.39 -0.02 2.16 16 40 H 0.40 17.36 8.96 -92.71 -0.83 16.53 16 Total: -1.00 -66.97 340.71 2.90 -64.07 By element: Atomic # 1 Polarization: 27.84 SS G_CDS: 0.21 Total: 28.05 kcal Atomic # 6 Polarization: 16.65 SS G_CDS: 4.34 Total: 20.99 kcal Atomic # 7 Polarization: -72.77 SS G_CDS: -2.35 Total: -75.11 kcal Atomic # 8 Polarization: -80.56 SS G_CDS: -1.33 Total: -81.90 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.90 kcal Total: -66.97 2.90 -64.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222580357.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.826 kcal (2) G-P(sol) polarization free energy of solvation -66.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds