Wall clock time and date at job start Tue Mar 31 2020 05:58:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47136 * 2 1 4 4 O 1.42899 * 109.46956 * 119.99668 * 2 1 3 5 5 C 1.42898 * 114.00344 * 270.00317 * 4 2 1 6 6 H 1.09000 * 109.47254 * 29.99770 * 5 4 2 7 7 C 1.50702 * 109.47216 * 269.99946 * 5 4 2 8 8 H 1.08004 * 120.00072 * 125.55448 * 7 5 4 9 9 C 1.37872 * 119.99762 * 305.55734 * 7 5 4 10 10 N 1.31518 * 120.00038 * 198.32518 * 9 7 5 11 11 Si 1.86803 * 120.00296 * 18.32973 * 9 7 5 12 12 H 1.48490 * 109.47266 * 179.97438 * 11 9 7 13 13 H 1.48503 * 109.46653 * 299.99980 * 11 9 7 14 14 H 1.48501 * 109.47094 * 59.99747 * 11 9 7 15 15 C 1.52995 * 109.47480 * 149.99843 * 5 4 2 16 16 N 1.46900 * 109.47351 * 292.58052 * 15 5 4 17 17 C 1.46908 * 109.46734 * 64.07151 * 16 15 5 18 18 C 1.46894 * 109.47429 * 184.06879 * 16 15 5 19 19 C 1.46894 * 109.47134 * 304.07725 * 16 15 5 20 20 C 1.50698 * 109.47163 * 239.99678 * 2 1 3 21 21 N 1.29033 * 124.91291 * 105.00450 * 20 2 1 22 22 C 1.31779 * 117.11797 * 179.97438 * 21 20 2 23 23 C 1.33636 * 114.50642 * 359.97438 * 22 21 20 24 24 S 1.70975 * 124.91677 * 284.69469 * 20 2 1 25 25 H 1.09000 * 109.47136 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46968 * 300.00453 * 1 2 3 27 27 H 1.09000 * 109.46853 * 59.99883 * 1 2 3 28 28 H 0.96999 * 119.99704 * 354.93067 * 10 9 7 29 29 H 1.09004 * 109.47220 * 52.58337 * 15 5 4 30 30 H 1.09001 * 109.47374 * 172.58631 * 15 5 4 31 31 H 1.09007 * 109.46976 * 51.06589 * 17 16 15 32 32 H 1.09002 * 109.46691 * 171.05912 * 17 16 15 33 33 H 1.08993 * 109.47095 * 291.06198 * 17 16 15 34 34 H 1.09007 * 109.47140 * 60.00806 * 18 16 15 35 35 H 1.08996 * 109.47434 * 179.97438 * 18 16 15 36 36 H 1.08996 * 109.47801 * 300.00625 * 18 16 15 37 37 H 1.09000 * 109.47644 * 59.99918 * 19 16 15 38 38 H 1.09006 * 109.47263 * 179.97438 * 19 16 15 39 39 H 1.08999 * 109.47317 * 299.99264 * 19 16 15 40 40 H 1.08008 * 122.74368 * 180.02562 * 22 21 20 41 41 H 1.08002 * 126.03944 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.2000 0.1830 2.2941 6 1 1.4939 1.0119 2.2462 7 6 3.6077 0.7209 2.2803 8 1 3.7790 1.7866 2.3194 9 6 4.6768 -0.1474 2.2178 10 7 5.8780 0.2626 2.5626 11 14 4.4195 -1.9061 1.6433 12 1 5.7164 -2.6290 1.6658 13 1 3.4574 -2.5863 2.5472 14 1 3.8801 -1.9010 0.2597 15 6 1.9695 -0.6095 3.5824 16 7 0.5521 -0.9826 3.6809 17 6 0.2066 -1.8888 2.5774 18 6 0.3115 -1.6582 4.9628 19 6 -0.2791 0.2258 3.6005 20 6 2.0324 -0.7105 -1.2304 21 7 2.5368 -0.1279 -2.2653 22 6 2.9289 -0.9007 -3.2582 23 6 2.7455 -2.2077 -3.0489 24 16 2.0233 -2.4055 -1.4540 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 6.0258 1.1939 2.7901 29 1 2.5825 -1.5108 3.5692 30 1 2.2440 0.0041 4.4405 31 1 0.9253 -2.7076 2.5411 32 1 -0.7941 -2.2905 2.7369 33 1 0.2323 -1.3407 1.6356 34 1 0.5678 -0.9859 5.7816 35 1 -0.7403 -1.9347 5.0361 36 1 0.9282 -2.5549 5.0225 37 1 -0.1006 0.7271 2.6492 38 1 -1.3309 -0.0511 3.6731 39 1 -0.0228 0.8982 4.4192 40 1 3.3637 -0.5096 -4.1663 41 1 2.9988 -3.0027 -3.7347 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224004691.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:55 Heat of formation + Delta-G solvation = 119.831333 kcal Electronic energy + Delta-G solvation = -22591.938967 eV Core-core repulsion = 19525.420593 eV Total energy + Delta-G solvation = -3066.518374 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.138 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.59874 -40.54615 -39.11422 -35.02017 -33.31011 -31.55314 -30.83705 -30.51263 -30.05456 -27.70806 -26.50122 -24.73908 -23.41587 -22.68538 -20.83066 -19.63293 -19.11825 -18.84804 -18.59796 -18.30652 -17.24532 -16.66295 -16.28686 -15.62436 -15.54557 -15.08199 -14.92459 -14.84905 -14.61970 -14.40130 -14.31273 -14.20299 -14.15441 -13.98748 -13.75517 -13.58649 -13.22144 -12.96358 -12.55209 -12.32045 -12.08040 -11.92633 -11.38196 -10.61065 -10.46405 -10.35420 -10.11254 -9.79893 -9.39206 -8.01216 -5.88762 -0.10468 0.11033 0.57869 0.97787 1.80332 1.97974 2.11151 2.14527 2.16424 2.30622 2.39438 2.67894 2.99544 3.01902 3.10766 3.20316 3.37269 3.40341 3.46119 3.49079 3.55173 3.60619 3.70049 3.78593 3.87834 3.97348 4.02234 4.06549 4.16434 4.38220 4.40708 4.46108 4.63623 4.72960 4.78577 4.93239 5.32670 5.95393 6.15416 6.80912 6.95880 7.26075 7.97093 9.35588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.169 3.831 3 H 0.104 0.896 4 O -0.399 6.399 5 C 0.173 3.827 6 H 0.052 0.948 7 C -0.640 4.640 8 H 0.073 0.927 9 C 0.046 3.954 10 N -0.853 5.853 11 Si 1.069 2.931 12 H -0.299 1.299 13 H -0.295 1.295 14 H -0.256 1.256 15 C -0.015 4.015 16 N -0.272 5.272 17 C -0.062 4.062 18 C -0.044 4.044 19 C -0.050 4.050 20 C 0.058 3.942 21 N -0.466 5.466 22 C 0.040 3.960 23 C -0.264 4.264 24 S 0.140 5.860 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.081 0.919 28 H 0.281 0.719 29 H 0.131 0.869 30 H 0.133 0.867 31 H 0.117 0.883 32 H 0.103 0.897 33 H 0.142 0.858 34 H 0.115 0.885 35 H 0.112 0.888 36 H 0.116 0.884 37 H 0.120 0.880 38 H 0.112 0.888 39 H 0.118 0.882 40 H 0.177 0.823 41 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.855 -5.222 6.036 20.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.108 3.892 3 H 0.121 0.879 4 O -0.320 6.320 5 C 0.117 3.883 6 H 0.070 0.930 7 C -0.677 4.677 8 H 0.091 0.909 9 C -0.168 4.168 10 N -0.481 5.481 11 Si 0.901 3.099 12 H -0.226 1.226 13 H -0.224 1.224 14 H -0.181 1.181 15 C -0.133 4.133 16 N 0.070 4.930 17 C -0.203 4.203 18 C -0.186 4.186 19 C -0.191 4.191 20 C -0.220 4.220 21 N -0.181 5.181 22 C -0.111 4.111 23 C -0.403 4.403 24 S 0.394 5.606 25 H 0.087 0.913 26 H 0.083 0.917 27 H 0.100 0.900 28 H 0.092 0.908 29 H 0.149 0.851 30 H 0.151 0.849 31 H 0.135 0.865 32 H 0.122 0.878 33 H 0.160 0.840 34 H 0.134 0.866 35 H 0.130 0.870 36 H 0.134 0.866 37 H 0.139 0.861 38 H 0.131 0.869 39 H 0.136 0.864 40 H 0.194 0.806 41 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -18.276 -7.078 6.456 20.635 hybrid contribution -0.055 2.001 -0.594 2.088 sum -18.331 -5.077 5.862 19.904 Atomic orbital electron populations 1.22608 0.95034 1.02703 1.03482 1.20038 0.91632 0.96867 0.80687 0.87853 1.87719 1.85664 1.38173 1.20438 1.20435 1.00065 0.87342 0.80423 0.93002 1.22018 0.88872 0.95830 1.60938 0.90932 1.26121 0.92454 1.06675 0.91558 1.70884 1.24122 1.19539 1.33525 0.83726 0.74561 0.72967 0.78663 1.22649 1.22395 1.18131 1.25544 0.75859 1.06608 1.05328 1.46469 1.17424 1.14694 1.14444 1.24707 1.05053 0.97623 0.92877 1.24069 1.07081 1.02299 0.85159 1.24173 0.97551 0.88037 1.09367 1.26696 1.02590 0.94240 0.98424 1.66171 1.11922 1.39188 1.00804 1.21794 1.01543 0.88939 0.98829 1.27162 1.10864 1.01614 1.00669 1.83726 1.56467 1.09049 1.11385 0.91326 0.91663 0.90000 0.90823 0.85139 0.84944 0.86476 0.87804 0.83998 0.86595 0.86958 0.86588 0.86135 0.86897 0.86366 0.80612 0.80508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 0.82 7.98 37.16 0.30 1.11 16 2 C 0.17 0.04 3.02 -27.88 -0.08 -0.04 16 3 H 0.10 0.26 7.79 -51.93 -0.40 -0.14 16 4 O -0.40 0.07 3.12 -35.23 -0.11 -0.04 16 5 C 0.17 -0.06 1.62 -27.88 -0.05 -0.10 16 6 H 0.05 -0.14 5.35 -51.93 -0.28 -0.42 16 7 C -0.64 -5.00 9.27 -34.44 -0.32 -5.32 16 8 H 0.07 0.82 8.06 -52.48 -0.42 0.40 16 9 C 0.05 0.50 5.34 -17.82 -0.10 0.41 16 10 N -0.85 -12.81 13.70 55.43 0.76 -12.05 16 11 Si 1.07 8.03 24.91 -169.99 -4.23 3.80 16 12 H -0.30 -3.33 7.11 56.52 0.40 -2.93 16 13 H -0.29 -0.81 5.48 56.52 0.31 -0.50 16 14 H -0.26 -1.70 4.31 56.52 0.24 -1.46 16 15 C -0.02 0.08 3.53 -3.83 -0.01 0.06 16 16 N -0.27 2.96 0.05 -395.62 -0.02 2.94 16 17 C -0.06 0.64 7.15 60.07 0.43 1.07 16 18 C -0.04 0.60 8.00 60.06 0.48 1.08 16 19 C -0.05 0.62 7.55 60.06 0.45 1.07 16 20 C 0.06 0.18 5.66 -13.45 -0.08 0.10 16 21 N -0.47 -2.47 10.54 -11.86 -0.13 -2.59 16 22 C 0.04 0.14 11.35 -19.19 -0.22 -0.08 16 23 C -0.26 -0.50 11.37 29.12 0.33 -0.17 16 24 S 0.14 0.20 21.38 -107.50 -2.30 -2.10 16 25 H 0.07 -0.41 7.06 -51.93 -0.37 -0.78 16 26 H 0.06 -0.49 5.57 -51.93 -0.29 -0.78 16 27 H 0.08 -0.28 8.14 -51.93 -0.42 -0.70 16 28 H 0.28 4.26 8.73 -40.82 -0.36 3.91 16 29 H 0.13 -0.39 4.71 -51.93 -0.24 -0.64 16 30 H 0.13 -0.74 8.09 -51.93 -0.42 -1.16 16 31 H 0.12 -1.06 7.96 -51.93 -0.41 -1.47 16 32 H 0.10 -1.39 8.01 -51.93 -0.42 -1.81 16 33 H 0.14 -1.19 2.08 -51.93 -0.11 -1.30 16 34 H 0.12 -1.62 8.12 -51.93 -0.42 -2.04 16 35 H 0.11 -1.73 8.08 -51.93 -0.42 -2.15 16 36 H 0.12 -1.50 8.14 -51.93 -0.42 -1.92 16 37 H 0.12 -1.31 3.57 -51.93 -0.19 -1.50 16 38 H 0.11 -1.68 8.14 -51.93 -0.42 -2.11 16 39 H 0.12 -1.54 8.14 -51.93 -0.42 -1.96 16 40 H 0.18 0.21 8.06 -52.48 -0.42 -0.21 16 41 H 0.18 -0.13 8.06 -52.49 -0.42 -0.55 16 LS Contribution 314.27 15.07 4.74 4.74 Total: 0.00 -21.87 314.27 -6.48 -28.34 By element: Atomic # 1 Polarization: -15.91 SS G_CDS: -6.33 Total: -22.24 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: 1.14 Total: -0.81 kcal Atomic # 7 Polarization: -12.31 SS G_CDS: 0.61 Total: -11.70 kcal Atomic # 8 Polarization: 0.07 SS G_CDS: -0.11 Total: -0.04 kcal Atomic # 14 Polarization: 8.03 SS G_CDS: -4.23 Total: 3.80 kcal Atomic # 16 Polarization: 0.20 SS G_CDS: -2.30 Total: -2.10 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -21.87 -6.48 -28.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224004691.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.176 kcal (2) G-P(sol) polarization free energy of solvation -21.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds