Wall clock time and date at job start Tue Mar 31 2020 05:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.33644 * 126.03986 * 2 1 4 4 N 1.31781 * 114.50078 * 179.97438 * 3 2 1 5 5 C 1.29024 * 117.12475 * 359.97438 * 4 3 2 6 6 C 1.50706 * 124.91592 * 179.97438 * 5 4 3 7 7 O 1.42893 * 109.47279 * 90.01936 * 6 5 4 8 8 C 1.42905 * 113.99996 * 184.75683 * 7 6 5 9 9 H 1.09001 * 109.46738 * 334.99018 * 8 7 6 10 10 C 1.50699 * 109.47307 * 214.99346 * 8 7 6 11 11 H 1.08003 * 119.99618 * 354.48405 * 10 8 7 12 12 C 1.37876 * 120.00238 * 174.47673 * 10 8 7 13 13 N 1.31516 * 119.99854 * 179.97438 * 12 10 8 14 14 Si 1.86798 * 119.99662 * 0.02562 * 12 10 8 15 15 H 1.48495 * 109.47531 * 89.99572 * 14 12 10 16 16 H 1.48504 * 109.46596 * 209.99424 * 14 12 10 17 17 H 1.48501 * 109.47101 * 329.99235 * 14 12 10 18 18 C 1.52992 * 109.47086 * 94.99242 * 8 7 6 19 19 N 1.46897 * 109.47579 * 53.71844 * 18 8 7 20 20 C 1.46905 * 109.46920 * 61.93108 * 19 18 8 21 21 C 1.46900 * 109.46958 * 301.93417 * 19 18 8 22 22 C 1.46900 * 109.47450 * 181.93526 * 19 18 8 23 23 S 1.70979 * 110.16885 * 0.22643 * 5 4 3 24 24 H 1.08994 * 109.47209 * 90.00258 * 1 2 3 25 25 H 1.08997 * 109.47078 * 210.00441 * 1 2 3 26 26 H 1.09006 * 109.47074 * 329.99996 * 1 2 3 27 27 H 1.07996 * 122.74299 * 0.02562 * 3 2 1 28 28 H 1.09001 * 109.46457 * 330.01666 * 6 5 4 29 29 H 1.09003 * 109.47072 * 210.01958 * 6 5 4 30 30 H 0.97001 * 119.99160 * 180.02562 * 13 12 10 31 31 H 1.09002 * 109.46946 * 293.71578 * 18 8 7 32 32 H 1.09003 * 109.46885 * 173.71937 * 18 8 7 33 33 H 1.09004 * 109.46835 * 280.81374 * 20 19 18 34 34 H 1.08997 * 109.46751 * 40.81279 * 20 19 18 35 35 H 1.08996 * 109.46629 * 160.81428 * 20 19 18 36 36 H 1.08992 * 109.47251 * 200.66066 * 21 19 18 37 37 H 1.09004 * 109.47106 * 320.66517 * 21 19 18 38 38 H 1.09000 * 109.47269 * 80.66180 * 21 19 18 39 39 H 1.09001 * 109.46946 * 299.99693 * 22 19 18 40 40 H 1.08999 * 109.47425 * 59.99518 * 22 19 18 41 41 H 1.08993 * 109.46880 * 180.02562 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2932 1.0807 0.0000 4 7 3.5844 0.8170 0.0005 5 6 3.9311 -0.4258 0.0015 6 6 5.3532 -0.9246 0.0017 7 8 5.8027 -1.0816 1.3489 8 6 7.1789 -1.4495 1.4634 9 1 7.4960 -1.9577 0.5526 10 6 7.3558 -2.3728 2.6412 11 1 6.5214 -2.5801 3.2949 12 6 8.5827 -2.9529 2.8843 13 7 8.7372 -3.7581 3.9126 14 14 10.0259 -2.5938 1.7540 15 1 10.7651 -1.4079 2.2564 16 1 10.9351 -3.7676 1.7241 17 1 9.5249 -2.3206 0.3830 18 6 8.0273 -0.1931 1.6683 19 7 7.5039 0.5708 2.8086 20 6 7.6001 -0.2425 4.0283 21 6 6.0982 0.9182 2.5614 22 6 8.2899 1.8004 2.9766 23 16 2.5435 -1.4248 -0.0045 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3633 -0.8899 0.5139 26 1 -0.3633 0.8900 0.5139 27 1 1.9024 2.0874 0.0004 28 1 5.9905 -0.2053 -0.5126 29 1 5.4014 -1.8850 -0.5117 30 1 9.6005 -4.1659 4.0837 31 1 7.9877 0.4226 0.7696 32 1 9.0600 -0.4804 1.8666 33 1 6.7789 -0.9588 4.0530 34 1 8.5496 -0.7778 4.0340 35 1 7.5432 0.4059 4.9026 36 1 5.8166 1.7627 3.1902 37 1 5.9693 1.1869 1.5129 38 1 5.4655 0.0626 2.7976 39 1 9.3330 1.5426 3.1601 40 1 8.2186 2.4038 2.0717 41 1 7.9017 2.3668 3.8231 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223859896.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:51 Heat of formation + Delta-G solvation = 117.855583 kcal Electronic energy + Delta-G solvation = -21876.290071 eV Core-core repulsion = 18809.686021 eV Total energy + Delta-G solvation = -3066.604049 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.138 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.31475 -40.78053 -38.80856 -35.01362 -33.91799 -32.22294 -30.29349 -30.01892 -29.86422 -27.82766 -26.50280 -24.50818 -24.40404 -22.94743 -20.61972 -19.65564 -19.08398 -18.41970 -18.27198 -17.83246 -16.92848 -16.58754 -16.51450 -15.87631 -15.53509 -15.27948 -15.02904 -14.68109 -14.31515 -14.19017 -14.14707 -13.92371 -13.87114 -13.83399 -13.67462 -13.46815 -13.34647 -13.16384 -12.71274 -12.62719 -12.18539 -12.07604 -11.46189 -11.09943 -10.74338 -10.59717 -10.31438 -10.23703 -9.88400 -7.87239 -5.97052 -0.43392 0.26145 0.51905 0.72259 1.54868 1.65971 1.72348 1.93408 2.40152 2.50291 2.53982 2.63336 2.67745 3.23132 3.26755 3.34553 3.38865 3.67821 3.69680 3.76560 3.82489 3.85221 3.86231 3.91038 4.08494 4.08903 4.14692 4.24120 4.31772 4.41391 4.43262 4.54131 4.67475 4.83500 4.84072 5.00970 5.11751 5.58553 5.94450 6.61406 6.69181 7.16381 7.60745 9.21403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.220 4.220 3 C 0.026 3.974 4 N -0.461 5.461 5 C 0.030 3.970 6 C 0.130 3.870 7 O -0.368 6.368 8 C 0.172 3.828 9 H 0.067 0.933 10 C -0.560 4.560 11 H 0.100 0.900 12 C 0.086 3.914 13 N -0.846 5.846 14 Si 0.849 3.151 15 H -0.270 1.270 16 H -0.268 1.268 17 H -0.259 1.259 18 C -0.037 4.037 19 N -0.249 5.249 20 C -0.027 4.027 21 C -0.028 4.028 22 C -0.045 4.045 23 S 0.167 5.833 24 H 0.079 0.921 25 H 0.073 0.927 26 H 0.082 0.918 27 H 0.175 0.825 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.284 0.716 31 H 0.102 0.898 32 H 0.113 0.887 33 H 0.151 0.849 34 H 0.117 0.883 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.109 0.891 38 H 0.142 0.858 39 H 0.111 0.889 40 H 0.109 0.891 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.701 12.792 -2.129 13.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.341 4.341 3 C -0.125 4.125 4 N -0.177 5.177 5 C -0.247 4.247 6 C 0.051 3.949 7 O -0.287 6.287 8 C 0.114 3.886 9 H 0.085 0.915 10 C -0.596 4.596 11 H 0.118 0.882 12 C -0.125 4.125 13 N -0.478 5.478 14 Si 0.675 3.325 15 H -0.197 1.197 16 H -0.192 1.192 17 H -0.183 1.183 18 C -0.159 4.159 19 N 0.093 4.907 20 C -0.167 4.167 21 C -0.169 4.169 22 C -0.187 4.187 23 S 0.421 5.579 24 H 0.098 0.902 25 H 0.092 0.908 26 H 0.100 0.900 27 H 0.192 0.808 28 H 0.092 0.908 29 H 0.097 0.903 30 H 0.095 0.905 31 H 0.120 0.880 32 H 0.131 0.869 33 H 0.169 0.831 34 H 0.136 0.864 35 H 0.102 0.898 36 H 0.111 0.889 37 H 0.128 0.872 38 H 0.160 0.840 39 H 0.130 0.870 40 H 0.128 0.872 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -3.379 11.952 -1.835 12.555 hybrid contribution 0.903 0.964 -0.891 1.594 sum -2.475 12.916 -2.726 13.431 Atomic orbital electron populations 1.20292 0.86522 1.03808 1.03292 1.26199 1.02111 0.95519 1.10277 1.21659 0.86754 1.00165 1.03934 1.66202 1.18051 1.18576 1.14910 1.26491 1.00332 0.91788 1.06096 1.20850 0.87140 1.00406 0.86543 1.88072 1.27893 1.89491 1.23255 1.20593 0.77684 0.88899 1.01388 0.91520 1.20729 0.98997 1.28817 1.11069 0.88177 1.24864 0.98343 0.94402 0.94847 1.69756 1.26085 1.26129 1.25805 0.87401 0.83413 0.79864 0.81784 1.19688 1.19236 1.18339 1.25065 1.03681 0.99158 0.87986 1.45697 1.14778 1.13813 1.16396 1.24666 1.12209 0.97383 0.82473 1.24370 0.79735 1.06324 1.06476 1.24082 1.00014 0.87179 1.07453 1.84325 0.97518 1.10080 1.65980 0.90225 0.90765 0.89972 0.80773 0.90789 0.90337 0.90477 0.87989 0.86906 0.83114 0.86434 0.89760 0.88893 0.87222 0.84037 0.87041 0.87197 0.86770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 0.24 10.42 36.00 0.38 0.61 16 2 C -0.22 0.20 6.60 -35.92 -0.24 -0.03 16 3 C 0.03 -0.02 11.25 -19.18 -0.22 -0.24 16 4 N -0.46 0.04 10.54 -11.86 -0.13 -0.08 16 5 C 0.03 -0.01 7.02 -13.45 -0.09 -0.11 16 6 C 0.13 -0.20 5.73 36.01 0.21 0.00 16 7 O -0.37 0.35 5.63 -35.23 -0.20 0.15 16 8 C 0.17 0.01 1.98 -27.89 -0.06 -0.04 16 9 H 0.07 0.08 6.43 -51.93 -0.33 -0.26 16 10 C -0.56 -2.61 5.93 -34.44 -0.20 -2.82 16 11 H 0.10 0.76 7.22 -52.48 -0.38 0.38 16 12 C 0.09 0.61 4.21 -17.82 -0.08 0.54 16 13 N -0.85 -9.16 13.96 55.43 0.77 -8.39 16 14 Si 0.85 4.34 24.64 -169.99 -4.19 0.15 16 15 H -0.27 -0.87 6.85 56.52 0.39 -0.49 16 16 H -0.27 -2.17 7.11 56.52 0.40 -1.77 16 17 H -0.26 -0.98 6.39 56.52 0.36 -0.62 16 18 C -0.04 0.15 3.73 -3.83 -0.01 0.14 16 19 N -0.25 1.75 0.05 -395.63 -0.02 1.73 16 20 C -0.03 0.13 6.93 60.07 0.42 0.54 16 21 C -0.03 0.19 7.00 60.06 0.42 0.61 16 22 C -0.05 0.46 7.86 60.06 0.47 0.94 16 23 S 0.17 -0.04 23.18 -107.50 -2.49 -2.53 16 24 H 0.08 -0.27 8.14 -51.93 -0.42 -0.70 16 25 H 0.07 -0.23 8.14 -51.93 -0.42 -0.65 16 26 H 0.08 -0.33 8.14 -51.93 -0.42 -0.75 16 27 H 0.18 -0.48 8.06 -52.49 -0.42 -0.90 16 28 H 0.07 -0.25 8.14 -51.93 -0.42 -0.67 16 29 H 0.08 -0.12 8.14 -51.93 -0.42 -0.54 16 30 H 0.28 2.99 8.31 -40.82 -0.34 2.65 16 31 H 0.10 -0.70 8.04 -51.93 -0.42 -1.11 16 32 H 0.11 -0.33 3.84 -51.93 -0.20 -0.53 16 33 H 0.15 -0.27 4.86 -51.93 -0.25 -0.52 16 34 H 0.12 -0.23 6.12 -51.93 -0.32 -0.54 16 35 H 0.08 -0.62 7.81 -51.93 -0.41 -1.03 16 36 H 0.09 -0.84 7.78 -51.93 -0.40 -1.24 16 37 H 0.11 -0.69 6.87 -51.93 -0.36 -1.05 16 38 H 0.14 -0.61 5.41 -51.93 -0.28 -0.89 16 39 H 0.11 -1.14 8.14 -51.93 -0.42 -1.56 16 40 H 0.11 -1.26 8.14 -51.93 -0.42 -1.68 16 41 H 0.11 -1.35 7.87 -51.93 -0.41 -1.76 16 LS Contribution 322.59 15.07 4.86 4.86 Total: 0.00 -13.46 322.59 -6.72 -20.18 By element: Atomic # 1 Polarization: -9.89 SS G_CDS: -6.33 Total: -16.22 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: 0.99 Total: 0.14 kcal Atomic # 7 Polarization: -7.37 SS G_CDS: 0.63 Total: -6.74 kcal Atomic # 8 Polarization: 0.35 SS G_CDS: -0.20 Total: 0.15 kcal Atomic # 14 Polarization: 4.34 SS G_CDS: -4.19 Total: 0.15 kcal Atomic # 16 Polarization: -0.04 SS G_CDS: -2.49 Total: -2.53 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -13.46 -6.72 -20.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223859896.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.040 kcal (2) G-P(sol) polarization free energy of solvation -13.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds