Wall clock time and date at job start Tue Mar 31 2020 05:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.33644 * 126.03986 * 2 1 4 4 N 1.31781 * 114.50078 * 179.97438 * 3 2 1 5 5 C 1.29024 * 117.12475 * 359.97438 * 4 3 2 6 6 C 1.50706 * 124.91592 * 179.97438 * 5 4 3 7 7 O 1.42893 * 109.47279 * 90.01936 * 6 5 4 8 8 C 1.42905 * 113.99996 * 184.75683 * 7 6 5 9 9 H 1.09001 * 109.46738 * 334.99018 * 8 7 6 10 10 C 1.50699 * 109.47307 * 214.99346 * 8 7 6 11 11 H 1.08003 * 119.99618 * 354.48405 * 10 8 7 12 12 C 1.37876 * 120.00238 * 174.47673 * 10 8 7 13 13 N 1.31516 * 119.99854 * 179.97438 * 12 10 8 14 14 Si 1.86798 * 119.99662 * 0.02562 * 12 10 8 15 15 H 1.48495 * 109.47531 * 89.99572 * 14 12 10 16 16 H 1.48504 * 109.46596 * 209.99424 * 14 12 10 17 17 H 1.48501 * 109.47101 * 329.99235 * 14 12 10 18 18 C 1.52992 * 109.47086 * 94.99242 * 8 7 6 19 19 N 1.46897 * 109.47579 * 53.71844 * 18 8 7 20 20 C 1.46905 * 109.46920 * 61.93108 * 19 18 8 21 21 C 1.46900 * 109.46958 * 301.93417 * 19 18 8 22 22 C 1.46900 * 109.47450 * 181.93526 * 19 18 8 23 23 S 1.70979 * 110.16885 * 0.22643 * 5 4 3 24 24 H 1.08994 * 109.47209 * 90.00258 * 1 2 3 25 25 H 1.08997 * 109.47078 * 210.00441 * 1 2 3 26 26 H 1.09006 * 109.47074 * 329.99996 * 1 2 3 27 27 H 1.07996 * 122.74299 * 0.02562 * 3 2 1 28 28 H 1.09001 * 109.46457 * 330.01666 * 6 5 4 29 29 H 1.09003 * 109.47072 * 210.01958 * 6 5 4 30 30 H 0.97001 * 119.99160 * 180.02562 * 13 12 10 31 31 H 1.09002 * 109.46946 * 293.71578 * 18 8 7 32 32 H 1.09003 * 109.46885 * 173.71937 * 18 8 7 33 33 H 1.09004 * 109.46835 * 280.81374 * 20 19 18 34 34 H 1.08997 * 109.46751 * 40.81279 * 20 19 18 35 35 H 1.08996 * 109.46629 * 160.81428 * 20 19 18 36 36 H 1.08992 * 109.47251 * 200.66066 * 21 19 18 37 37 H 1.09004 * 109.47106 * 320.66517 * 21 19 18 38 38 H 1.09000 * 109.47269 * 80.66180 * 21 19 18 39 39 H 1.09001 * 109.46946 * 299.99693 * 22 19 18 40 40 H 1.08999 * 109.47425 * 59.99518 * 22 19 18 41 41 H 1.08993 * 109.46880 * 180.02562 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2932 1.0807 0.0000 4 7 3.5844 0.8170 0.0005 5 6 3.9311 -0.4258 0.0015 6 6 5.3532 -0.9246 0.0017 7 8 5.8027 -1.0816 1.3489 8 6 7.1789 -1.4495 1.4634 9 1 7.4960 -1.9577 0.5526 10 6 7.3558 -2.3728 2.6412 11 1 6.5214 -2.5801 3.2949 12 6 8.5827 -2.9529 2.8843 13 7 8.7372 -3.7581 3.9126 14 14 10.0259 -2.5938 1.7540 15 1 10.7651 -1.4079 2.2564 16 1 10.9351 -3.7676 1.7241 17 1 9.5249 -2.3206 0.3830 18 6 8.0273 -0.1931 1.6683 19 7 7.5039 0.5708 2.8086 20 6 7.6001 -0.2425 4.0283 21 6 6.0982 0.9182 2.5614 22 6 8.2899 1.8004 2.9766 23 16 2.5435 -1.4248 -0.0045 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3633 -0.8899 0.5139 26 1 -0.3633 0.8900 0.5139 27 1 1.9024 2.0874 0.0004 28 1 5.9905 -0.2053 -0.5126 29 1 5.4014 -1.8850 -0.5117 30 1 9.6005 -4.1659 4.0837 31 1 7.9877 0.4226 0.7696 32 1 9.0600 -0.4804 1.8666 33 1 6.7789 -0.9588 4.0530 34 1 8.5496 -0.7778 4.0340 35 1 7.5432 0.4059 4.9026 36 1 5.8166 1.7627 3.1902 37 1 5.9693 1.1869 1.5129 38 1 5.4655 0.0626 2.7976 39 1 9.3330 1.5426 3.1601 40 1 8.2186 2.4038 2.0717 41 1 7.9017 2.3668 3.8231 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001223859896.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:51 Heat of formation + Delta-G solvation = 114.874757 kcal Electronic energy + Delta-G solvation = -21876.419329 eV Core-core repulsion = 18809.686021 eV Total energy + Delta-G solvation = -3066.733308 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.138 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.88875 -40.68257 -38.70461 -35.32042 -33.85714 -32.24156 -30.01572 -29.63423 -29.37074 -27.73176 -26.38427 -24.41933 -24.19863 -22.85461 -20.53260 -19.65714 -19.02741 -18.28410 -17.90251 -17.52371 -16.77233 -16.62791 -16.35538 -15.85419 -15.45593 -15.26508 -14.67728 -14.58888 -14.22526 -13.95395 -13.80237 -13.68627 -13.63905 -13.47697 -13.30392 -13.19505 -13.02693 -12.96226 -12.72762 -12.58515 -12.16731 -12.06143 -11.84356 -11.38353 -10.86735 -10.69829 -10.47038 -10.19290 -9.79097 -8.43008 -6.49544 -0.35752 0.34154 0.80280 1.02594 1.14314 1.31753 1.45727 1.74356 2.18035 2.60556 2.80025 2.99594 3.07751 3.16738 3.38710 3.86544 3.90743 3.99581 4.02770 4.15291 4.21170 4.25846 4.28049 4.38126 4.41348 4.46460 4.59043 4.62038 4.69519 4.69935 4.71694 4.77951 4.88430 5.05698 5.12427 5.24172 5.27806 5.29437 5.76299 6.31580 6.62893 6.67743 7.10523 8.69112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.218 4.218 3 C 0.015 3.985 4 N -0.463 5.463 5 C 0.029 3.971 6 C 0.127 3.873 7 O -0.369 6.369 8 C 0.170 3.830 9 H 0.062 0.938 10 C -0.525 4.525 11 H 0.059 0.941 12 C 0.043 3.957 13 N -0.918 5.918 14 Si 0.889 3.111 15 H -0.234 1.234 16 H -0.317 1.317 17 H -0.229 1.229 18 C -0.029 4.029 19 N -0.241 5.241 20 C -0.021 4.021 21 C -0.025 4.025 22 C -0.050 4.050 23 S 0.129 5.871 24 H 0.086 0.914 25 H 0.072 0.928 26 H 0.096 0.904 27 H 0.195 0.805 28 H 0.102 0.898 29 H 0.074 0.926 30 H 0.270 0.730 31 H 0.147 0.853 32 H 0.106 0.894 33 H 0.113 0.887 34 H 0.090 0.910 35 H 0.118 0.882 36 H 0.123 0.877 37 H 0.112 0.888 38 H 0.110 0.890 39 H 0.113 0.887 40 H 0.133 0.867 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.805 16.700 -3.616 17.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.339 4.339 3 C -0.135 4.135 4 N -0.179 5.179 5 C -0.248 4.248 6 C 0.048 3.952 7 O -0.288 6.288 8 C 0.112 3.888 9 H 0.080 0.920 10 C -0.562 4.562 11 H 0.077 0.923 12 C -0.159 4.159 13 N -0.554 5.554 14 Si 0.714 3.286 15 H -0.159 1.159 16 H -0.246 1.246 17 H -0.152 1.152 18 C -0.152 4.152 19 N 0.102 4.898 20 C -0.163 4.163 21 C -0.165 4.165 22 C -0.190 4.190 23 S 0.383 5.617 24 H 0.104 0.896 25 H 0.091 0.909 26 H 0.115 0.885 27 H 0.212 0.788 28 H 0.119 0.881 29 H 0.092 0.908 30 H 0.080 0.920 31 H 0.164 0.836 32 H 0.124 0.876 33 H 0.132 0.868 34 H 0.109 0.891 35 H 0.137 0.863 36 H 0.141 0.859 37 H 0.131 0.869 38 H 0.128 0.872 39 H 0.132 0.868 40 H 0.152 0.848 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -3.509 15.931 -3.355 16.655 hybrid contribution 0.741 -0.213 -0.431 0.883 sum -2.768 15.718 -3.786 16.403 Atomic orbital electron populations 1.20382 0.85234 1.04465 1.03902 1.26438 1.02941 0.94737 1.09795 1.22034 0.86627 1.01070 1.03810 1.66220 1.18398 1.18352 1.14892 1.26632 1.00434 0.91624 1.06103 1.20971 0.87092 1.01013 0.86166 1.88135 1.27304 1.89439 1.23918 1.20355 0.79152 0.90561 0.98739 0.92026 1.20851 0.96739 1.27755 1.10903 0.92263 1.25390 1.00736 0.94335 0.95443 1.69942 1.25837 1.30285 1.29356 0.86787 0.80620 0.79026 0.82144 1.15870 1.24580 1.15223 1.24703 1.01612 0.97991 0.90889 1.45553 1.15405 1.14590 1.14262 1.24308 1.08999 0.97930 0.85037 1.24281 0.79061 1.05921 1.07264 1.24351 0.99600 0.85386 1.09691 1.84473 0.98891 1.11619 1.66747 0.89566 0.90861 0.88522 0.78814 0.88063 0.90793 0.92013 0.83561 0.87643 0.86828 0.89088 0.86335 0.85918 0.86915 0.87173 0.86816 0.84847 0.84631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 0.52 10.42 71.23 0.74 1.26 16 2 C -0.22 0.47 6.60 24.64 0.16 0.63 16 3 C 0.02 -0.04 11.25 83.66 0.94 0.90 16 4 N -0.46 0.64 10.54 -191.44 -2.02 -1.38 16 5 C 0.03 -0.03 7.02 88.52 0.62 0.59 16 6 C 0.13 -0.49 5.73 71.24 0.41 -0.08 16 7 O -0.37 0.65 5.63 -148.98 -0.84 -0.19 16 8 C 0.17 0.01 1.98 29.85 0.06 0.07 16 9 H 0.06 0.09 6.43 -2.39 -0.02 0.08 16 10 C -0.52 -6.30 5.93 25.60 0.15 -6.15 16 11 H 0.06 1.18 7.22 -2.91 -0.02 1.16 16 12 C 0.04 0.75 4.21 84.65 0.36 1.11 16 13 N -0.92 -24.37 13.96 21.45 0.30 -24.08 16 14 Si 0.89 9.49 24.64 68.60 1.69 11.18 16 15 H -0.23 -1.06 6.85 99.48 0.68 -0.38 16 16 H -0.32 -6.09 7.11 99.48 0.71 -5.39 16 17 H -0.23 -1.25 6.39 99.48 0.64 -0.62 16 18 C -0.03 0.31 3.73 86.30 0.32 0.63 16 19 N -0.24 3.84 0.05 ******* -0.07 3.78 16 20 C -0.02 0.19 6.93 127.69 0.89 1.07 16 21 C -0.02 0.38 7.00 127.69 0.89 1.28 16 22 C -0.05 1.21 7.86 127.69 1.00 2.22 16 23 S 0.13 0.04 23.18 -56.49 -1.31 -1.27 16 24 H 0.09 -0.65 8.14 -2.39 -0.02 -0.67 16 25 H 0.07 -0.44 8.14 -2.39 -0.02 -0.46 16 26 H 0.10 -0.89 8.14 -2.38 -0.02 -0.91 16 27 H 0.20 -1.42 8.06 -2.91 -0.02 -1.45 16 28 H 0.10 -0.94 8.14 -2.39 -0.02 -0.96 16 29 H 0.07 -0.21 8.14 -2.39 -0.02 -0.23 16 30 H 0.27 7.18 8.31 -92.71 -0.77 6.41 16 31 H 0.15 -2.70 8.04 -2.39 -0.02 -2.72 16 32 H 0.11 -0.86 3.84 -2.39 -0.01 -0.87 16 33 H 0.11 -0.09 4.86 -2.39 -0.01 -0.10 16 34 H 0.09 -0.22 6.12 -2.39 -0.01 -0.23 16 35 H 0.12 -1.85 7.81 -2.39 -0.02 -1.87 16 36 H 0.12 -2.60 7.78 -2.39 -0.02 -2.62 16 37 H 0.11 -1.75 6.87 -2.38 -0.02 -1.77 16 38 H 0.11 -0.91 5.41 -2.39 -0.01 -0.93 16 39 H 0.11 -2.70 8.14 -2.39 -0.02 -2.72 16 40 H 0.13 -3.74 8.14 -2.39 -0.02 -3.76 16 41 H 0.14 -3.78 7.87 -2.39 -0.02 -3.80 16 Total: 0.00 -38.45 322.59 5.22 -33.23 By element: Atomic # 1 Polarization: -25.72 SS G_CDS: 0.92 Total: -24.80 kcal Atomic # 6 Polarization: -3.01 SS G_CDS: 6.55 Total: 3.53 kcal Atomic # 7 Polarization: -19.89 SS G_CDS: -1.79 Total: -21.68 kcal Atomic # 8 Polarization: 0.65 SS G_CDS: -0.84 Total: -0.19 kcal Atomic # 14 Polarization: 9.49 SS G_CDS: 1.69 Total: 11.18 kcal Atomic # 16 Polarization: 0.04 SS G_CDS: -1.31 Total: -1.27 kcal Total: -38.45 5.22 -33.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223859896.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.101 kcal (2) G-P(sol) polarization free energy of solvation -38.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds