Wall clock time and date at job start Tue Mar 31 2020 06:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45203 * 109.47208 * 2 1 4 4 C 1.34221 * 116.99788 * 180.02562 * 3 2 1 5 5 O 1.20822 * 120.00570 * 359.97438 * 4 3 2 6 6 C 1.50701 * 119.99986 * 180.02562 * 4 3 2 7 7 C 1.52996 * 109.47461 * 179.97438 * 6 4 3 8 8 H 1.09006 * 109.46673 * 54.48307 * 7 6 4 9 9 C 1.50701 * 109.47269 * 174.47922 * 7 6 4 10 10 H 1.07996 * 120.00398 * 94.58862 * 9 7 6 11 11 C 1.37886 * 120.00132 * 274.59218 * 9 7 6 12 12 N 1.31510 * 119.99685 * 6.45434 * 11 9 7 13 13 Si 1.86792 * 119.99883 * 186.46165 * 11 9 7 14 14 H 1.48506 * 109.46997 * 180.02562 * 13 11 9 15 15 H 1.48502 * 109.46919 * 299.99380 * 13 11 9 16 16 H 1.48501 * 109.47661 * 59.99688 * 13 11 9 17 17 O 1.42894 * 109.47525 * 294.47928 * 7 6 4 18 18 C 1.42897 * 114.00191 * 149.99580 * 17 7 6 19 19 C 1.52999 * 109.47307 * 180.02562 * 18 17 7 20 20 H 1.09006 * 110.21171 * 305.69980 * 19 18 17 21 21 C 1.54484 * 110.25041 * 183.77389 * 19 18 17 22 22 C 1.54622 * 101.76791 * 215.58315 * 21 19 18 23 23 C 1.51286 * 104.19495 * 24.79308 * 22 21 19 24 24 O 1.21280 * 124.93783 * 163.73173 * 23 22 21 25 25 N 1.34557 * 110.13876 * 343.67928 * 23 22 21 26 26 H 1.08994 * 109.47314 * 59.99343 * 1 2 3 27 27 H 1.09000 * 109.47245 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46872 * 299.99702 * 1 2 3 29 29 H 1.08999 * 109.46872 * 240.00298 * 2 1 3 30 30 H 1.09000 * 109.46938 * 120.00522 * 2 1 3 31 31 H 1.09001 * 109.47159 * 59.99909 * 6 4 3 32 32 H 1.08995 * 109.47433 * 300.00373 * 6 4 3 33 33 H 0.96999 * 120.00557 * 355.08767 * 12 11 9 34 34 H 1.09006 * 109.47492 * 300.00319 * 18 17 7 35 35 H 1.08997 * 109.47231 * 60.00330 * 18 17 7 36 36 H 1.08997 * 110.96188 * 333.70282 * 21 19 18 37 37 H 1.09000 * 110.97342 * 97.45727 * 21 19 18 38 38 H 1.08999 * 110.48985 * 143.47128 * 22 21 19 39 39 H 1.09001 * 110.48677 * 265.98631 * 22 21 19 40 40 H 0.97002 * 124.43340 * 179.64546 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9373 0.0000 7 6 5.4486 2.8573 -0.0001 8 1 5.7801 2.2424 -0.8369 9 6 6.0243 4.2433 -0.1363 10 1 6.3045 4.8007 0.7453 11 6 6.1932 4.8000 -1.3864 12 7 5.7368 4.1769 -2.4507 13 14 7.0706 6.4390 -1.5681 14 1 7.1210 6.8170 -3.0034 15 1 6.3350 7.4812 -0.8079 16 1 8.4527 6.3222 -1.0376 17 8 5.8952 2.2744 1.2257 18 6 7.1183 1.5444 1.1105 19 6 7.4983 0.9673 2.4756 20 1 7.5307 1.7596 3.2236 21 6 8.8662 0.2542 2.3926 22 6 8.6635 -0.9309 3.3649 23 6 7.1660 -1.1454 3.3813 24 8 6.6117 -2.1426 3.7926 25 7 6.5382 -0.0686 2.8742 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 3.5852 3.4690 0.8905 32 1 3.5844 3.4701 -0.8894 33 1 5.3451 3.2936 -2.3650 34 1 6.9904 0.7315 0.3956 35 1 7.9082 2.2112 0.7650 36 1 9.0603 -0.1004 1.3804 37 1 9.6683 0.9076 2.7359 38 1 9.1722 -1.8204 2.9935 39 1 9.0249 -0.6736 4.3605 40 1 5.5759 0.0127 2.7828 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222580358.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:57 Heat of formation + Delta-G solvation = -210.330399 kcal Electronic energy + Delta-G solvation = -23291.109605 eV Core-core repulsion = 19683.458550 eV Total energy + Delta-G solvation = -3607.651055 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.56164 -41.28659 -39.05450 -37.76862 -37.25236 -35.27271 -32.98329 -32.21363 -32.02102 -30.11099 -27.61300 -25.21144 -24.57223 -23.41385 -22.32003 -21.68434 -21.44167 -19.48250 -18.53369 -18.29744 -17.95796 -17.59554 -17.25788 -17.12433 -16.08653 -15.83476 -15.61120 -15.29164 -15.10487 -14.87688 -14.41969 -14.09313 -13.97674 -13.73403 -13.57197 -13.34344 -13.29230 -13.07970 -12.83129 -12.63234 -12.55641 -12.21109 -11.97757 -11.94703 -11.74572 -11.58805 -11.57437 -11.33614 -10.97928 -10.59776 -10.16144 -10.03217 -8.68925 -6.48494 1.18207 1.52129 1.58894 1.61653 1.73498 1.85050 2.37457 2.55122 2.86069 3.12140 3.45410 3.54525 3.82039 3.91933 3.97419 4.04357 4.15280 4.23270 4.26209 4.33894 4.36224 4.48900 4.63726 4.70851 4.79950 4.82086 4.85053 4.86280 5.04224 5.05642 5.16269 5.18059 5.41862 5.74244 5.82127 5.97922 6.05937 6.45269 6.58777 6.75475 7.15915 7.36652 8.65958 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.009451 B = 0.006824 C = 0.004119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2962.039076 B = 4101.956138 C = 6795.454480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.049 3.951 3 O -0.366 6.366 4 C 0.464 3.536 5 O -0.531 6.531 6 C -0.098 4.098 7 C 0.224 3.776 8 H -0.003 1.003 9 C -0.623 4.623 10 H 0.059 0.941 11 C -0.017 4.017 12 N -0.925 5.925 13 Si 1.115 2.885 14 H -0.287 1.287 15 H -0.269 1.269 16 H -0.268 1.268 17 O -0.398 6.398 18 C 0.069 3.931 19 C 0.136 3.864 20 H 0.100 0.900 21 C -0.116 4.116 22 C -0.140 4.140 23 C 0.504 3.496 24 O -0.596 6.596 25 N -0.719 5.719 26 H 0.068 0.932 27 H 0.103 0.897 28 H 0.070 0.930 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.109 0.891 32 H 0.098 0.902 33 H 0.256 0.744 34 H 0.024 0.976 35 H 0.060 0.940 36 H 0.084 0.916 37 H 0.130 0.870 38 H 0.117 0.883 39 H 0.132 0.868 40 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.985 -4.526 7.421 8.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.024 4.024 3 O -0.284 6.284 4 C 0.308 3.692 5 O -0.420 6.420 6 C -0.136 4.136 7 C 0.167 3.833 8 H 0.015 0.985 9 C -0.660 4.660 10 H 0.077 0.923 11 C -0.217 4.217 12 N -0.562 5.562 13 Si 0.936 3.064 14 H -0.213 1.213 15 H -0.194 1.194 16 H -0.193 1.193 17 O -0.318 6.318 18 C -0.008 4.008 19 C 0.031 3.969 20 H 0.117 0.883 21 C -0.153 4.153 22 C -0.179 4.179 23 C 0.292 3.708 24 O -0.478 6.478 25 N -0.371 5.371 26 H 0.087 0.913 27 H 0.121 0.879 28 H 0.089 0.911 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.127 0.873 32 H 0.116 0.884 33 H 0.067 0.933 34 H 0.043 0.957 35 H 0.078 0.922 36 H 0.103 0.897 37 H 0.148 0.852 38 H 0.135 0.865 39 H 0.150 0.850 40 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 1.346 -4.191 6.715 8.029 hybrid contribution -1.181 -1.429 0.381 1.893 sum 0.165 -5.620 7.096 9.053 Atomic orbital electron populations 1.21809 0.89810 1.04478 1.03787 1.23277 0.97559 0.79583 1.01991 1.86549 1.24270 1.33602 1.83970 1.24406 0.80416 0.93350 0.70994 1.90572 1.60991 1.43902 1.46542 1.21867 0.97335 0.89335 1.05089 1.19389 0.88508 0.92563 0.82856 0.98513 1.22567 1.45964 1.01997 0.95493 0.92269 1.27292 0.95102 1.07682 0.91650 1.70970 1.38201 1.14452 1.32548 0.82947 0.76191 0.71084 0.76140 1.21264 1.19372 1.19278 1.87596 1.40167 1.70045 1.33998 1.22632 0.87831 0.93866 0.96490 1.21923 0.89525 0.90311 0.95126 0.88251 1.22712 0.94962 0.96670 1.01000 1.22367 0.90349 1.01413 1.03813 1.21821 0.92617 0.81225 0.75107 1.90683 1.74436 1.31714 1.50953 1.46574 1.10106 1.17901 1.62534 0.91250 0.87872 0.91082 0.92037 0.91830 0.87289 0.88406 0.93321 0.95727 0.92215 0.89704 0.85207 0.86522 0.85003 0.76041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 10.29 71.98 0.74 -2.08 16 2 C 0.05 1.42 6.19 71.98 0.45 1.87 16 3 O -0.37 -13.25 10.22 -51.33 -0.52 -13.77 16 4 C 0.46 19.51 7.84 71.24 0.56 20.07 16 5 O -0.53 -24.42 15.18 26.93 0.41 -24.02 16 6 C -0.10 -4.34 5.38 29.85 0.16 -4.17 16 7 C 0.22 10.92 1.27 29.85 0.04 10.96 16 8 H 0.00 -0.16 6.40 -2.38 -0.02 -0.18 16 9 C -0.62 -32.17 8.64 25.60 0.22 -31.95 16 10 H 0.06 3.05 7.82 -2.91 -0.02 3.03 16 11 C -0.02 -0.91 5.45 84.66 0.46 -0.45 16 12 N -0.93 -52.38 13.63 21.45 0.29 -52.08 16 13 Si 1.12 45.82 29.91 68.60 2.05 47.87 16 14 H -0.29 -12.01 7.11 99.48 0.71 -11.30 16 15 H -0.27 -10.27 7.11 99.48 0.71 -9.56 16 16 H -0.27 -10.16 7.11 99.48 0.71 -9.46 16 17 O -0.40 -17.55 9.23 -135.68 -1.25 -18.80 16 18 C 0.07 2.57 5.31 71.98 0.38 2.96 16 19 C 0.14 3.76 3.79 45.45 0.17 3.93 16 20 H 0.10 2.55 8.14 -2.38 -0.02 2.53 16 21 C -0.12 -2.17 6.69 31.65 0.21 -1.96 16 22 C -0.14 -2.69 6.86 30.59 0.21 -2.48 16 23 C 0.50 15.65 8.43 87.88 0.74 16.39 16 24 O -0.60 -23.62 18.03 -3.03 -0.05 -23.67 16 25 N -0.72 -22.86 5.88 -439.24 -2.58 -25.44 16 26 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.06 1.80 8.13 -2.39 -0.02 1.78 16 30 H 0.06 1.85 8.13 -2.39 -0.02 1.83 16 31 H 0.11 4.48 8.14 -2.39 -0.02 4.46 16 32 H 0.10 4.51 7.84 -2.39 -0.02 4.49 16 33 H 0.26 14.83 6.40 -92.71 -0.59 14.24 16 34 H 0.02 1.00 8.09 -2.38 -0.02 0.98 16 35 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 36 H 0.08 1.64 7.91 -2.39 -0.02 1.62 16 37 H 0.13 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.12 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.13 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.40 14.38 8.96 -92.71 -0.83 13.55 16 Total: -1.00 -70.28 342.49 3.07 -67.21 By element: Atomic # 1 Polarization: 29.24 SS G_CDS: 0.39 Total: 29.63 kcal Atomic # 6 Polarization: 8.74 SS G_CDS: 4.34 Total: 13.08 kcal Atomic # 7 Polarization: -75.24 SS G_CDS: -2.29 Total: -77.53 kcal Atomic # 8 Polarization: -78.84 SS G_CDS: -1.42 Total: -80.26 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.05 Total: 47.87 kcal Total: -70.28 3.07 -67.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222580358.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.120 kcal (2) G-P(sol) polarization free energy of solvation -70.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -213.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -210.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds