Wall clock time and date at job start Tue Mar 31 2020 05:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29029 * 124.91428 * 2 1 4 4 C 1.31777 * 117.12746 * 179.97438 * 3 2 1 5 5 C 1.33644 * 114.50079 * 0.02562 * 4 3 2 6 6 C 1.50691 * 126.03957 * 179.97438 * 5 4 3 7 7 O 1.42896 * 109.47414 * 89.99671 * 6 5 4 8 8 C 1.42905 * 114.00079 * 180.02562 * 7 6 5 9 9 H 1.09000 * 109.46889 * 29.99979 * 8 7 6 10 10 C 1.50698 * 109.46929 * 269.99435 * 8 7 6 11 11 H 1.08000 * 119.99544 * 120.00347 * 10 8 7 12 12 C 1.37868 * 120.00366 * 300.00129 * 10 8 7 13 13 N 1.31518 * 120.00116 * 0.02562 * 12 10 8 14 14 Si 1.86800 * 120.00209 * 180.02562 * 12 10 8 15 15 H 1.48503 * 109.46851 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47518 * 119.99884 * 14 12 10 17 17 H 1.48505 * 109.47161 * 240.00349 * 14 12 10 18 18 C 1.53002 * 109.46866 * 149.99838 * 8 7 6 19 19 N 1.46906 * 109.47088 * 293.29171 * 18 8 7 20 20 C 1.46893 * 109.47116 * 64.50278 * 19 18 8 21 21 C 1.46905 * 109.46821 * 184.50278 * 19 18 8 22 22 C 1.46896 * 109.47045 * 304.50127 * 19 18 8 23 23 S 1.70978 * 124.91907 * 180.31299 * 2 1 3 24 24 H 1.08997 * 109.47185 * 89.98256 * 1 2 3 25 25 H 1.09006 * 109.46841 * 209.97198 * 1 2 3 26 26 H 1.08990 * 109.47451 * 329.97404 * 1 2 3 27 27 H 1.07997 * 122.75228 * 179.97438 * 4 3 2 28 28 H 1.08999 * 109.47161 * 329.99133 * 6 5 4 29 29 H 1.09001 * 109.47076 * 209.99354 * 6 5 4 30 30 H 0.96995 * 119.99952 * 180.02562 * 13 12 10 31 31 H 1.08997 * 109.47352 * 53.29611 * 18 8 7 32 32 H 1.08997 * 109.46957 * 173.29412 * 18 8 7 33 33 H 1.09008 * 109.46811 * 50.74524 * 20 19 18 34 34 H 1.09001 * 109.47374 * 170.74516 * 20 19 18 35 35 H 1.08997 * 109.47355 * 290.75226 * 20 19 18 36 36 H 1.09000 * 109.47046 * 60.00469 * 21 19 18 37 37 H 1.08999 * 109.46718 * 179.97438 * 21 19 18 38 38 H 1.09002 * 109.47070 * 300.00233 * 21 19 18 39 39 H 1.09004 * 109.46969 * 60.00083 * 22 19 18 40 40 H 1.09000 * 109.47006 * 179.97438 * 22 19 18 41 41 H 1.09000 * 109.47705 * 300.00071 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0581 0.0000 4 6 3.5511 0.8795 0.0005 5 6 3.9355 -0.4005 0.0004 6 6 5.3575 -0.8992 0.0004 7 8 5.8070 -1.0568 1.3476 8 6 7.1516 -1.5277 1.4604 9 1 7.7295 -1.1856 0.6019 10 6 7.1545 -3.0342 1.4999 11 1 7.6823 -3.5932 0.7414 12 6 6.4835 -3.6988 2.5044 13 7 5.8404 -3.0180 3.4278 14 14 6.4877 -5.5661 2.5538 15 1 7.2771 -6.0897 1.4100 16 1 7.0963 -6.0263 3.8278 17 1 5.0927 -6.0669 2.4623 18 6 7.7767 -0.9826 2.7461 19 7 7.9209 0.4756 2.6405 20 6 6.5915 1.0938 2.5500 21 6 8.6185 0.9859 3.8283 22 6 8.6970 0.8050 1.4375 23 16 2.4857 -1.4019 -0.0077 24 1 -0.3633 0.0003 -1.0276 25 1 -0.3633 -0.8903 0.5134 26 1 -0.3634 0.8896 0.5142 27 1 4.2531 1.7002 0.0002 28 1 5.9948 -0.1796 -0.5135 29 1 5.4058 -1.8593 -0.5134 30 1 5.3686 -3.4856 4.1346 31 1 7.1344 -1.2238 3.5930 32 1 8.7574 -1.4349 2.8934 33 1 5.9608 0.7188 3.3563 34 1 6.6873 2.1761 2.6371 35 1 6.1396 0.8451 1.5898 36 1 9.6050 0.5272 3.8953 37 1 8.7259 2.0677 3.7497 38 1 8.0427 0.7414 4.7209 39 1 8.1793 0.4262 0.5562 40 1 8.8036 1.8869 1.3589 41 1 9.6835 0.3462 1.5045 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001223539475.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:24 Heat of formation + Delta-G solvation = 99.415836 kcal Electronic energy + Delta-G solvation = -21732.434410 eV Core-core repulsion = 18665.030754 eV Total energy + Delta-G solvation = -3067.403657 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.138 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.61231 -40.63254 -38.46056 -35.12860 -33.47841 -31.58812 -30.07440 -29.48104 -29.37908 -27.76626 -26.13791 -24.59148 -24.29994 -22.43944 -20.35880 -19.13777 -18.90540 -18.14334 -17.80698 -17.40852 -16.92598 -16.49434 -16.21139 -15.71822 -15.69817 -15.06820 -14.56763 -14.24495 -14.08777 -13.75716 -13.55614 -13.42481 -13.23858 -13.21236 -13.17220 -13.12541 -13.01791 -12.96929 -12.80835 -12.67624 -12.51170 -12.26947 -11.79523 -11.23954 -10.81938 -10.60208 -10.26903 -10.00687 -9.72950 -8.33508 -6.48487 -0.29686 0.39924 0.87026 1.07885 1.30377 1.43730 1.49005 1.83118 2.29861 2.87345 2.96128 3.13376 3.18691 3.26931 3.44847 4.02497 4.06030 4.13787 4.18915 4.24354 4.29981 4.37930 4.41705 4.48440 4.50860 4.53577 4.59324 4.62945 4.68922 4.80721 4.82142 4.84897 4.89297 5.01537 5.06816 5.29587 5.35413 5.62031 5.92650 6.37935 6.75037 6.82569 7.33713 8.65144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.038 3.962 3 N -0.503 5.503 4 C 0.046 3.954 5 C -0.221 4.221 6 C 0.143 3.857 7 O -0.374 6.374 8 C 0.194 3.806 9 H 0.065 0.935 10 C -0.568 4.568 11 H 0.053 0.947 12 C 0.074 3.926 13 N -0.864 5.864 14 Si 0.907 3.093 15 H -0.276 1.276 16 H -0.284 1.284 17 H -0.299 1.299 18 C 0.017 3.983 19 N -0.258 5.258 20 C -0.038 4.038 21 C -0.042 4.042 22 C -0.053 4.053 23 S 0.109 5.891 24 H 0.098 0.902 25 H 0.090 0.910 26 H 0.093 0.907 27 H 0.204 0.796 28 H 0.096 0.904 29 H 0.037 0.963 30 H 0.263 0.737 31 H 0.123 0.877 32 H 0.127 0.873 33 H 0.090 0.910 34 H 0.135 0.865 35 H 0.115 0.885 36 H 0.123 0.877 37 H 0.140 0.860 38 H 0.104 0.896 39 H 0.105 0.895 40 H 0.143 0.857 41 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.606 16.151 -0.164 18.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.239 4.239 3 N -0.219 5.219 4 C -0.105 4.105 5 C -0.342 4.342 6 C 0.064 3.936 7 O -0.294 6.294 8 C 0.138 3.862 9 H 0.083 0.917 10 C -0.606 4.606 11 H 0.071 0.929 12 C -0.133 4.133 13 N -0.500 5.500 14 Si 0.737 3.263 15 H -0.201 1.201 16 H -0.210 1.210 17 H -0.226 1.226 18 C -0.104 4.104 19 N 0.085 4.915 20 C -0.179 4.179 21 C -0.183 4.183 22 C -0.193 4.193 23 S 0.364 5.636 24 H 0.117 0.883 25 H 0.109 0.891 26 H 0.111 0.889 27 H 0.221 0.779 28 H 0.114 0.886 29 H 0.056 0.944 30 H 0.073 0.927 31 H 0.141 0.859 32 H 0.145 0.855 33 H 0.109 0.891 34 H 0.154 0.846 35 H 0.134 0.866 36 H 0.142 0.858 37 H 0.159 0.841 38 H 0.122 0.878 39 H 0.124 0.876 40 H 0.162 0.838 41 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 7.895 15.615 0.164 17.498 hybrid contribution 0.194 -1.438 0.052 1.452 sum 8.089 14.177 0.216 16.323 Atomic orbital electron populations 1.20585 0.83642 1.04967 1.04907 1.27523 1.02961 0.90946 1.02480 1.66361 1.05818 1.32116 1.17558 1.22045 0.91062 0.96015 1.01384 1.25861 0.99471 0.95927 1.12946 1.20430 0.87165 0.99328 0.86690 1.88161 1.32422 1.85617 1.23220 1.20018 0.81274 0.92083 0.92835 0.91744 1.21614 1.34369 0.93137 1.11477 0.92864 1.25082 0.93897 0.98853 0.95485 1.69737 1.31251 1.35503 1.13523 0.86331 0.77102 0.84941 0.77953 1.20104 1.20966 1.22647 1.24089 1.05731 0.75575 1.05009 1.45981 1.15106 1.14762 1.15681 1.24222 0.82577 1.01926 1.09175 1.24173 1.01290 1.05544 0.87287 1.24278 0.99661 1.08105 0.87288 1.84538 0.98993 1.13020 1.67085 0.88326 0.89095 0.88854 0.77896 0.88594 0.94419 0.92735 0.85877 0.85534 0.89127 0.84638 0.86638 0.85825 0.84128 0.87762 0.87639 0.83841 0.85582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.03 10.46 71.24 0.75 0.71 16 2 C 0.04 0.24 7.39 88.52 0.65 0.90 16 3 N -0.50 -3.64 10.54 -191.45 -2.02 -5.65 16 4 C 0.05 0.10 11.25 83.66 0.94 1.05 16 5 C -0.22 -1.00 6.23 24.64 0.15 -0.85 16 6 C 0.14 0.25 5.59 71.23 0.40 0.65 16 7 O -0.37 -1.35 6.44 -148.98 -0.96 -2.31 16 8 C 0.19 0.25 1.85 29.85 0.06 0.30 16 9 H 0.06 -0.34 5.49 -2.39 -0.01 -0.35 16 10 C -0.57 -8.57 8.89 25.60 0.23 -8.34 16 11 H 0.05 0.97 7.81 -2.91 -0.02 0.95 16 12 C 0.07 1.48 5.24 84.65 0.44 1.92 16 13 N -0.86 -17.49 10.95 21.44 0.23 -17.25 16 14 Si 0.91 19.40 29.54 68.60 2.03 21.42 16 15 H -0.28 -6.14 7.11 99.48 0.71 -5.43 16 16 H -0.28 -6.27 7.11 99.48 0.71 -5.57 16 17 H -0.30 -7.50 7.11 99.48 0.71 -6.79 16 18 C 0.02 -0.13 3.53 86.30 0.30 0.18 16 19 N -0.26 5.44 0.05 ******* -0.07 5.37 16 20 C -0.04 0.69 7.17 127.69 0.92 1.61 16 21 C -0.04 1.11 8.00 127.69 1.02 2.14 16 22 C -0.05 1.36 7.54 127.69 0.96 2.33 16 23 S 0.11 0.90 23.18 -56.49 -1.31 -0.41 16 24 H 0.10 -0.21 8.14 -2.39 -0.02 -0.23 16 25 H 0.09 -0.14 8.14 -2.38 -0.02 -0.16 16 26 H 0.09 -0.04 8.14 -2.39 -0.02 -0.05 16 27 H 0.20 -1.29 8.06 -2.91 -0.02 -1.32 16 28 H 0.10 -0.71 8.08 -2.39 -0.02 -0.73 16 29 H 0.04 0.29 8.14 -2.39 -0.02 0.27 16 30 H 0.26 5.87 8.31 -92.71 -0.77 5.10 16 31 H 0.12 0.07 6.12 -2.39 -0.01 0.05 16 32 H 0.13 -1.20 8.09 -2.39 -0.02 -1.22 16 33 H 0.09 -1.06 7.94 -2.38 -0.02 -1.08 16 34 H 0.14 -3.55 8.01 -2.39 -0.02 -3.57 16 35 H 0.12 -1.67 5.04 -2.39 -0.01 -1.69 16 36 H 0.12 -3.45 8.12 -2.39 -0.02 -3.47 16 37 H 0.14 -4.50 8.07 -2.39 -0.02 -4.52 16 38 H 0.10 -2.42 8.14 -2.39 -0.02 -2.43 16 39 H 0.11 -2.41 5.86 -2.39 -0.01 -2.42 16 40 H 0.14 -4.61 8.14 -2.39 -0.02 -4.63 16 41 H 0.13 -3.47 8.14 -2.39 -0.02 -3.49 16 Total: 0.00 -44.77 337.14 5.73 -39.04 By element: Atomic # 1 Polarization: -43.79 SS G_CDS: 1.00 Total: -42.79 kcal Atomic # 6 Polarization: -4.24 SS G_CDS: 6.82 Total: 2.58 kcal Atomic # 7 Polarization: -15.68 SS G_CDS: -1.85 Total: -17.53 kcal Atomic # 8 Polarization: -1.35 SS G_CDS: -0.96 Total: -2.31 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: 2.03 Total: 21.42 kcal Atomic # 16 Polarization: 0.90 SS G_CDS: -1.31 Total: -0.41 kcal Total: -44.77 5.73 -39.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223539475.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.460 kcal (2) G-P(sol) polarization free energy of solvation -44.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds