Wall clock time and date at job start Tue Mar 31 2020 06:04:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45203 * 109.47208 * 2 1 4 4 C 1.34221 * 116.99788 * 180.02562 * 3 2 1 5 5 O 1.20822 * 120.00570 * 359.97438 * 4 3 2 6 6 C 1.50701 * 119.99986 * 180.02562 * 4 3 2 7 7 C 1.52996 * 109.47461 * 179.97438 * 6 4 3 8 8 H 1.09006 * 109.46673 * 54.48307 * 7 6 4 9 9 C 1.50701 * 109.47269 * 174.47922 * 7 6 4 10 10 H 1.07996 * 120.00398 * 94.58862 * 9 7 6 11 11 C 1.37886 * 120.00132 * 274.59218 * 9 7 6 12 12 N 1.31510 * 119.99685 * 6.45434 * 11 9 7 13 13 Si 1.86792 * 119.99883 * 186.46165 * 11 9 7 14 14 H 1.48506 * 109.46997 * 180.02562 * 13 11 9 15 15 H 1.48502 * 109.46919 * 299.99380 * 13 11 9 16 16 H 1.48501 * 109.47661 * 59.99688 * 13 11 9 17 17 O 1.42894 * 109.47525 * 294.47928 * 7 6 4 18 18 C 1.42897 * 114.00191 * 149.99580 * 17 7 6 19 19 C 1.52999 * 109.47307 * 180.02562 * 18 17 7 20 20 H 1.09006 * 110.21171 * 305.69980 * 19 18 17 21 21 C 1.54484 * 110.25041 * 183.77389 * 19 18 17 22 22 C 1.54622 * 101.76791 * 215.58315 * 21 19 18 23 23 C 1.51286 * 104.19495 * 24.79308 * 22 21 19 24 24 O 1.21280 * 124.93783 * 163.73173 * 23 22 21 25 25 N 1.34557 * 110.13876 * 343.67928 * 23 22 21 26 26 H 1.08994 * 109.47314 * 59.99343 * 1 2 3 27 27 H 1.09000 * 109.47245 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46872 * 299.99702 * 1 2 3 29 29 H 1.08999 * 109.46872 * 240.00298 * 2 1 3 30 30 H 1.09000 * 109.46938 * 120.00522 * 2 1 3 31 31 H 1.09001 * 109.47159 * 59.99909 * 6 4 3 32 32 H 1.08995 * 109.47433 * 300.00373 * 6 4 3 33 33 H 0.96999 * 120.00557 * 355.08767 * 12 11 9 34 34 H 1.09006 * 109.47492 * 300.00319 * 18 17 7 35 35 H 1.08997 * 109.47231 * 60.00330 * 18 17 7 36 36 H 1.08997 * 110.96188 * 333.70282 * 21 19 18 37 37 H 1.09000 * 110.97342 * 97.45727 * 21 19 18 38 38 H 1.08999 * 110.48985 * 143.47128 * 22 21 19 39 39 H 1.09001 * 110.48677 * 265.98631 * 22 21 19 40 40 H 0.97002 * 124.43340 * 179.64546 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9373 0.0000 7 6 5.4486 2.8573 -0.0001 8 1 5.7801 2.2424 -0.8369 9 6 6.0243 4.2433 -0.1363 10 1 6.3045 4.8007 0.7453 11 6 6.1932 4.8000 -1.3864 12 7 5.7368 4.1769 -2.4507 13 14 7.0706 6.4390 -1.5681 14 1 7.1210 6.8170 -3.0034 15 1 6.3350 7.4812 -0.8079 16 1 8.4527 6.3222 -1.0376 17 8 5.8952 2.2744 1.2257 18 6 7.1183 1.5444 1.1105 19 6 7.4983 0.9673 2.4756 20 1 7.5307 1.7596 3.2236 21 6 8.8662 0.2542 2.3926 22 6 8.6635 -0.9309 3.3649 23 6 7.1660 -1.1454 3.3813 24 8 6.6117 -2.1426 3.7926 25 7 6.5382 -0.0686 2.8742 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 3.5852 3.4690 0.8905 32 1 3.5844 3.4701 -0.8894 33 1 5.3451 3.2936 -2.3650 34 1 6.9904 0.7315 0.3956 35 1 7.9082 2.2112 0.7650 36 1 9.0603 -0.1004 1.3804 37 1 9.6683 0.9076 2.7359 38 1 9.1722 -1.8204 2.9935 39 1 9.0249 -0.6736 4.3605 40 1 5.5759 0.0127 2.7828 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222580358.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:58 Heat of formation + Delta-G solvation = -189.267468 kcal Electronic energy + Delta-G solvation = -23290.196248 eV Core-core repulsion = 19683.458550 eV Total energy + Delta-G solvation = -3606.737698 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.12001 -39.88785 -37.42187 -36.33213 -35.70067 -33.38391 -31.68577 -31.14826 -30.42824 -28.72794 -25.71409 -23.87219 -23.21374 -21.83755 -21.14219 -20.30432 -19.99605 -17.66986 -17.03867 -16.81671 -16.46229 -16.29185 -15.68900 -15.48099 -14.76999 -14.28431 -13.94447 -13.87991 -13.63099 -13.48761 -13.20380 -12.85778 -12.57650 -12.54234 -12.33291 -11.99582 -11.87995 -11.43235 -11.39106 -11.29054 -11.04126 -10.97699 -10.80673 -10.25893 -10.23666 -9.91720 -9.85663 -9.71790 -9.54293 -8.83917 -8.63198 -8.18591 -6.61655 -4.39752 2.75311 2.85901 3.16785 3.32972 3.34640 3.52971 3.61465 4.23532 4.36197 4.53883 4.60661 5.00463 5.02206 5.06214 5.11166 5.22534 5.30840 5.38881 5.50676 5.55257 5.69315 5.78061 5.82849 5.83785 5.96408 6.00560 6.19075 6.19448 6.23015 6.31223 6.63325 6.86198 7.02408 7.08348 7.29179 7.78697 7.96769 8.36942 8.44119 8.46060 8.57195 9.36463 10.73745 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.009451 B = 0.006824 C = 0.004119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2962.039076 B = 4101.956138 C = 6795.454480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.059 3.941 3 O -0.368 6.368 4 C 0.458 3.542 5 O -0.509 6.509 6 C -0.103 4.103 7 C 0.219 3.781 8 H 0.030 0.970 9 C -0.617 4.617 10 H 0.062 0.938 11 C 0.025 3.975 12 N -0.900 5.900 13 Si 1.071 2.929 14 H -0.281 1.281 15 H -0.285 1.285 16 H -0.285 1.285 17 O -0.392 6.392 18 C 0.071 3.929 19 C 0.132 3.868 20 H 0.087 0.913 21 C -0.127 4.127 22 C -0.154 4.154 23 C 0.514 3.486 24 O -0.550 6.550 25 N -0.712 5.712 26 H 0.065 0.935 27 H 0.074 0.926 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.097 0.903 32 H 0.109 0.891 33 H 0.269 0.731 34 H 0.045 0.955 35 H 0.061 0.939 36 H 0.085 0.915 37 H 0.093 0.907 38 H 0.099 0.901 39 H 0.102 0.898 40 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.088 -4.981 6.259 8.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.015 4.015 3 O -0.286 6.286 4 C 0.302 3.698 5 O -0.396 6.396 6 C -0.141 4.141 7 C 0.162 3.838 8 H 0.048 0.952 9 C -0.655 4.655 10 H 0.081 0.919 11 C -0.180 4.180 12 N -0.536 5.536 13 Si 0.898 3.102 14 H -0.207 1.207 15 H -0.211 1.211 16 H -0.212 1.212 17 O -0.312 6.312 18 C -0.007 4.007 19 C 0.027 3.973 20 H 0.105 0.895 21 C -0.165 4.165 22 C -0.195 4.195 23 C 0.300 3.700 24 O -0.429 6.429 25 N -0.366 5.366 26 H 0.084 0.916 27 H 0.093 0.907 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.115 0.885 32 H 0.127 0.873 33 H 0.081 0.919 34 H 0.063 0.937 35 H 0.079 0.921 36 H 0.103 0.897 37 H 0.111 0.889 38 H 0.117 0.883 39 H 0.120 0.880 40 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 0.451 -4.649 5.536 7.243 hybrid contribution -0.822 -1.212 0.729 1.636 sum -0.371 -5.861 6.265 8.587 Atomic orbital electron populations 1.21780 0.93187 1.02452 1.03324 1.22880 0.94958 0.81553 1.02124 1.86579 1.26092 1.31263 1.84637 1.24770 0.79557 0.94146 0.71375 1.90583 1.60217 1.43407 1.45419 1.22121 0.98454 0.88413 1.05085 1.19610 0.87270 0.93759 0.83167 0.95239 1.22356 1.46082 1.01420 0.95600 0.91944 1.25971 0.95201 1.04960 0.91903 1.70855 1.36424 1.14574 1.31705 0.83504 0.76131 0.74274 0.76283 1.20653 1.21133 1.21162 1.87616 1.38594 1.69796 1.35196 1.22465 0.89228 0.94817 0.94161 1.21802 0.87965 0.90033 0.97499 0.89488 1.22632 0.96501 0.96671 1.00688 1.22321 0.94446 1.00649 1.02051 1.20938 0.90424 0.82279 0.76328 1.90715 1.73025 1.30161 1.48986 1.46368 1.10347 1.17216 1.62717 0.91610 0.90724 0.91665 0.91750 0.91722 0.88468 0.87347 0.91933 0.93731 0.92058 0.89674 0.88855 0.88252 0.87958 0.74574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 10.29 37.16 0.38 -1.26 16 2 C 0.06 0.86 6.19 37.16 0.23 1.09 16 3 O -0.37 -6.63 10.22 -39.23 -0.40 -7.03 16 4 C 0.46 9.39 7.84 36.01 0.28 9.68 16 5 O -0.51 -11.32 15.18 -23.92 -0.36 -11.69 16 6 C -0.10 -2.21 5.38 -27.88 -0.15 -2.36 16 7 C 0.22 5.18 1.27 -27.88 -0.04 5.14 16 8 H 0.03 0.78 6.40 -51.93 -0.33 0.44 16 9 C -0.62 -15.79 8.64 -34.44 -0.30 -16.09 16 10 H 0.06 1.62 7.82 -52.49 -0.41 1.21 16 11 C 0.03 0.66 5.45 -17.82 -0.10 0.56 16 12 N -0.90 -24.92 13.63 55.43 0.76 -24.17 16 13 Si 1.07 23.08 29.91 -169.99 -5.08 17.99 16 14 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 15 H -0.29 -5.89 7.11 56.52 0.40 -5.49 16 16 H -0.29 -5.87 7.11 56.52 0.40 -5.47 16 17 O -0.39 -8.49 9.23 -49.14 -0.45 -8.94 16 18 C 0.07 1.31 5.31 37.16 0.20 1.51 16 19 C 0.13 1.92 3.79 -67.01 -0.25 1.66 16 20 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 21 C -0.13 -1.39 6.69 -25.10 -0.17 -1.55 16 22 C -0.15 -1.73 6.86 -26.74 -0.18 -1.91 16 23 C 0.51 8.20 8.43 -10.80 -0.09 8.11 16 24 O -0.55 -10.86 18.03 5.56 0.10 -10.76 16 25 N -0.71 -11.38 5.88 -52.73 -0.31 -11.69 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.95 8.13 -51.93 -0.42 0.52 16 30 H 0.06 0.94 8.13 -51.93 -0.42 0.52 16 31 H 0.10 1.98 8.14 -51.93 -0.42 1.55 16 32 H 0.11 2.41 7.84 -51.93 -0.41 2.00 16 33 H 0.27 7.47 6.40 -40.82 -0.26 7.21 16 34 H 0.04 0.87 8.09 -51.93 -0.42 0.45 16 35 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 36 H 0.08 0.93 7.91 -51.93 -0.41 0.51 16 37 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.41 7.21 8.96 -40.82 -0.37 6.84 16 LS Contribution 342.49 15.07 5.16 5.16 Total: -1.00 -31.40 342.49 -6.83 -38.24 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -6.05 Total: 8.29 kcal Atomic # 6 Polarization: 4.78 SS G_CDS: -0.18 Total: 4.59 kcal Atomic # 7 Polarization: -36.30 SS G_CDS: 0.45 Total: -35.86 kcal Atomic # 8 Polarization: -37.30 SS G_CDS: -1.12 Total: -38.42 kcal Atomic # 14 Polarization: 23.08 SS G_CDS: -5.08 Total: 17.99 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.40 -6.83 -38.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222580358.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.031 kcal (2) G-P(sol) polarization free energy of solvation -31.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds