Wall clock time and date at job start Tue Mar 31 2020 05:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47136 * 2 1 4 4 O 1.42899 * 109.46956 * 119.99668 * 2 1 3 5 5 C 1.42898 * 114.00344 * 270.00317 * 4 2 1 6 6 H 1.09000 * 109.47254 * 29.99770 * 5 4 2 7 7 C 1.50702 * 109.47216 * 269.99946 * 5 4 2 8 8 H 1.08004 * 120.00072 * 125.55448 * 7 5 4 9 9 C 1.37872 * 119.99762 * 305.55734 * 7 5 4 10 10 N 1.31518 * 120.00038 * 198.32518 * 9 7 5 11 11 Si 1.86803 * 120.00296 * 18.32973 * 9 7 5 12 12 H 1.48490 * 109.47266 * 179.97438 * 11 9 7 13 13 H 1.48503 * 109.46653 * 299.99980 * 11 9 7 14 14 H 1.48501 * 109.47094 * 59.99747 * 11 9 7 15 15 C 1.52995 * 109.47480 * 149.99843 * 5 4 2 16 16 N 1.46900 * 109.47351 * 292.58052 * 15 5 4 17 17 C 1.46908 * 109.46734 * 64.07151 * 16 15 5 18 18 C 1.46894 * 109.47429 * 184.06879 * 16 15 5 19 19 C 1.46894 * 109.47134 * 304.07725 * 16 15 5 20 20 C 1.50698 * 109.47163 * 239.99678 * 2 1 3 21 21 N 1.29033 * 124.91291 * 105.00450 * 20 2 1 22 22 C 1.31779 * 117.11797 * 179.97438 * 21 20 2 23 23 C 1.33636 * 114.50642 * 359.97438 * 22 21 20 24 24 S 1.70975 * 124.91677 * 284.69469 * 20 2 1 25 25 H 1.09000 * 109.47136 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46968 * 300.00453 * 1 2 3 27 27 H 1.09000 * 109.46853 * 59.99883 * 1 2 3 28 28 H 0.96999 * 119.99704 * 354.93067 * 10 9 7 29 29 H 1.09004 * 109.47220 * 52.58337 * 15 5 4 30 30 H 1.09001 * 109.47374 * 172.58631 * 15 5 4 31 31 H 1.09007 * 109.46976 * 51.06589 * 17 16 15 32 32 H 1.09002 * 109.46691 * 171.05912 * 17 16 15 33 33 H 1.08993 * 109.47095 * 291.06198 * 17 16 15 34 34 H 1.09007 * 109.47140 * 60.00806 * 18 16 15 35 35 H 1.08996 * 109.47434 * 179.97438 * 18 16 15 36 36 H 1.08996 * 109.47801 * 300.00625 * 18 16 15 37 37 H 1.09000 * 109.47644 * 59.99918 * 19 16 15 38 38 H 1.09006 * 109.47263 * 179.97438 * 19 16 15 39 39 H 1.08999 * 109.47317 * 299.99264 * 19 16 15 40 40 H 1.08008 * 122.74368 * 180.02562 * 22 21 20 41 41 H 1.08002 * 126.03944 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.2000 0.1830 2.2941 6 1 1.4939 1.0119 2.2462 7 6 3.6077 0.7209 2.2803 8 1 3.7790 1.7866 2.3194 9 6 4.6768 -0.1474 2.2178 10 7 5.8780 0.2626 2.5626 11 14 4.4195 -1.9061 1.6433 12 1 5.7164 -2.6290 1.6658 13 1 3.4574 -2.5863 2.5472 14 1 3.8801 -1.9010 0.2597 15 6 1.9695 -0.6095 3.5824 16 7 0.5521 -0.9826 3.6809 17 6 0.2066 -1.8888 2.5774 18 6 0.3115 -1.6582 4.9628 19 6 -0.2791 0.2258 3.6005 20 6 2.0324 -0.7105 -1.2304 21 7 2.5368 -0.1279 -2.2653 22 6 2.9289 -0.9007 -3.2582 23 6 2.7455 -2.2077 -3.0489 24 16 2.0233 -2.4055 -1.4540 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 6.0258 1.1939 2.7901 29 1 2.5825 -1.5108 3.5692 30 1 2.2440 0.0041 4.4405 31 1 0.9253 -2.7076 2.5411 32 1 -0.7941 -2.2905 2.7369 33 1 0.2323 -1.3407 1.6356 34 1 0.5678 -0.9859 5.7816 35 1 -0.7403 -1.9347 5.0361 36 1 0.9282 -2.5549 5.0225 37 1 -0.1006 0.7271 2.6492 38 1 -1.3309 -0.0511 3.6731 39 1 -0.0228 0.8982 4.4192 40 1 3.3637 -0.5096 -4.1663 41 1 2.9988 -3.0027 -3.7347 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224004691.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:54 Heat of formation + Delta-G solvation = 107.026347 kcal Electronic energy + Delta-G solvation = -22592.494233 eV Core-core repulsion = 19525.420593 eV Total energy + Delta-G solvation = -3067.073640 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.138 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.88453 -40.69630 -39.10760 -35.42210 -33.58151 -31.47043 -30.46439 -29.58054 -29.41588 -27.63369 -26.58420 -24.47561 -23.26229 -22.74752 -20.98942 -19.94553 -19.21598 -18.28940 -18.03556 -17.57788 -17.16078 -16.67300 -16.36242 -15.64509 -15.47604 -15.14656 -14.86756 -14.59434 -14.24813 -14.14634 -13.83965 -13.63696 -13.55888 -13.32175 -13.24234 -13.01487 -12.99006 -12.68880 -12.62381 -12.40676 -12.31103 -12.14812 -11.73052 -11.10664 -10.81243 -10.60528 -10.37882 -10.27209 -9.60360 -8.84899 -6.69722 -0.26511 0.45264 0.80330 0.94693 1.25560 1.59420 1.76113 1.85501 2.37588 2.51289 2.80647 2.99374 3.07228 3.17566 3.48184 3.79160 3.91608 4.04319 4.11491 4.22469 4.24949 4.26682 4.32810 4.33831 4.38391 4.47729 4.54619 4.58164 4.60340 4.66095 4.78214 4.83312 4.87578 4.92998 5.02209 5.15859 5.22789 5.53950 5.85092 6.00373 6.46981 6.79467 7.26794 8.49747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.167 3.833 3 H 0.069 0.931 4 O -0.389 6.389 5 C 0.177 3.823 6 H 0.080 0.920 7 C -0.630 4.630 8 H 0.021 0.979 9 C -0.001 4.001 10 N -0.930 5.930 11 Si 1.089 2.911 12 H -0.353 1.353 13 H -0.212 1.212 14 H -0.248 1.248 15 C 0.003 3.997 16 N -0.258 5.258 17 C -0.070 4.070 18 C -0.047 4.047 19 C -0.059 4.059 20 C 0.036 3.964 21 N -0.512 5.512 22 C 0.014 3.986 23 C -0.268 4.268 24 S 0.183 5.817 25 H 0.093 0.907 26 H 0.101 0.899 27 H 0.070 0.930 28 H 0.257 0.743 29 H 0.116 0.884 30 H 0.140 0.860 31 H 0.108 0.892 32 H 0.149 0.851 33 H 0.121 0.879 34 H 0.122 0.878 35 H 0.147 0.853 36 H 0.113 0.887 37 H 0.103 0.897 38 H 0.153 0.847 39 H 0.125 0.875 40 H 0.185 0.815 41 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.967 -7.705 7.428 26.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.105 3.895 3 H 0.087 0.913 4 O -0.309 6.309 5 C 0.121 3.879 6 H 0.098 0.902 7 C -0.667 4.667 8 H 0.039 0.961 9 C -0.203 4.203 10 N -0.564 5.564 11 Si 0.916 3.084 12 H -0.285 1.285 13 H -0.136 1.136 14 H -0.173 1.173 15 C -0.118 4.118 16 N 0.084 4.916 17 C -0.211 4.211 18 C -0.188 4.188 19 C -0.199 4.199 20 C -0.241 4.241 21 N -0.228 5.228 22 C -0.136 4.136 23 C -0.407 4.407 24 S 0.437 5.563 25 H 0.112 0.888 26 H 0.120 0.880 27 H 0.089 0.911 28 H 0.067 0.933 29 H 0.134 0.866 30 H 0.158 0.842 31 H 0.127 0.873 32 H 0.167 0.833 33 H 0.139 0.861 34 H 0.140 0.860 35 H 0.165 0.835 36 H 0.132 0.868 37 H 0.121 0.879 38 H 0.171 0.829 39 H 0.144 0.856 40 H 0.202 0.798 41 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -23.489 -9.563 7.865 26.553 hybrid contribution 1.385 2.852 -1.099 3.356 sum -22.104 -6.710 6.766 24.071 Atomic orbital electron populations 1.22565 0.90599 1.04817 1.04803 1.20224 0.94845 0.94509 0.79890 0.91332 1.87649 1.85953 1.37083 1.20264 1.20320 0.95775 0.89784 0.82032 0.90194 1.22251 0.93305 0.93280 1.57912 0.96086 1.27242 0.92064 1.09961 0.91048 1.71037 1.26826 1.18111 1.40415 0.83680 0.74004 0.69979 0.80732 1.28534 1.13632 1.17268 1.24503 0.79916 1.05331 1.02038 1.45997 1.13671 1.15779 1.16137 1.24810 1.07500 0.96908 0.91882 1.24304 1.09254 1.01992 0.83214 1.24417 0.99398 0.87414 1.08683 1.27228 1.02280 0.95777 0.98784 1.66186 1.13517 1.40965 1.02141 1.22065 1.02543 0.89775 0.99267 1.27550 1.09983 1.01684 1.01510 1.83396 1.55434 1.06939 1.10579 0.88826 0.88028 0.91112 0.93340 0.86593 0.84230 0.87333 0.83265 0.86067 0.85967 0.83490 0.86796 0.87864 0.82853 0.85640 0.79769 0.78070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 1.89 7.98 71.98 0.57 2.46 16 2 C 0.17 0.10 3.02 29.85 0.09 0.19 16 3 H 0.07 0.50 7.79 -2.39 -0.02 0.48 16 4 O -0.39 0.47 3.12 -148.98 -0.46 0.00 16 5 C 0.18 -0.15 1.62 29.85 0.05 -0.10 16 6 H 0.08 -0.51 5.35 -2.39 -0.01 -0.52 16 7 C -0.63 -11.98 9.27 25.60 0.24 -11.74 16 8 H 0.02 0.59 8.06 -2.91 -0.02 0.57 16 9 C 0.00 -0.01 5.34 84.65 0.45 0.44 16 10 N -0.93 -33.73 13.70 21.45 0.29 -33.44 16 11 Si 1.09 17.63 24.91 68.60 1.71 19.34 16 12 H -0.35 -9.18 7.11 99.48 0.71 -8.48 16 13 H -0.21 -0.52 5.48 99.48 0.54 0.02 16 14 H -0.25 -3.44 4.31 99.48 0.43 -3.01 16 15 C 0.00 -0.04 3.53 86.30 0.30 0.26 16 16 N -0.26 6.74 0.05 ******* -0.07 6.67 16 17 C -0.07 1.81 7.15 127.69 0.91 2.72 16 18 C -0.05 1.51 8.00 127.69 1.02 2.53 16 19 C -0.06 1.72 7.55 127.69 0.96 2.69 16 20 C 0.04 0.24 5.66 88.52 0.50 0.74 16 21 N -0.51 -6.42 10.54 -191.44 -2.02 -8.44 16 22 C 0.01 0.12 11.35 83.66 0.95 1.07 16 23 C -0.27 -0.99 11.37 66.78 0.76 -0.24 16 24 S 0.18 0.34 21.38 -56.49 -1.21 -0.87 16 25 H 0.09 -1.46 7.06 -2.39 -0.02 -1.48 16 26 H 0.10 -1.89 5.57 -2.39 -0.01 -1.90 16 27 H 0.07 -0.56 8.14 -2.39 -0.02 -0.58 16 28 H 0.26 9.75 8.73 -92.71 -0.81 8.94 16 29 H 0.12 -0.98 4.71 -2.38 -0.01 -0.99 16 30 H 0.14 -1.78 8.09 -2.39 -0.02 -1.80 16 31 H 0.11 -2.48 7.96 -2.38 -0.02 -2.50 16 32 H 0.15 -5.06 8.01 -2.39 -0.02 -5.08 16 33 H 0.12 -2.55 2.08 -2.39 0.00 -2.56 16 34 H 0.12 -3.93 8.12 -2.38 -0.02 -3.94 16 35 H 0.15 -5.52 8.08 -2.39 -0.02 -5.54 16 36 H 0.11 -3.44 8.14 -2.39 -0.02 -3.46 16 37 H 0.10 -2.63 3.57 -2.39 -0.01 -2.64 16 38 H 0.15 -5.59 8.14 -2.38 -0.02 -5.61 16 39 H 0.13 -3.76 8.14 -2.39 -0.02 -3.78 16 40 H 0.19 0.81 8.06 -2.91 -0.02 0.79 16 41 H 0.20 -0.49 8.06 -2.91 -0.02 -0.51 16 Total: 0.00 -64.88 314.27 5.60 -59.29 By element: Atomic # 1 Polarization: -44.12 SS G_CDS: 0.54 Total: -43.58 kcal Atomic # 6 Polarization: -5.79 SS G_CDS: 6.81 Total: 1.02 kcal Atomic # 7 Polarization: -33.41 SS G_CDS: -1.79 Total: -35.21 kcal Atomic # 8 Polarization: 0.47 SS G_CDS: -0.46 Total: 0.00 kcal Atomic # 14 Polarization: 17.63 SS G_CDS: 1.71 Total: 19.34 kcal Atomic # 16 Polarization: 0.34 SS G_CDS: -1.21 Total: -0.87 kcal Total: -64.88 5.60 -59.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224004691.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.312 kcal (2) G-P(sol) polarization free energy of solvation -64.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds