Wall clock time and date at job start Tue Mar 31 2020 05:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29029 * 124.91428 * 2 1 4 4 C 1.31777 * 117.12746 * 179.97438 * 3 2 1 5 5 C 1.33644 * 114.50079 * 0.02562 * 4 3 2 6 6 C 1.50691 * 126.03957 * 179.97438 * 5 4 3 7 7 O 1.42896 * 109.47414 * 89.99671 * 6 5 4 8 8 C 1.42905 * 114.00079 * 180.02562 * 7 6 5 9 9 H 1.09000 * 109.46889 * 29.99979 * 8 7 6 10 10 C 1.50698 * 109.46929 * 269.99435 * 8 7 6 11 11 H 1.08000 * 119.99544 * 120.00347 * 10 8 7 12 12 C 1.37868 * 120.00366 * 300.00129 * 10 8 7 13 13 N 1.31518 * 120.00116 * 0.02562 * 12 10 8 14 14 Si 1.86800 * 120.00209 * 180.02562 * 12 10 8 15 15 H 1.48503 * 109.46851 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47518 * 119.99884 * 14 12 10 17 17 H 1.48505 * 109.47161 * 240.00349 * 14 12 10 18 18 C 1.53002 * 109.46866 * 149.99838 * 8 7 6 19 19 N 1.46906 * 109.47088 * 293.29171 * 18 8 7 20 20 C 1.46893 * 109.47116 * 64.50278 * 19 18 8 21 21 C 1.46905 * 109.46821 * 184.50278 * 19 18 8 22 22 C 1.46896 * 109.47045 * 304.50127 * 19 18 8 23 23 S 1.70978 * 124.91907 * 180.31299 * 2 1 3 24 24 H 1.08997 * 109.47185 * 89.98256 * 1 2 3 25 25 H 1.09006 * 109.46841 * 209.97198 * 1 2 3 26 26 H 1.08990 * 109.47451 * 329.97404 * 1 2 3 27 27 H 1.07997 * 122.75228 * 179.97438 * 4 3 2 28 28 H 1.08999 * 109.47161 * 329.99133 * 6 5 4 29 29 H 1.09001 * 109.47076 * 209.99354 * 6 5 4 30 30 H 0.96995 * 119.99952 * 180.02562 * 13 12 10 31 31 H 1.08997 * 109.47352 * 53.29611 * 18 8 7 32 32 H 1.08997 * 109.46957 * 173.29412 * 18 8 7 33 33 H 1.09008 * 109.46811 * 50.74524 * 20 19 18 34 34 H 1.09001 * 109.47374 * 170.74516 * 20 19 18 35 35 H 1.08997 * 109.47355 * 290.75226 * 20 19 18 36 36 H 1.09000 * 109.47046 * 60.00469 * 21 19 18 37 37 H 1.08999 * 109.46718 * 179.97438 * 21 19 18 38 38 H 1.09002 * 109.47070 * 300.00233 * 21 19 18 39 39 H 1.09004 * 109.46969 * 60.00083 * 22 19 18 40 40 H 1.09000 * 109.47006 * 179.97438 * 22 19 18 41 41 H 1.09000 * 109.47705 * 300.00071 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0581 0.0000 4 6 3.5511 0.8795 0.0005 5 6 3.9355 -0.4005 0.0004 6 6 5.3575 -0.8992 0.0004 7 8 5.8070 -1.0568 1.3476 8 6 7.1516 -1.5277 1.4604 9 1 7.7295 -1.1856 0.6019 10 6 7.1545 -3.0342 1.4999 11 1 7.6823 -3.5932 0.7414 12 6 6.4835 -3.6988 2.5044 13 7 5.8404 -3.0180 3.4278 14 14 6.4877 -5.5661 2.5538 15 1 7.2771 -6.0897 1.4100 16 1 7.0963 -6.0263 3.8278 17 1 5.0927 -6.0669 2.4623 18 6 7.7767 -0.9826 2.7461 19 7 7.9209 0.4756 2.6405 20 6 6.5915 1.0938 2.5500 21 6 8.6185 0.9859 3.8283 22 6 8.6970 0.8050 1.4375 23 16 2.4857 -1.4019 -0.0077 24 1 -0.3633 0.0003 -1.0276 25 1 -0.3633 -0.8903 0.5134 26 1 -0.3634 0.8896 0.5142 27 1 4.2531 1.7002 0.0002 28 1 5.9948 -0.1796 -0.5135 29 1 5.4058 -1.8593 -0.5134 30 1 5.3686 -3.4856 4.1346 31 1 7.1344 -1.2238 3.5930 32 1 8.7574 -1.4349 2.8934 33 1 5.9608 0.7188 3.3563 34 1 6.6873 2.1761 2.6371 35 1 6.1396 0.8451 1.5898 36 1 9.6050 0.5272 3.8953 37 1 8.7259 2.0677 3.7497 38 1 8.0427 0.7414 4.7209 39 1 8.1793 0.4262 0.5562 40 1 8.8036 1.8869 1.3589 41 1 9.6835 0.3462 1.5045 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223539475.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:25 Heat of formation + Delta-G solvation = 104.118290 kcal Electronic energy + Delta-G solvation = -21732.230497 eV Core-core repulsion = 18665.030754 eV Total energy + Delta-G solvation = -3067.199743 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.138 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.25046 -40.49091 -38.42014 -34.74333 -33.30206 -31.58800 -30.43452 -30.20237 -29.94048 -27.66626 -26.06350 -24.87789 -24.18984 -22.59953 -20.26060 -19.05975 -18.85160 -18.59942 -18.20737 -17.93987 -16.94403 -16.16399 -15.96143 -15.69218 -15.57619 -15.10171 -14.79360 -14.71519 -14.32745 -14.10884 -14.05620 -13.94008 -13.72819 -13.58883 -13.49026 -13.40967 -13.19755 -12.74452 -12.42827 -12.30280 -12.14409 -11.93742 -11.28919 -11.11666 -10.39804 -10.15509 -10.03099 -9.83019 -9.58517 -7.69886 -5.90544 -0.13893 0.36276 0.56378 1.02702 1.96397 2.11771 2.27013 2.29565 2.34154 2.37350 2.41778 3.03022 3.11801 3.16433 3.23067 3.36326 3.43935 3.56589 3.68401 3.71674 3.74574 3.78084 3.87252 4.12919 4.19820 4.21117 4.22321 4.31719 4.39625 4.52363 4.57948 4.60651 4.74548 4.96796 5.04203 5.25057 5.35809 6.23061 6.30074 6.64835 6.91838 7.25884 7.93422 9.32851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.035 3.965 3 N -0.480 5.480 4 C 0.042 3.958 5 C -0.218 4.218 6 C 0.143 3.857 7 O -0.368 6.368 8 C 0.199 3.801 9 H 0.033 0.967 10 C -0.568 4.568 11 H 0.073 0.927 12 C 0.093 3.907 13 N -0.859 5.859 14 Si 0.897 3.103 15 H -0.267 1.267 16 H -0.276 1.276 17 H -0.275 1.275 18 C -0.002 4.002 19 N -0.271 5.271 20 C -0.038 4.038 21 C -0.040 4.040 22 C -0.046 4.046 23 S 0.164 5.836 24 H 0.086 0.914 25 H 0.081 0.919 26 H 0.088 0.912 27 H 0.168 0.832 28 H 0.051 0.949 29 H 0.067 0.933 30 H 0.275 0.725 31 H 0.156 0.844 32 H 0.117 0.883 33 H 0.118 0.882 34 H 0.095 0.905 35 H 0.132 0.868 36 H 0.112 0.888 37 H 0.108 0.892 38 H 0.115 0.885 39 H 0.118 0.882 40 H 0.108 0.892 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.899 12.669 0.234 14.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.242 4.242 3 N -0.195 5.195 4 C -0.111 4.111 5 C -0.340 4.340 6 C 0.064 3.936 7 O -0.288 6.288 8 C 0.143 3.857 9 H 0.051 0.949 10 C -0.605 4.605 11 H 0.091 0.909 12 C -0.117 4.117 13 N -0.493 5.493 14 Si 0.723 3.277 15 H -0.192 1.192 16 H -0.201 1.201 17 H -0.200 1.200 18 C -0.121 4.121 19 N 0.070 4.930 20 C -0.179 4.179 21 C -0.182 4.182 22 C -0.188 4.188 23 S 0.420 5.580 24 H 0.104 0.896 25 H 0.100 0.900 26 H 0.107 0.893 27 H 0.185 0.815 28 H 0.069 0.931 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.174 0.826 32 H 0.135 0.865 33 H 0.137 0.863 34 H 0.114 0.886 35 H 0.150 0.850 36 H 0.131 0.869 37 H 0.126 0.874 38 H 0.134 0.866 39 H 0.136 0.864 40 H 0.127 0.873 41 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 6.167 12.125 0.566 13.615 hybrid contribution 0.699 -0.390 0.011 0.801 sum 6.866 11.734 0.578 13.608 Atomic orbital electron populations 1.20452 0.85253 1.04326 1.03925 1.27099 1.01976 0.91712 1.03397 1.66281 1.04739 1.31887 1.16631 1.21538 0.91242 0.95336 1.02991 1.25741 0.99781 0.96144 1.12328 1.20335 0.86901 0.99571 0.86824 1.88145 1.31981 1.85887 1.22818 1.19971 0.81026 0.95403 0.89336 0.94916 1.21277 1.36463 0.89183 1.13544 0.90861 1.24987 0.92468 0.99897 0.94329 1.69651 1.29739 1.36673 1.13189 0.86409 0.79120 0.83262 0.78938 1.19155 1.20142 1.19973 1.24934 1.06441 0.71469 1.09217 1.46390 1.14671 1.18384 1.13524 1.24291 0.82542 0.99730 1.11373 1.23990 1.01527 1.03641 0.89071 1.24042 0.99879 1.05679 0.89164 1.84346 0.96722 1.11072 1.65894 0.89565 0.90010 0.89296 0.81503 0.93092 0.91520 0.91463 0.82621 0.86535 0.86295 0.88630 0.84973 0.86944 0.87356 0.86599 0.86381 0.87335 0.86737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.01 10.46 36.01 0.38 0.37 16 2 C 0.03 0.10 7.39 -13.46 -0.10 0.00 16 3 N -0.48 -1.81 10.54 -11.86 -0.13 -1.93 16 4 C 0.04 0.07 11.25 -19.18 -0.22 -0.15 16 5 C -0.22 -0.47 6.23 -35.92 -0.22 -0.69 16 6 C 0.14 0.14 5.59 36.00 0.20 0.34 16 7 O -0.37 -0.62 6.44 -35.23 -0.23 -0.85 16 8 C 0.20 0.14 1.85 -27.88 -0.05 0.09 16 9 H 0.03 -0.06 5.49 -51.93 -0.28 -0.34 16 10 C -0.57 -3.87 8.89 -34.44 -0.31 -4.17 16 11 H 0.07 0.60 7.81 -52.49 -0.41 0.19 16 12 C 0.09 0.82 5.24 -17.82 -0.09 0.73 16 13 N -0.86 -7.62 10.95 55.43 0.61 -7.01 16 14 Si 0.90 8.19 29.54 -169.99 -5.02 3.17 16 15 H -0.27 -2.59 7.11 56.52 0.40 -2.18 16 16 H -0.28 -2.67 7.11 56.52 0.40 -2.27 16 17 H -0.27 -2.90 7.11 56.52 0.40 -2.49 16 18 C 0.00 0.01 3.53 -3.82 -0.01 -0.01 16 19 N -0.27 2.56 0.05 -395.62 -0.02 2.54 16 20 C -0.04 0.31 7.17 60.06 0.43 0.74 16 21 C -0.04 0.48 8.00 60.07 0.48 0.96 16 22 C -0.05 0.51 7.54 60.06 0.45 0.96 16 23 S 0.16 0.53 23.18 -107.50 -2.49 -1.96 16 24 H 0.09 -0.09 8.14 -51.93 -0.42 -0.51 16 25 H 0.08 -0.09 8.14 -51.93 -0.42 -0.51 16 26 H 0.09 -0.02 8.14 -51.93 -0.42 -0.44 16 27 H 0.17 -0.30 8.06 -52.49 -0.42 -0.72 16 28 H 0.05 -0.13 8.08 -51.93 -0.42 -0.55 16 29 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.28 2.65 8.31 -40.82 -0.34 2.31 16 31 H 0.16 -0.03 6.12 -51.93 -0.32 -0.35 16 32 H 0.12 -0.50 8.09 -51.93 -0.42 -0.92 16 33 H 0.12 -0.70 7.94 -51.92 -0.41 -1.11 16 34 H 0.10 -1.06 8.01 -51.93 -0.42 -1.48 16 35 H 0.13 -0.83 5.04 -51.93 -0.26 -1.09 16 36 H 0.11 -1.41 8.12 -51.93 -0.42 -1.83 16 37 H 0.11 -1.49 8.07 -51.93 -0.42 -1.91 16 38 H 0.12 -1.28 8.14 -51.93 -0.42 -1.70 16 39 H 0.12 -1.15 5.86 -51.93 -0.30 -1.46 16 40 H 0.11 -1.46 8.14 -51.93 -0.42 -1.88 16 41 H 0.11 -1.36 8.14 -51.93 -0.42 -1.79 16 LS Contribution 337.14 15.07 5.08 5.08 Total: 0.00 -17.17 337.14 -7.86 -25.04 By element: Atomic # 1 Polarization: -16.65 SS G_CDS: -6.60 Total: -23.25 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: 0.94 Total: -0.82 kcal Atomic # 7 Polarization: -6.87 SS G_CDS: 0.46 Total: -6.40 kcal Atomic # 8 Polarization: -0.62 SS G_CDS: -0.23 Total: -0.85 kcal Atomic # 14 Polarization: 8.19 SS G_CDS: -5.02 Total: 3.17 kcal Atomic # 16 Polarization: 0.53 SS G_CDS: -2.49 Total: -1.96 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -17.17 -7.86 -25.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223539475.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.154 kcal (2) G-P(sol) polarization free energy of solvation -17.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds